Wall clock time and date at job start Tue Mar 31 2020 19:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34325 * 126.44333 * 2 1 4 4 N 1.34475 * 107.67050 * 180.02562 * 3 2 1 5 5 C 1.30259 * 108.70128 * 0.02562 * 4 3 2 6 6 C 1.50694 * 125.61918 * 179.97438 * 5 4 3 7 7 C 1.53001 * 109.47589 * 90.02549 * 6 5 4 8 8 C 1.52993 * 109.47107 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.46859 * 179.97438 * 8 7 6 10 10 O 1.21284 * 120.00188 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99960 * 180.02562 * 9 8 7 12 12 C 1.46507 * 119.99971 * 180.02562 * 11 9 8 13 13 H 1.08996 * 109.46955 * 34.99585 * 12 11 9 14 14 C 1.53002 * 109.46688 * 274.99603 * 12 11 9 15 15 C 1.52997 * 109.46817 * 179.97438 * 14 12 11 16 16 C 1.53006 * 109.47127 * 60.00361 * 15 14 12 17 17 C 1.52999 * 109.46626 * 299.99539 * 16 15 14 18 18 C 1.52996 * 109.47258 * 154.99970 * 12 11 9 19 19 H 1.09000 * 109.47380 * 59.99156 * 18 12 11 20 20 N 1.46510 * 109.46858 * 299.99700 * 18 12 11 21 21 C 1.36936 * 119.99911 * 154.99804 * 20 18 12 22 22 H 1.08004 * 119.99844 * 0.02562 * 21 20 18 23 23 C 1.38806 * 120.00080 * 179.97438 * 21 20 18 24 24 N 1.31619 * 119.99818 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00022 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47003 * 60.00806 * 25 23 21 27 27 H 1.48508 * 109.46880 * 180.02562 * 25 23 21 28 28 H 1.48496 * 109.47042 * 300.00380 * 25 23 21 29 29 O 1.33966 * 108.75762 * 0.22723 * 5 4 3 30 30 H 1.09003 * 109.46927 * 89.97657 * 1 2 3 31 31 H 1.09007 * 109.47162 * 209.97378 * 1 2 3 32 32 H 1.08996 * 109.47071 * 329.97605 * 1 2 3 33 33 H 1.07999 * 126.16754 * 359.97438 * 3 2 1 34 34 H 1.08995 * 109.47186 * 330.01878 * 6 5 4 35 35 H 1.09002 * 109.46810 * 210.02117 * 6 5 4 36 36 H 1.09002 * 109.47023 * 59.99589 * 7 6 5 37 37 H 1.09002 * 109.46692 * 299.99640 * 7 6 5 38 38 H 1.09002 * 109.47333 * 60.00001 * 8 7 6 39 39 H 1.08994 * 109.47578 * 299.99593 * 8 7 6 40 40 H 0.96998 * 120.00021 * 359.97438 * 11 9 8 41 41 H 1.09002 * 109.47070 * 60.00104 * 14 12 11 42 42 H 1.08996 * 109.47407 * 299.99704 * 14 12 11 43 43 H 1.09001 * 109.47502 * 300.00518 * 15 14 12 44 44 H 1.09001 * 109.47289 * 180.02562 * 15 14 12 45 45 H 1.08993 * 109.46955 * 60.00011 * 16 15 14 46 46 H 1.09000 * 109.47050 * 179.97438 * 16 15 14 47 47 H 1.09002 * 109.46719 * 180.02562 * 17 16 15 48 48 H 1.08993 * 109.47839 * 299.99931 * 17 16 15 49 49 H 0.96994 * 119.99768 * 334.99990 * 20 18 12 50 50 H 0.97010 * 119.99788 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6478 -0.0006 5 6 3.5766 -0.6548 -0.0015 6 6 4.8005 -1.5339 -0.0029 7 6 5.2154 -1.8331 1.4391 8 6 6.4576 -2.7262 1.4375 9 6 6.8665 -3.0202 2.8579 10 8 6.2271 -2.5611 3.7805 11 7 7.9429 -3.7935 3.1028 12 6 8.3402 -4.0798 4.4836 13 1 7.4503 -4.1669 5.1071 14 6 9.2206 -2.9432 5.0071 15 6 9.6349 -3.2419 6.4493 16 6 10.4183 -4.5555 6.4932 17 6 9.5379 -5.6920 5.9698 18 6 9.1238 -5.3932 4.5270 19 1 10.0135 -5.3062 3.9034 20 7 8.2807 -6.4816 4.0257 21 6 8.8566 -7.6020 3.4889 22 1 9.9322 -7.6835 3.4354 23 6 8.0579 -8.6334 3.0144 24 7 6.7471 -8.5342 3.0801 25 14 8.8435 -10.1621 2.2828 26 1 9.7023 -10.8142 3.3037 27 1 7.7814 -11.1067 1.8523 28 1 9.6709 -9.7806 1.1102 29 8 2.3075 -1.0840 -0.0065 30 1 -0.3633 0.0004 -1.0277 31 1 -0.3634 -0.8903 0.5135 32 1 -0.3633 0.8897 0.5142 33 1 1.9822 2.1112 -0.0004 34 1 5.6145 -1.0226 -0.5166 35 1 4.5760 -2.4682 -0.5176 36 1 4.4012 -2.3444 1.9528 37 1 5.4398 -0.8988 1.9538 38 1 7.2718 -2.2152 0.9237 39 1 6.2328 -3.6604 0.9230 40 1 8.4541 -4.1610 2.3650 41 1 8.6623 -2.0075 4.9762 42 1 10.1104 -2.8562 4.3837 43 1 8.7449 -3.3288 7.0725 44 1 10.2618 -2.4320 6.8224 45 1 11.3083 -4.4687 5.8700 46 1 10.7139 -4.7680 7.5206 47 1 10.0959 -6.6279 6.0015 48 1 8.6479 -5.7788 6.5929 49 1 7.3148 -6.4084 4.0741 50 1 6.1889 -9.2548 2.7481 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226704510.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:02 Heat of formation + Delta-G solvation = -36.755124 kcal Electronic energy + Delta-G solvation = -28687.154021 eV Core-core repulsion = 24714.939560 eV Total energy + Delta-G solvation = -3972.214461 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.47499 -39.72870 -37.91529 -35.32962 -34.70445 -34.04229 -33.66238 -32.52364 -31.15078 -29.92133 -28.77812 -27.59095 -25.87112 -23.74273 -23.20787 -22.32102 -21.63105 -21.05325 -20.90867 -19.99500 -19.34346 -17.38639 -17.10311 -16.88645 -16.43450 -15.91318 -15.75674 -15.00235 -14.75428 -14.54442 -14.11429 -14.05895 -13.67896 -13.60837 -13.57564 -13.44200 -13.20226 -12.96791 -12.76594 -12.65582 -12.32566 -12.28743 -11.99838 -11.86233 -11.58365 -11.38899 -11.08738 -10.92679 -10.84271 -10.80491 -10.74428 -10.66916 -10.54958 -10.32971 -10.20333 -9.75843 -9.64211 -9.42933 -8.92786 -8.81318 -8.52792 -7.00300 -5.79807 -3.09493 1.26247 2.47056 2.52213 3.03443 3.39865 3.45182 3.46113 3.56239 3.91083 4.52397 4.53833 4.75906 4.77276 4.81501 4.97794 5.05152 5.06846 5.08214 5.15570 5.24291 5.29250 5.37740 5.43173 5.47271 5.52127 5.56127 5.64273 5.72476 5.74689 5.84488 5.85598 5.90936 5.96913 5.99245 6.05500 6.12658 6.14446 6.24318 6.34328 6.46507 6.49874 6.53456 6.59304 6.87209 6.93280 7.10719 7.58866 7.65124 7.97636 8.37467 8.65185 9.49118 10.05828 10.41229 11.42014 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010400 B = 0.002529 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.737848 B =11070.405686 C =13131.597409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.054 4.054 3 C -0.045 4.045 4 N -0.483 5.483 5 C 0.199 3.801 6 C -0.025 4.025 7 C -0.098 4.098 8 C -0.140 4.140 9 C 0.514 3.486 10 O -0.552 6.552 11 N -0.708 5.708 12 C 0.141 3.859 13 H 0.083 0.917 14 C -0.123 4.123 15 C -0.114 4.114 16 C -0.119 4.119 17 C -0.133 4.133 18 C 0.173 3.827 19 H 0.050 0.950 20 N -0.721 5.721 21 C -0.240 4.240 22 H 0.069 0.931 23 C -0.011 4.011 24 N -0.930 5.930 25 Si 0.905 3.095 26 H -0.287 1.287 27 H -0.292 1.292 28 H -0.286 1.286 29 O -0.199 6.199 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.181 0.819 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.403 0.597 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.057 0.943 45 H 0.057 0.943 46 H 0.054 0.946 47 H 0.065 0.935 48 H 0.056 0.944 49 H 0.385 0.615 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.213 17.384 -5.000 18.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.108 4.108 3 C -0.183 4.183 4 N -0.212 5.212 5 C -0.008 4.008 6 C -0.063 4.063 7 C -0.137 4.137 8 C -0.181 4.181 9 C 0.301 3.699 10 O -0.431 6.431 11 N -0.357 5.357 12 C 0.035 3.965 13 H 0.101 0.899 14 C -0.162 4.162 15 C -0.152 4.152 16 C -0.157 4.157 17 C -0.174 4.174 18 C 0.062 3.938 19 H 0.068 0.932 20 N -0.362 5.362 21 C -0.372 4.372 22 H 0.087 0.913 23 C -0.207 4.207 24 N -0.578 5.578 25 Si 0.736 3.264 26 H -0.213 1.213 27 H -0.218 1.218 28 H -0.213 1.213 29 O -0.087 6.087 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.110 0.890 33 H 0.199 0.801 34 H 0.125 0.875 35 H 0.114 0.886 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.112 0.888 39 H 0.118 0.882 40 H 0.237 0.763 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.073 0.927 47 H 0.083 0.917 48 H 0.075 0.925 49 H 0.219 0.781 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.052 17.868 -4.442 18.853 hybrid contribution -0.339 -1.478 -0.708 1.673 sum -4.390 16.390 -5.150 17.732 Atomic orbital electron populations 1.20263 0.84090 1.04439 1.03668 1.23472 0.95107 0.84681 1.07492 1.23059 0.87923 1.00274 1.07064 1.70439 1.23007 1.09270 1.18496 1.26292 0.84314 0.90297 0.99849 1.20207 0.88927 0.97446 0.99749 1.21293 0.97689 1.00875 0.93854 1.21621 0.99089 1.02128 0.95214 1.20477 0.80049 0.78245 0.91177 1.90673 1.53616 1.52363 1.46439 1.45919 1.29860 1.50728 1.09211 1.21274 0.98176 0.94561 0.82474 0.89934 1.21865 0.99412 0.98565 0.96400 1.21474 1.00018 0.97364 0.96353 1.21578 0.98592 0.95173 1.00389 1.22227 0.99164 0.97559 0.98471 1.20473 0.93435 0.86533 0.93311 0.93196 1.42409 1.05285 1.16253 1.72261 1.19155 0.91474 0.94496 1.32038 0.91284 1.24733 0.95341 0.98612 1.02039 1.69665 1.02427 1.33507 1.52160 0.86310 0.77873 0.83217 0.78990 1.21336 1.21776 1.21323 1.84411 1.17948 1.36563 1.69738 0.89906 0.90238 0.89044 0.80143 0.87481 0.88566 0.90566 0.90406 0.88820 0.88207 0.76251 0.91991 0.92090 0.92016 0.92440 0.92404 0.92727 0.91655 0.92498 0.78146 0.93470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.41 10.43 36.01 0.38 -0.04 16 2 C -0.05 -0.57 7.39 -35.69 -0.26 -0.83 16 3 C -0.04 -0.49 11.80 -17.77 -0.21 -0.70 16 4 N -0.48 -6.45 11.29 -11.10 -0.13 -6.57 16 5 C 0.20 2.50 7.60 -12.95 -0.10 2.40 16 6 C -0.03 -0.25 5.84 -27.89 -0.16 -0.41 16 7 C -0.10 -1.17 4.49 -26.73 -0.12 -1.29 16 8 C -0.14 -1.62 5.70 -27.89 -0.16 -1.78 16 9 C 0.51 8.19 7.79 -10.98 -0.09 8.10 16 10 O -0.55 -10.75 15.65 5.55 0.09 -10.66 16 11 N -0.71 -11.14 4.91 -53.80 -0.26 -11.40 16 12 C 0.14 2.37 1.98 -67.93 -0.13 2.23 16 13 H 0.08 1.62 7.58 -51.93 -0.39 1.22 16 14 C -0.12 -1.75 5.49 -26.73 -0.15 -1.90 16 15 C -0.11 -1.50 5.92 -26.73 -0.16 -1.66 16 16 C -0.12 -1.63 5.92 -26.73 -0.16 -1.79 16 17 C -0.13 -2.30 5.50 -26.71 -0.15 -2.45 16 18 C 0.17 3.22 2.30 -67.90 -0.16 3.06 16 19 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 20 N -0.72 -17.00 4.95 -53.40 -0.26 -17.26 16 21 C -0.24 -6.30 9.93 -15.06 -0.15 -6.45 16 22 H 0.07 1.76 7.83 -52.48 -0.41 1.34 16 23 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 24 N -0.93 -27.29 13.06 55.49 0.72 -26.56 16 25 Si 0.91 21.70 29.55 -169.99 -5.02 16.68 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 28 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 29 O -0.20 -2.54 10.78 5.36 0.06 -2.49 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.18 1.40 8.06 -52.49 -0.42 0.98 16 34 H 0.11 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 37 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16 38 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 40 H 0.40 5.90 8.60 -40.82 -0.35 5.55 16 41 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 48 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 49 H 0.38 10.04 7.80 -40.82 -0.32 9.73 16 50 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 409.68 15.07 6.17 6.17 Total: -1.00 -33.35 409.68 -9.14 -42.49 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: -8.63 Total: 13.52 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -1.87 Total: -3.91 kcal Atomic # 7 Polarization: -61.87 SS G_CDS: 0.07 Total: -61.80 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.14 Total: -13.15 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.35 -9.14 -42.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226704510.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.737 kcal (2) G-P(sol) polarization free energy of solvation -33.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds