Wall clock time and date at job start Tue Mar 31 2020 19:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.34255 * 126.52175 * 2 1 4 4 C 1.34050 * 108.22608 * 180.26192 * 3 2 1 5 5 C 1.50698 * 125.38292 * 179.69904 * 4 3 2 6 6 C 1.52999 * 109.47101 * 300.04327 * 5 4 3 7 7 C 1.53000 * 109.47018 * 60.04191 * 5 4 3 8 8 N 1.29940 * 109.24181 * 359.73980 * 4 3 2 9 9 C 1.36067 * 108.47309 * 359.97438 * 8 4 3 10 10 C 1.47423 * 126.44485 * 180.02562 * 9 8 4 11 11 O 1.21615 * 119.99947 * 173.86236 * 10 9 8 12 12 N 1.34773 * 120.00023 * 353.86971 * 10 9 8 13 13 C 1.46929 * 120.63219 * 172.87838 * 12 10 9 14 14 C 1.53189 * 108.89782 * 126.29486 * 13 12 10 15 15 C 1.53355 * 109.14749 * 54.57786 * 14 13 12 16 16 C 1.52995 * 109.40713 * 178.68417 * 15 14 13 17 17 N 1.46502 * 109.47220 * 295.12182 * 16 15 14 18 18 C 1.36939 * 120.00242 * 180.02562 * 17 16 15 19 19 H 1.08008 * 119.99926 * 359.97438 * 18 17 16 20 20 C 1.38810 * 120.00162 * 179.97438 * 18 17 16 21 21 N 1.31616 * 119.99968 * 179.97438 * 20 18 17 22 22 Si 1.86804 * 119.99696 * 0.02562 * 20 18 17 23 23 H 1.48507 * 109.46762 * 90.00048 * 22 20 18 24 24 H 1.48502 * 109.46722 * 209.99598 * 22 20 18 25 25 H 1.48488 * 109.47399 * 329.99991 * 22 20 18 26 26 C 1.53043 * 109.60629 * 298.71462 * 15 14 13 27 27 C 1.46924 * 120.63240 * 352.85425 * 12 10 9 28 28 H 1.08993 * 109.47235 * 270.18533 * 1 2 3 29 29 H 1.09003 * 109.47136 * 30.19090 * 1 2 3 30 30 H 1.09005 * 109.47129 * 150.18714 * 1 2 3 31 31 H 1.09003 * 109.47349 * 180.02562 * 5 4 3 32 32 H 1.09007 * 109.47047 * 59.99876 * 6 5 4 33 33 H 1.09004 * 109.47255 * 179.97438 * 6 5 4 34 34 H 1.09002 * 109.47553 * 300.00324 * 6 5 4 35 35 H 1.09002 * 109.46956 * 60.00689 * 7 5 4 36 36 H 1.09000 * 109.46845 * 180.02562 * 7 5 4 37 37 H 1.08990 * 109.47323 * 300.00324 * 7 5 4 38 38 H 1.09006 * 109.58700 * 246.15478 * 13 12 10 39 39 H 1.09001 * 109.58515 * 6.43422 * 13 12 10 40 40 H 1.08996 * 109.49773 * 174.65951 * 14 13 12 41 41 H 1.09002 * 109.49751 * 294.75810 * 14 13 12 42 42 H 1.08998 * 109.43073 * 58.76004 * 15 14 13 43 43 H 1.08998 * 109.47312 * 55.11939 * 16 15 14 44 44 H 1.08997 * 109.47317 * 175.12109 * 16 15 14 45 45 H 0.96996 * 119.99741 * 0.02562 * 17 16 15 46 46 H 0.97001 * 119.99714 * 179.97438 * 21 20 18 47 47 H 1.09000 * 109.49620 * 301.41990 * 26 15 14 48 48 H 1.09001 * 109.52176 * 181.34184 * 26 15 14 49 49 H 1.09000 * 109.58400 * 353.41677 * 27 12 10 50 50 H 1.08996 * 109.58947 * 113.70332 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3060 1.0789 0.0000 4 6 3.5787 0.6581 -0.0058 5 6 4.7929 1.5507 -0.0143 6 6 4.7694 2.4318 -1.2649 7 6 4.7838 2.4360 1.2335 8 7 3.6002 -0.6411 -0.0039 9 6 2.3170 -1.0935 0.0040 10 6 1.8854 -2.5031 0.0092 11 8 0.7067 -2.7777 0.1287 12 7 2.7970 -3.4875 -0.1184 13 6 2.4062 -4.8950 0.0401 14 6 2.8537 -5.6767 -1.1989 15 6 4.3562 -5.4591 -1.4155 16 6 4.8162 -6.2637 -2.6328 17 7 4.6642 -7.6947 -2.3581 18 6 5.0153 -8.6155 -3.3089 19 1 5.4039 -8.2868 -4.2615 20 6 4.8718 -9.9714 -3.0484 21 7 5.2088 -10.8564 -3.9625 22 14 4.1990 -10.5399 -1.4011 23 1 2.7204 -10.6524 -1.4826 24 1 4.7781 -11.8642 -1.0603 25 1 4.5634 -9.5552 -0.3511 26 6 4.6307 -3.9724 -1.6536 27 6 4.2005 -3.1737 -0.4192 28 1 -0.3633 0.0033 1.0276 29 1 -0.3633 0.8883 -0.5168 30 1 -0.3634 -0.8917 -0.5109 31 1 5.6944 0.9380 -0.0182 32 1 3.8679 3.0446 -1.2607 33 1 5.6474 3.0778 -1.2708 34 1 4.7758 1.8012 -2.1539 35 1 4.8006 1.8082 2.1245 36 1 5.6617 3.0819 1.2271 37 1 3.8824 3.0487 1.2377 38 1 2.8858 -5.3097 0.9268 39 1 1.3234 -4.9640 0.1444 40 1 2.6540 -6.7380 -1.0512 41 1 2.3055 -5.3208 -2.0713 42 1 4.9018 -5.7923 -0.5327 43 1 4.2099 -5.9934 -3.4973 44 1 5.8632 -6.0428 -2.8399 45 1 4.3148 -7.9899 -1.5027 46 1 5.1088 -11.8039 -3.7803 47 1 4.0659 -3.6327 -2.5218 48 1 5.6957 -3.8225 -1.8310 49 1 4.3013 -2.1072 -0.6207 50 1 4.8261 -3.4457 0.4309 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205258948.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:04 Heat of formation + Delta-G solvation = -6.679152 kcal Electronic energy + Delta-G solvation = -29528.833083 eV Core-core repulsion = 25557.922814 eV Total energy + Delta-G solvation = -3970.910269 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.84538 -40.08284 -37.77339 -36.27249 -35.36236 -34.89259 -32.77038 -32.29882 -31.02858 -30.76824 -27.90841 -27.76987 -26.75427 -24.52940 -23.60958 -23.27528 -22.53952 -21.60821 -21.22524 -20.03041 -19.04698 -17.77391 -17.31616 -17.30089 -16.57088 -15.97632 -15.51872 -15.21308 -14.82276 -14.62871 -14.41532 -14.16994 -13.91446 -13.86264 -13.79211 -13.48668 -13.35469 -13.16067 -12.97052 -12.78067 -12.75586 -12.50896 -12.26625 -12.11767 -11.89721 -11.88576 -11.60540 -11.58368 -11.41437 -11.12237 -10.89037 -10.86220 -10.48300 -10.31727 -10.24496 -10.00653 -9.71163 -9.51877 -9.15094 -8.85759 -8.58169 -7.18478 -5.73583 -3.08376 0.79662 1.66612 2.09462 2.85060 3.09656 3.39588 3.40421 3.42184 3.47364 4.18126 4.26970 4.42275 4.44141 4.62055 4.66071 4.85759 4.93505 4.99599 5.04752 5.05129 5.06928 5.12648 5.20482 5.22589 5.26788 5.34223 5.40693 5.47064 5.52399 5.55084 5.60472 5.61330 5.63863 5.71074 5.75357 5.82143 5.93775 6.06364 6.11192 6.14714 6.27220 6.37039 6.44997 6.65331 6.75192 6.86930 7.11790 7.37928 8.01692 8.03446 8.45799 9.25284 9.97778 10.18209 11.45090 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019387 B = 0.002470 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.950257 B =11332.861674 C =12212.797090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.039 3.961 3 O -0.193 6.193 4 C 0.200 3.800 5 C 0.002 3.998 6 C -0.151 4.151 7 C -0.150 4.150 8 N -0.453 5.453 9 C -0.070 4.070 10 C 0.600 3.400 11 O -0.541 6.541 12 N -0.589 5.589 13 C 0.109 3.891 14 C -0.124 4.124 15 C -0.099 4.099 16 C 0.163 3.837 17 N -0.756 5.756 18 C -0.242 4.242 19 H 0.089 0.911 20 C 0.002 3.998 21 N -0.936 5.936 22 Si 0.884 3.116 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.277 1.277 26 C -0.124 4.124 27 C 0.080 3.920 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.111 0.889 31 H 0.117 0.883 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.026 0.974 44 H 0.026 0.974 45 H 0.360 0.640 46 H 0.259 0.741 47 H 0.064 0.936 48 H 0.076 0.924 49 H 0.135 0.865 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.066 31.773 11.286 33.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.017 4.017 3 O -0.080 6.080 4 C -0.008 4.008 5 C -0.018 4.018 6 C -0.209 4.209 7 C -0.208 4.208 8 N -0.182 5.182 9 C -0.189 4.189 10 C 0.388 3.612 11 O -0.420 6.420 12 N -0.320 5.320 13 C -0.012 4.012 14 C -0.162 4.162 15 C -0.118 4.118 16 C 0.036 3.964 17 N -0.401 5.401 18 C -0.372 4.372 19 H 0.107 0.893 20 C -0.193 4.193 21 N -0.584 5.584 22 Si 0.714 3.286 23 H -0.210 1.210 24 H -0.218 1.218 25 H -0.203 1.203 26 C -0.162 4.162 27 C -0.042 4.042 28 H 0.110 0.890 29 H 0.098 0.902 30 H 0.129 0.871 31 H 0.135 0.865 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.109 0.891 40 H 0.099 0.901 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.044 0.956 44 H 0.044 0.956 45 H 0.193 0.807 46 H 0.069 0.931 47 H 0.082 0.918 48 H 0.095 0.905 49 H 0.151 0.849 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.060 31.151 11.133 33.329 hybrid contribution -0.826 -0.387 1.105 1.433 sum -4.886 30.764 12.237 33.468 Atomic orbital electron populations 1.20571 0.82491 1.05291 1.04688 1.23718 0.95105 0.83208 0.99687 1.84295 1.17887 1.36162 1.69642 1.26381 0.84080 0.90363 0.99971 1.19823 0.89810 0.94367 0.97769 1.21912 1.03256 0.99587 0.96155 1.21901 1.03254 0.99520 0.96159 1.70603 1.21159 1.08263 1.18195 1.21480 0.88715 0.95551 1.13183 1.16757 0.85101 0.82530 0.76844 1.90768 1.16344 1.82992 1.51889 1.47893 1.09721 1.06116 1.68254 1.21760 1.01789 0.79230 0.98467 1.21977 0.96297 1.00586 0.97382 1.21445 0.95687 0.94721 0.99986 1.20645 0.97696 0.83939 0.94128 1.42738 1.79378 1.01215 1.16807 1.19074 1.35499 0.86511 0.96068 0.89299 1.24674 1.01490 0.95670 0.97486 1.69703 1.54252 1.00783 1.33655 0.86553 0.79060 0.77980 0.85010 1.21033 1.21754 1.20326 1.21895 1.01665 0.94900 0.97788 1.22660 0.79919 1.04312 0.97321 0.88966 0.90161 0.87062 0.86533 0.91827 0.90637 0.91707 0.91848 0.90645 0.91828 0.91389 0.89056 0.90111 0.91415 0.91115 0.95634 0.95581 0.80694 0.93113 0.91767 0.90548 0.84864 0.91868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.59 9.82 36.01 0.35 -0.24 16 2 C 0.04 0.42 7.44 -35.08 -0.26 0.16 16 3 O -0.19 -1.88 10.73 6.52 0.07 -1.81 16 4 C 0.20 1.85 6.81 -13.08 -0.09 1.76 16 5 C 0.00 0.01 3.39 -91.77 -0.31 -0.30 16 6 C -0.15 -0.68 9.17 37.16 0.34 -0.34 16 7 C -0.15 -0.66 9.18 37.16 0.34 -0.32 16 8 N -0.45 -5.16 7.81 -7.66 -0.06 -5.22 16 9 C -0.07 -0.88 6.68 -83.02 -0.55 -1.44 16 10 C 0.60 8.67 7.67 -12.52 -0.10 8.57 16 11 O -0.54 -8.66 14.32 5.26 0.08 -8.58 16 12 N -0.59 -8.15 2.97 -174.03 -0.52 -8.67 16 13 C 0.11 1.53 6.43 -3.71 -0.02 1.50 16 14 C -0.12 -1.92 5.27 -26.45 -0.14 -2.06 16 15 C -0.10 -1.56 2.19 -90.42 -0.20 -1.75 16 16 C 0.16 3.22 5.65 -4.04 -0.02 3.19 16 17 N -0.76 -18.30 5.12 -59.91 -0.31 -18.61 16 18 C -0.24 -6.99 10.47 -15.06 -0.16 -7.15 16 19 H 0.09 2.75 8.06 -52.48 -0.42 2.33 16 20 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 21 N -0.94 -29.91 13.97 55.49 0.78 -29.13 16 22 Si 0.88 22.47 27.74 -169.99 -4.71 17.76 16 23 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 25 H -0.28 -6.61 6.52 56.52 0.37 -6.24 16 26 C -0.12 -1.62 5.36 -26.61 -0.14 -1.76 16 27 C 0.08 1.00 6.11 -3.71 -0.02 0.98 16 28 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.11 1.05 6.64 -51.93 -0.34 0.71 16 31 H 0.12 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 37 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.09 1.31 7.00 -51.93 -0.36 0.95 16 40 H 0.08 1.35 7.16 -51.93 -0.37 0.97 16 41 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.36 8.47 4.71 -40.82 -0.19 8.28 16 46 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 47 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 48 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 49 H 0.13 1.62 4.09 -61.27 -0.25 1.37 16 50 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 394.91 15.07 5.95 5.95 Total: -1.00 -34.53 394.91 -8.11 -42.64 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -8.30 Total: 4.90 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -1.08 Total: 0.77 kcal Atomic # 7 Polarization: -61.52 SS G_CDS: -0.11 Total: -61.63 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.15 Total: -10.39 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.71 Total: 17.76 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.53 -8.11 -42.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205258948.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.960 kcal (2) G-P(sol) polarization free energy of solvation -34.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds