Wall clock time and date at job start Tue Mar 31 2020 19:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.34258 * 126.52488 * 2 1 4 4 C 1.34049 * 108.22958 * 180.02562 * 3 2 1 5 5 C 1.50697 * 125.38207 * 179.97438 * 4 3 2 6 6 C 1.53000 * 117.49504 * 351.40380 * 5 4 3 7 7 C 1.52997 * 60.00347 * 107.48912 * 6 5 4 8 8 N 1.29933 * 109.24176 * 0.26086 * 4 3 2 9 9 C 1.36071 * 108.47528 * 359.58059 * 8 4 3 10 10 C 1.47425 * 126.44713 * 180.16351 * 9 8 4 11 11 O 1.21614 * 119.99894 * 180.29655 * 10 9 8 12 12 N 1.34774 * 120.00029 * 0.29600 * 10 9 8 13 13 C 1.46499 * 119.99966 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47380 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47454 * 179.97438 * 14 13 12 16 16 C 1.52992 * 109.47274 * 179.97438 * 15 14 13 17 17 C 1.53003 * 109.47304 * 180.02562 * 16 15 14 18 18 C 1.52999 * 109.47051 * 179.97438 * 17 16 15 19 19 N 1.46499 * 109.46948 * 179.97438 * 18 17 16 20 20 C 1.36940 * 120.00191 * 180.02562 * 19 18 17 21 21 H 1.07997 * 119.99938 * 359.97438 * 20 19 18 22 22 C 1.38810 * 120.00145 * 180.02562 * 20 19 18 23 23 N 1.31625 * 120.00040 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99901 * 179.97438 * 22 20 19 25 25 H 1.48492 * 109.47270 * 359.97438 * 24 22 20 26 26 H 1.48507 * 109.47366 * 120.00019 * 24 22 20 27 27 H 1.48508 * 109.46984 * 239.99285 * 24 22 20 28 28 H 1.08997 * 109.47237 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47117 * 119.98005 * 1 2 3 30 30 H 1.09001 * 109.47146 * 239.97568 * 1 2 3 31 31 H 1.08990 * 115.56356 * 205.71551 * 5 4 3 32 32 H 1.09002 * 117.49696 * 214.98125 * 6 5 4 33 33 H 1.09002 * 117.50343 * 0.02562 * 6 5 4 34 34 H 1.08999 * 117.49685 * 252.51237 * 7 6 5 35 35 H 1.08997 * 117.50044 * 107.48590 * 7 6 5 36 36 H 0.96994 * 120.00190 * 0.02562 * 12 10 9 37 37 H 1.09008 * 109.46939 * 300.00543 * 13 12 10 38 38 H 1.08999 * 109.47221 * 59.99687 * 13 12 10 39 39 H 1.08996 * 109.46912 * 300.00231 * 14 13 12 40 40 H 1.09003 * 109.46861 * 59.99831 * 14 13 12 41 41 H 1.08996 * 109.47390 * 300.00110 * 15 14 13 42 42 H 1.09008 * 109.46624 * 60.00081 * 15 14 13 43 43 H 1.09008 * 109.47515 * 300.00236 * 16 15 14 44 44 H 1.08999 * 109.47392 * 59.99837 * 16 15 14 45 45 H 1.08996 * 109.47123 * 300.00196 * 17 16 15 46 46 H 1.08995 * 109.47125 * 59.99953 * 17 16 15 47 47 H 1.09001 * 109.47464 * 299.99635 * 18 17 16 48 48 H 1.09000 * 109.47397 * 60.00436 * 18 17 16 49 49 H 0.97004 * 120.00266 * 359.97438 * 19 18 17 50 50 H 0.96994 * 119.99983 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3060 1.0789 0.0000 4 6 3.5788 0.6581 -0.0006 5 6 4.7929 1.5507 -0.0013 6 6 4.5671 3.0503 -0.2043 7 6 4.9610 2.5158 1.1741 8 7 3.6002 -0.6410 -0.0065 9 6 2.3170 -1.0935 -0.0005 10 6 1.8854 -2.5032 -0.0007 11 8 0.7003 -2.7762 -0.0004 12 7 2.8041 -3.4893 -0.0013 13 6 2.3752 -4.8901 -0.0010 14 6 3.6051 -5.8001 -0.0011 15 6 3.1572 -7.2630 -0.0001 16 6 4.3871 -8.1730 -0.0009 17 6 3.9391 -9.6360 -0.0006 18 6 5.1691 -10.5459 -0.0020 19 7 4.7402 -11.9467 -0.0010 20 6 5.6736 -12.9487 -0.0015 21 1 6.7260 -12.7062 -0.0030 22 6 5.2672 -14.2759 -0.0011 23 7 3.9846 -14.5715 0.0002 24 14 6.5406 -15.6426 -0.0025 25 1 7.9023 -15.0504 -0.0046 26 1 6.3672 -16.4821 1.2101 27 1 6.3644 -16.4821 -1.2149 28 1 -0.3633 1.0276 0.0005 29 1 -0.3633 -0.5135 -0.8901 30 1 -0.3633 -0.5142 0.8898 31 1 5.6964 1.1155 -0.4283 32 1 5.3220 3.6016 -0.7649 33 1 3.5403 3.3913 -0.3369 34 1 4.1934 2.5049 1.9478 35 1 5.9751 2.7153 1.5203 36 1 3.7493 -3.2715 -0.0012 37 1 1.7780 -5.0869 0.8895 38 1 1.7768 -5.0871 -0.8905 39 1 4.2025 -5.6033 -0.8913 40 1 4.2030 -5.6029 0.8887 41 1 2.5599 -7.4596 0.8902 42 1 2.5590 -7.4604 -0.8898 43 1 4.9840 -7.9764 -0.8916 44 1 4.9856 -7.9757 0.8884 45 1 3.3420 -9.8329 0.8898 46 1 3.3408 -9.8330 -0.8901 47 1 5.7658 -10.3490 -0.8927 48 1 5.7678 -10.3491 0.8873 49 1 3.7949 -12.1646 0.0007 50 1 3.7006 -15.4989 0.0008 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179940026.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:44 Heat of formation + Delta-G solvation = -30.992989 kcal Electronic energy + Delta-G solvation = -26682.931848 eV Core-core repulsion = 22710.967252 eV Total energy + Delta-G solvation = -3971.964596 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -44.62233 -40.68824 -38.19658 -37.92806 -36.80127 -36.05637 -35.31052 -33.50541 -33.34638 -31.57894 -29.10888 -28.06394 -26.10481 -25.16213 -24.06523 -23.47325 -23.25443 -22.33156 -22.20792 -21.85593 -20.96817 -19.13782 -18.86522 -18.15512 -17.47403 -17.07731 -17.06729 -16.65367 -16.44639 -16.27057 -15.57919 -15.39175 -15.33760 -15.24591 -15.01252 -14.59630 -14.16773 -14.01853 -13.91506 -13.56502 -13.45019 -13.29798 -13.04834 -12.98243 -12.73648 -12.63085 -12.46751 -12.41291 -12.13214 -12.03330 -11.95479 -11.83623 -11.80449 -11.77201 -11.61268 -11.50509 -11.35199 -11.21655 -10.94938 -10.26830 -9.75372 -9.01881 -7.96922 -5.26524 -0.09148 0.77562 1.29073 1.46448 1.47942 1.58326 1.98252 2.09195 2.55217 2.59580 2.88106 3.36688 3.46772 3.57352 3.69665 3.73262 3.92454 3.99820 4.00081 4.05485 4.10250 4.23519 4.28542 4.31601 4.39177 4.52207 4.58660 4.61574 4.73683 4.74655 4.76605 4.82018 4.87790 4.95547 4.97085 4.97826 5.01709 5.05200 5.06039 5.13708 5.17949 5.27555 5.29243 5.37884 5.47479 5.53161 5.56064 6.19682 6.26046 6.49395 6.99829 7.31356 8.08311 8.31399 9.27185 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024429 B = 0.001270 C = 0.001213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.912995 B =22037.990292 C =23068.562693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.042 3.958 3 O -0.195 6.195 4 C 0.228 3.772 5 C -0.094 4.094 6 C -0.150 4.150 7 C -0.149 4.149 8 N -0.475 5.475 9 C -0.104 4.104 10 C 0.597 3.403 11 O -0.561 6.561 12 N -0.705 5.705 13 C 0.121 3.879 14 C -0.119 4.119 15 C -0.111 4.111 16 C -0.104 4.104 17 C -0.116 4.116 18 C 0.147 3.853 19 N -0.751 5.751 20 C -0.250 4.250 21 H 0.076 0.924 22 C -0.077 4.077 23 N -0.971 5.971 24 Si 0.977 3.023 25 H -0.265 1.265 26 H -0.291 1.291 27 H -0.291 1.291 28 H 0.104 0.896 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.160 0.840 32 H 0.133 0.867 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.132 0.868 36 H 0.415 0.585 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.055 0.945 46 H 0.055 0.945 47 H 0.019 0.981 48 H 0.019 0.981 49 H 0.373 0.627 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.602 43.714 0.371 43.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.014 4.014 3 O -0.083 6.083 4 C 0.019 3.981 5 C -0.112 4.112 6 C -0.187 4.187 7 C -0.187 4.187 8 N -0.204 5.204 9 C -0.223 4.223 10 C 0.384 3.616 11 O -0.440 6.440 12 N -0.356 5.356 13 C -0.002 4.002 14 C -0.157 4.157 15 C -0.149 4.149 16 C -0.142 4.142 17 C -0.154 4.154 18 C 0.021 3.979 19 N -0.394 5.394 20 C -0.382 4.382 21 H 0.094 0.906 22 C -0.270 4.270 23 N -0.622 5.622 24 Si 0.806 3.194 25 H -0.189 1.189 26 H -0.218 1.218 27 H -0.218 1.218 28 H 0.123 0.877 29 H 0.118 0.882 30 H 0.118 0.882 31 H 0.177 0.823 32 H 0.151 0.849 33 H 0.117 0.883 34 H 0.111 0.889 35 H 0.151 0.849 36 H 0.252 0.748 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.074 0.926 46 H 0.074 0.926 47 H 0.037 0.963 48 H 0.037 0.963 49 H 0.204 0.796 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.704 43.059 0.358 43.094 hybrid contribution -0.096 -0.988 -0.018 0.993 sum -1.799 42.071 0.340 42.110 Atomic orbital electron populations 1.20573 0.80602 1.05569 1.05463 1.24210 0.96142 0.82959 0.98137 1.84316 1.18049 1.36057 1.69848 1.25722 0.83785 0.89568 0.99020 1.20576 0.91221 0.90191 1.09256 1.23238 1.04551 0.91311 0.99631 1.23257 1.05124 0.98958 0.91389 1.70639 1.21314 1.09771 1.18713 1.21505 0.89609 0.95551 1.15619 1.16866 0.85346 0.83195 0.76233 1.90792 1.17162 1.83849 1.52226 1.45796 1.10428 1.06043 1.73315 1.21472 0.97878 0.78645 1.02240 1.21699 0.96489 0.93674 1.03805 1.21434 0.97673 0.93114 1.02695 1.21420 0.98008 0.92155 1.02664 1.21631 0.97032 0.95270 1.01476 1.20881 0.96164 0.83385 0.97442 1.42673 1.05814 1.01427 1.89453 1.19735 0.89890 0.87228 1.41334 0.90623 1.25635 0.98090 0.99688 1.03537 1.69836 1.15070 1.17776 1.59529 0.85019 0.78623 0.78998 0.76789 1.18932 1.21823 1.21836 0.87689 0.88239 0.88240 0.82257 0.84889 0.88337 0.88891 0.84944 0.74832 0.91655 0.91647 0.90316 0.90321 0.91623 0.91634 0.91360 0.91354 0.92626 0.92631 0.96311 0.96323 0.79558 0.93925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.80 9.13 71.24 0.65 -0.15 16 2 C 0.04 0.76 7.44 25.18 0.19 0.95 16 3 O -0.20 -3.23 10.40 0.38 0.00 -3.23 16 4 C 0.23 3.69 7.80 88.39 0.69 4.38 16 5 C -0.09 -0.79 6.33 -11.54 -0.07 -0.86 16 6 C -0.15 -0.61 10.16 30.59 0.31 -0.30 16 7 C -0.15 -0.70 10.23 30.60 0.31 -0.38 16 8 N -0.48 -9.64 11.06 -293.04 -3.24 -12.88 16 9 C -0.10 -2.25 6.99 40.41 0.28 -1.96 16 10 C 0.60 14.07 7.81 86.66 0.68 14.75 16 11 O -0.56 -15.50 15.61 -4.08 -0.06 -15.56 16 12 N -0.71 -13.78 5.55 -466.36 -2.59 -16.37 16 13 C 0.12 2.23 5.67 86.38 0.49 2.72 16 14 C -0.12 -1.89 5.33 30.59 0.16 -1.72 16 15 C -0.11 -2.16 5.21 30.59 0.16 -2.00 16 16 C -0.10 -2.46 5.21 30.59 0.16 -2.30 16 17 C -0.12 -3.78 5.33 30.60 0.16 -3.62 16 18 C 0.15 6.14 6.26 86.38 0.54 6.68 16 19 N -0.75 -40.32 5.60 -343.46 -1.92 -42.24 16 20 C -0.25 -14.57 9.99 84.03 0.84 -13.73 16 21 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 22 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 23 N -0.97 -61.16 13.06 21.65 0.28 -60.88 16 24 Si 0.98 47.10 29.55 68.60 2.03 49.12 16 25 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 26 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 27 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 28 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.10 1.26 8.08 -2.39 -0.02 1.24 16 30 H 0.10 1.26 8.07 -2.39 -0.02 1.24 16 31 H 0.16 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.13 -0.02 8.14 -2.39 -0.02 -0.03 16 33 H 0.10 0.53 7.94 -2.39 -0.02 0.51 16 34 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.13 0.10 8.14 -2.39 -0.02 0.08 16 36 H 0.42 7.02 8.20 -92.71 -0.76 6.26 16 37 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 38 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 43 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 44 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 46 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 47 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 48 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 49 H 0.37 21.16 7.67 -92.71 -0.71 20.45 16 50 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -75.18 421.07 -0.02 -75.20 By element: Atomic # 1 Polarization: 29.04 SS G_CDS: -0.53 Total: 28.51 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: 6.02 Total: -1.67 kcal Atomic # 7 Polarization: -124.90 SS G_CDS: -7.47 Total: -132.37 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.06 Total: -18.79 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.12 kcal Total: -75.18 -0.02 -75.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179940026.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.202 kcal (2) G-P(sol) polarization free energy of solvation -75.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds