Wall clock time and date at job start Tue Mar 31 2020 19:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.34255 * 126.52175 * 2 1 4 4 C 1.34050 * 108.22608 * 180.26192 * 3 2 1 5 5 C 1.50698 * 125.38292 * 179.69904 * 4 3 2 6 6 C 1.52999 * 109.47101 * 300.04327 * 5 4 3 7 7 C 1.53000 * 109.47018 * 60.04191 * 5 4 3 8 8 N 1.29940 * 109.24181 * 359.73980 * 4 3 2 9 9 C 1.36067 * 108.47309 * 359.97438 * 8 4 3 10 10 C 1.47423 * 126.44485 * 180.02562 * 9 8 4 11 11 O 1.21615 * 119.99947 * 173.86236 * 10 9 8 12 12 N 1.34773 * 120.00023 * 353.86971 * 10 9 8 13 13 C 1.46929 * 120.63219 * 172.87838 * 12 10 9 14 14 C 1.53189 * 108.89782 * 126.29486 * 13 12 10 15 15 C 1.53355 * 109.14749 * 54.57786 * 14 13 12 16 16 C 1.52995 * 109.40713 * 178.68417 * 15 14 13 17 17 N 1.46502 * 109.47220 * 295.12182 * 16 15 14 18 18 C 1.36939 * 120.00242 * 180.02562 * 17 16 15 19 19 H 1.08008 * 119.99926 * 359.97438 * 18 17 16 20 20 C 1.38810 * 120.00162 * 179.97438 * 18 17 16 21 21 N 1.31616 * 119.99968 * 179.97438 * 20 18 17 22 22 Si 1.86804 * 119.99696 * 0.02562 * 20 18 17 23 23 H 1.48507 * 109.46762 * 90.00048 * 22 20 18 24 24 H 1.48502 * 109.46722 * 209.99598 * 22 20 18 25 25 H 1.48488 * 109.47399 * 329.99991 * 22 20 18 26 26 C 1.53043 * 109.60629 * 298.71462 * 15 14 13 27 27 C 1.46924 * 120.63240 * 352.85425 * 12 10 9 28 28 H 1.08993 * 109.47235 * 270.18533 * 1 2 3 29 29 H 1.09003 * 109.47136 * 30.19090 * 1 2 3 30 30 H 1.09005 * 109.47129 * 150.18714 * 1 2 3 31 31 H 1.09003 * 109.47349 * 180.02562 * 5 4 3 32 32 H 1.09007 * 109.47047 * 59.99876 * 6 5 4 33 33 H 1.09004 * 109.47255 * 179.97438 * 6 5 4 34 34 H 1.09002 * 109.47553 * 300.00324 * 6 5 4 35 35 H 1.09002 * 109.46956 * 60.00689 * 7 5 4 36 36 H 1.09000 * 109.46845 * 180.02562 * 7 5 4 37 37 H 1.08990 * 109.47323 * 300.00324 * 7 5 4 38 38 H 1.09006 * 109.58700 * 246.15478 * 13 12 10 39 39 H 1.09001 * 109.58515 * 6.43422 * 13 12 10 40 40 H 1.08996 * 109.49773 * 174.65951 * 14 13 12 41 41 H 1.09002 * 109.49751 * 294.75810 * 14 13 12 42 42 H 1.08998 * 109.43073 * 58.76004 * 15 14 13 43 43 H 1.08998 * 109.47312 * 55.11939 * 16 15 14 44 44 H 1.08997 * 109.47317 * 175.12109 * 16 15 14 45 45 H 0.96996 * 119.99741 * 0.02562 * 17 16 15 46 46 H 0.97001 * 119.99714 * 179.97438 * 21 20 18 47 47 H 1.09000 * 109.49620 * 301.41990 * 26 15 14 48 48 H 1.09001 * 109.52176 * 181.34184 * 26 15 14 49 49 H 1.09000 * 109.58400 * 353.41677 * 27 12 10 50 50 H 1.08996 * 109.58947 * 113.70332 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3060 1.0789 0.0000 4 6 3.5787 0.6581 -0.0058 5 6 4.7929 1.5507 -0.0143 6 6 4.7694 2.4318 -1.2649 7 6 4.7838 2.4360 1.2335 8 7 3.6002 -0.6411 -0.0039 9 6 2.3170 -1.0935 0.0040 10 6 1.8854 -2.5031 0.0092 11 8 0.7067 -2.7777 0.1287 12 7 2.7970 -3.4875 -0.1184 13 6 2.4062 -4.8950 0.0401 14 6 2.8537 -5.6767 -1.1989 15 6 4.3562 -5.4591 -1.4155 16 6 4.8162 -6.2637 -2.6328 17 7 4.6642 -7.6947 -2.3581 18 6 5.0153 -8.6155 -3.3089 19 1 5.4039 -8.2868 -4.2615 20 6 4.8718 -9.9714 -3.0484 21 7 5.2088 -10.8564 -3.9625 22 14 4.1990 -10.5399 -1.4011 23 1 2.7204 -10.6524 -1.4826 24 1 4.7781 -11.8642 -1.0603 25 1 4.5634 -9.5552 -0.3511 26 6 4.6307 -3.9724 -1.6536 27 6 4.2005 -3.1737 -0.4192 28 1 -0.3633 0.0033 1.0276 29 1 -0.3633 0.8883 -0.5168 30 1 -0.3634 -0.8917 -0.5109 31 1 5.6944 0.9380 -0.0182 32 1 3.8679 3.0446 -1.2607 33 1 5.6474 3.0778 -1.2708 34 1 4.7758 1.8012 -2.1539 35 1 4.8006 1.8082 2.1245 36 1 5.6617 3.0819 1.2271 37 1 3.8824 3.0487 1.2377 38 1 2.8858 -5.3097 0.9268 39 1 1.3234 -4.9640 0.1444 40 1 2.6540 -6.7380 -1.0512 41 1 2.3055 -5.3208 -2.0713 42 1 4.9018 -5.7923 -0.5327 43 1 4.2099 -5.9934 -3.4973 44 1 5.8632 -6.0428 -2.8399 45 1 4.3148 -7.9899 -1.5027 46 1 5.1088 -11.8039 -3.7803 47 1 4.0659 -3.6327 -2.5218 48 1 5.6957 -3.8225 -1.8310 49 1 4.3013 -2.1072 -0.6207 50 1 4.8261 -3.4457 0.4309 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205258948.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:03 Heat of formation + Delta-G solvation = -29.353577 kcal Electronic energy + Delta-G solvation = -29529.816320 eV Core-core repulsion = 25557.922814 eV Total energy + Delta-G solvation = -3971.893506 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -44.62050 -41.17723 -39.01553 -36.88470 -36.63794 -35.97288 -34.45472 -33.00835 -32.71161 -32.12593 -29.00153 -28.09156 -27.97028 -25.69244 -24.96007 -24.27701 -23.37450 -23.08724 -22.24115 -21.20068 -20.03150 -19.64944 -18.48571 -18.08650 -17.34972 -16.94054 -16.64713 -16.30584 -16.16826 -15.92839 -15.53819 -15.37420 -15.09225 -14.93902 -14.70331 -14.45051 -14.42352 -14.25775 -14.03984 -13.82280 -13.78119 -13.48970 -13.30432 -13.05094 -13.04088 -12.81569 -12.58726 -12.53969 -12.26930 -12.19373 -12.12379 -12.09124 -11.97082 -11.81186 -11.71301 -11.43235 -11.42014 -10.98218 -10.70258 -10.00538 -9.62304 -9.30450 -8.03988 -5.37329 -0.03529 0.85343 1.36381 1.37335 1.40362 1.47531 1.85408 2.10203 2.47333 2.68129 3.27259 3.38746 3.53239 3.58520 3.78847 3.82983 3.91507 4.02397 4.06391 4.12804 4.16470 4.23352 4.30464 4.33982 4.47005 4.53335 4.55724 4.69071 4.73273 4.77222 4.80403 4.85076 4.87434 4.89253 4.91702 4.91823 5.03934 5.06157 5.08778 5.09672 5.20165 5.28821 5.32075 5.34556 5.46965 5.63315 5.74305 6.20050 6.20972 6.44110 6.95678 7.06822 7.82950 8.03099 9.17727 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019387 B = 0.002470 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.950257 B =11332.861674 C =12212.797090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.045 3.955 3 O -0.191 6.191 4 C 0.208 3.792 5 C 0.001 3.999 6 C -0.148 4.148 7 C -0.147 4.147 8 N -0.471 5.471 9 C -0.100 4.100 10 C 0.595 3.405 11 O -0.565 6.565 12 N -0.592 5.592 13 C 0.115 3.885 14 C -0.120 4.120 15 C -0.088 4.088 16 C 0.161 3.839 17 N -0.756 5.756 18 C -0.235 4.235 19 H 0.054 0.946 20 C -0.066 4.066 21 N -0.985 5.985 22 Si 0.955 3.045 23 H -0.278 1.278 24 H -0.294 1.294 25 H -0.249 1.249 26 C -0.116 4.116 27 C 0.085 3.915 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.095 0.905 31 H 0.126 0.874 32 H 0.061 0.939 33 H 0.097 0.903 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.097 0.903 37 H 0.061 0.939 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.069 0.931 41 H 0.055 0.945 42 H 0.078 0.922 43 H 0.016 0.984 44 H 0.027 0.973 45 H 0.366 0.634 46 H 0.258 0.742 47 H 0.056 0.944 48 H 0.093 0.907 49 H 0.141 0.859 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.860 34.295 13.447 37.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.012 4.012 3 O -0.078 6.078 4 C -0.001 4.001 5 C -0.018 4.018 6 C -0.206 4.206 7 C -0.204 4.204 8 N -0.200 5.200 9 C -0.218 4.218 10 C 0.384 3.616 11 O -0.446 6.446 12 N -0.323 5.323 13 C -0.007 4.007 14 C -0.158 4.158 15 C -0.107 4.107 16 C 0.035 3.965 17 N -0.402 5.402 18 C -0.366 4.366 19 H 0.072 0.928 20 C -0.257 4.257 21 N -0.635 5.635 22 Si 0.782 3.218 23 H -0.204 1.204 24 H -0.221 1.221 25 H -0.173 1.173 26 C -0.154 4.154 27 C -0.036 4.036 28 H 0.122 0.878 29 H 0.124 0.876 30 H 0.114 0.886 31 H 0.143 0.857 32 H 0.080 0.920 33 H 0.115 0.885 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.116 0.884 37 H 0.080 0.920 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.088 0.912 41 H 0.074 0.926 42 H 0.096 0.904 43 H 0.035 0.965 44 H 0.045 0.955 45 H 0.200 0.800 46 H 0.067 0.933 47 H 0.075 0.925 48 H 0.111 0.889 49 H 0.158 0.842 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.843 33.723 13.308 36.457 hybrid contribution -0.851 -1.050 0.325 1.390 sum -4.695 32.674 13.633 35.714 Atomic orbital electron populations 1.20648 0.80942 1.05729 1.05562 1.24119 0.96064 0.82948 0.98102 1.84330 1.18122 1.35745 1.69612 1.27193 0.84688 0.90280 0.97920 1.20101 0.88397 0.94357 0.98974 1.21910 1.04246 0.99412 0.95005 1.21896 1.04244 0.99333 0.94976 1.70497 1.20655 1.09335 1.19533 1.21352 0.89828 0.95046 1.15591 1.17038 0.84859 0.83385 0.76327 1.90743 1.17234 1.83561 1.53028 1.47983 1.10237 1.05924 1.68173 1.21666 1.01576 0.79386 0.98070 1.21894 0.96056 1.00088 0.97752 1.21343 0.95647 0.95668 0.98048 1.20797 0.97652 0.82126 0.95927 1.42724 1.79101 1.02338 1.16071 1.19046 1.34267 0.87608 0.95724 0.92795 1.25539 1.02549 0.95750 1.01855 1.69890 1.56259 1.01077 1.36291 0.85407 0.78282 0.77628 0.80515 1.20391 1.22106 1.17323 1.21840 1.02656 0.92927 0.97995 1.22706 0.79228 1.04570 0.97129 0.87764 0.87607 0.88625 0.85661 0.92011 0.88451 0.92664 0.92638 0.88447 0.92016 0.89916 0.89685 0.91237 0.92634 0.90395 0.96546 0.95484 0.79987 0.93310 0.92475 0.88898 0.84230 0.90857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.08 9.82 71.24 0.70 -0.38 16 2 C 0.04 0.90 7.44 25.18 0.19 1.09 16 3 O -0.19 -3.41 10.73 0.40 0.00 -3.40 16 4 C 0.21 3.49 6.81 88.39 0.60 4.09 16 5 C 0.00 0.01 3.39 -11.54 -0.04 -0.03 16 6 C -0.15 -0.98 9.17 71.98 0.66 -0.32 16 7 C -0.15 -0.91 9.18 71.98 0.66 -0.25 16 8 N -0.47 -10.11 7.81 -293.04 -2.29 -12.40 16 9 C -0.10 -2.44 6.68 40.41 0.27 -2.17 16 10 C 0.60 16.92 7.67 86.66 0.66 17.58 16 11 O -0.57 -18.09 14.32 -4.08 -0.06 -18.15 16 12 N -0.59 -15.77 2.97 -822.77 -2.45 -18.22 16 13 C 0.12 3.08 6.43 86.36 0.56 3.63 16 14 C -0.12 -3.59 5.27 30.78 0.16 -3.42 16 15 C -0.09 -2.62 2.19 -10.66 -0.02 -2.65 16 16 C 0.16 6.27 5.65 86.38 0.49 6.75 16 17 N -0.76 -36.17 5.12 -343.45 -1.76 -37.93 16 18 C -0.24 -13.83 10.47 84.03 0.88 -12.95 16 19 H 0.05 3.48 8.06 -2.91 -0.02 3.45 16 20 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 21 N -0.98 -64.39 13.97 21.65 0.30 -64.08 16 22 Si 0.95 46.19 27.74 68.60 1.90 48.09 16 23 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 24 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 25 H -0.25 -10.76 6.52 99.48 0.65 -10.11 16 26 C -0.12 -2.83 5.36 30.67 0.16 -2.67 16 27 C 0.09 1.97 6.11 86.36 0.53 2.50 16 28 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.10 1.78 6.64 -2.38 -0.02 1.76 16 31 H 0.13 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.06 0.44 8.14 -2.38 -0.02 0.42 16 33 H 0.10 0.24 8.14 -2.38 -0.02 0.22 16 34 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.10 0.20 8.14 -2.39 -0.02 0.18 16 37 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 39 H 0.08 2.40 7.00 -2.39 -0.02 2.38 16 40 H 0.07 2.24 7.16 -2.39 -0.02 2.22 16 41 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 43 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.37 16.57 4.71 -92.71 -0.44 16.13 16 46 H 0.26 16.03 8.31 -92.71 -0.77 15.26 16 47 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 48 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 49 H 0.14 3.17 4.09 -20.83 -0.09 3.08 16 50 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -75.67 394.91 2.95 -72.72 By element: Atomic # 1 Polarization: 25.67 SS G_CDS: 0.37 Total: 26.04 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: 6.93 Total: 7.32 kcal Atomic # 7 Polarization: -126.44 SS G_CDS: -6.19 Total: -132.63 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -0.05 Total: -21.55 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 1.90 Total: 48.09 kcal Total: -75.67 2.95 -72.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205258948.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.371 kcal (2) G-P(sol) polarization free energy of solvation -75.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds