Wall clock time and date at job start Tue Mar 31 2020 19:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34325 * 126.44333 * 2 1 4 4 N 1.34475 * 107.67050 * 180.02562 * 3 2 1 5 5 C 1.30259 * 108.70128 * 0.02562 * 4 3 2 6 6 C 1.50694 * 125.61918 * 179.97438 * 5 4 3 7 7 C 1.53001 * 109.47589 * 90.02549 * 6 5 4 8 8 C 1.52993 * 109.47107 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.46859 * 179.97438 * 8 7 6 10 10 O 1.21284 * 120.00188 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99960 * 180.02562 * 9 8 7 12 12 C 1.46507 * 119.99971 * 180.02562 * 11 9 8 13 13 H 1.08996 * 109.46955 * 34.99585 * 12 11 9 14 14 C 1.53002 * 109.46688 * 274.99603 * 12 11 9 15 15 C 1.52997 * 109.46817 * 179.97438 * 14 12 11 16 16 C 1.53006 * 109.47127 * 60.00361 * 15 14 12 17 17 C 1.52999 * 109.46626 * 299.99539 * 16 15 14 18 18 C 1.52996 * 109.47258 * 154.99970 * 12 11 9 19 19 H 1.09000 * 109.47380 * 59.99156 * 18 12 11 20 20 N 1.46510 * 109.46858 * 299.99700 * 18 12 11 21 21 C 1.36936 * 119.99911 * 154.99804 * 20 18 12 22 22 H 1.08004 * 119.99844 * 0.02562 * 21 20 18 23 23 C 1.38806 * 120.00080 * 179.97438 * 21 20 18 24 24 N 1.31619 * 119.99818 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00022 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47003 * 60.00806 * 25 23 21 27 27 H 1.48508 * 109.46880 * 180.02562 * 25 23 21 28 28 H 1.48496 * 109.47042 * 300.00380 * 25 23 21 29 29 O 1.33966 * 108.75762 * 0.22723 * 5 4 3 30 30 H 1.09003 * 109.46927 * 89.97657 * 1 2 3 31 31 H 1.09007 * 109.47162 * 209.97378 * 1 2 3 32 32 H 1.08996 * 109.47071 * 329.97605 * 1 2 3 33 33 H 1.07999 * 126.16754 * 359.97438 * 3 2 1 34 34 H 1.08995 * 109.47186 * 330.01878 * 6 5 4 35 35 H 1.09002 * 109.46810 * 210.02117 * 6 5 4 36 36 H 1.09002 * 109.47023 * 59.99589 * 7 6 5 37 37 H 1.09002 * 109.46692 * 299.99640 * 7 6 5 38 38 H 1.09002 * 109.47333 * 60.00001 * 8 7 6 39 39 H 1.08994 * 109.47578 * 299.99593 * 8 7 6 40 40 H 0.96998 * 120.00021 * 359.97438 * 11 9 8 41 41 H 1.09002 * 109.47070 * 60.00104 * 14 12 11 42 42 H 1.08996 * 109.47407 * 299.99704 * 14 12 11 43 43 H 1.09001 * 109.47502 * 300.00518 * 15 14 12 44 44 H 1.09001 * 109.47289 * 180.02562 * 15 14 12 45 45 H 1.08993 * 109.46955 * 60.00011 * 16 15 14 46 46 H 1.09000 * 109.47050 * 179.97438 * 16 15 14 47 47 H 1.09002 * 109.46719 * 180.02562 * 17 16 15 48 48 H 1.08993 * 109.47839 * 299.99931 * 17 16 15 49 49 H 0.96994 * 119.99768 * 334.99990 * 20 18 12 50 50 H 0.97010 * 119.99788 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6478 -0.0006 5 6 3.5766 -0.6548 -0.0015 6 6 4.8005 -1.5339 -0.0029 7 6 5.2154 -1.8331 1.4391 8 6 6.4576 -2.7262 1.4375 9 6 6.8665 -3.0202 2.8579 10 8 6.2271 -2.5611 3.7805 11 7 7.9429 -3.7935 3.1028 12 6 8.3402 -4.0798 4.4836 13 1 7.4503 -4.1669 5.1071 14 6 9.2206 -2.9432 5.0071 15 6 9.6349 -3.2419 6.4493 16 6 10.4183 -4.5555 6.4932 17 6 9.5379 -5.6920 5.9698 18 6 9.1238 -5.3932 4.5270 19 1 10.0135 -5.3062 3.9034 20 7 8.2807 -6.4816 4.0257 21 6 8.8566 -7.6020 3.4889 22 1 9.9322 -7.6835 3.4354 23 6 8.0579 -8.6334 3.0144 24 7 6.7471 -8.5342 3.0801 25 14 8.8435 -10.1621 2.2828 26 1 9.7023 -10.8142 3.3037 27 1 7.7814 -11.1067 1.8523 28 1 9.6709 -9.7806 1.1102 29 8 2.3075 -1.0840 -0.0065 30 1 -0.3633 0.0004 -1.0277 31 1 -0.3634 -0.8903 0.5135 32 1 -0.3633 0.8897 0.5142 33 1 1.9822 2.1112 -0.0004 34 1 5.6145 -1.0226 -0.5166 35 1 4.5760 -2.4682 -0.5176 36 1 4.4012 -2.3444 1.9528 37 1 5.4398 -0.8988 1.9538 38 1 7.2718 -2.2152 0.9237 39 1 6.2328 -3.6604 0.9230 40 1 8.4541 -4.1610 2.3650 41 1 8.6623 -2.0075 4.9762 42 1 10.1104 -2.8562 4.3837 43 1 8.7449 -3.3288 7.0725 44 1 10.2618 -2.4320 6.8224 45 1 11.3083 -4.4687 5.8700 46 1 10.7139 -4.7680 7.5206 47 1 10.0959 -6.6279 6.0015 48 1 8.6479 -5.7788 6.5929 49 1 7.3148 -6.4084 4.0741 50 1 6.1889 -9.2548 2.7481 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226704510.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:00 Heat of formation + Delta-G solvation = -60.239891 kcal Electronic energy + Delta-G solvation = -28688.172397 eV Core-core repulsion = 24714.939560 eV Total energy + Delta-G solvation = -3973.232837 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -44.33605 -41.05533 -39.26418 -36.27151 -35.79960 -35.60436 -35.02960 -33.26976 -32.97412 -31.02232 -29.96593 -29.03528 -26.70250 -25.61070 -24.25567 -23.28014 -22.78025 -22.40996 -21.80422 -21.30184 -20.64502 -19.14187 -18.26033 -17.80685 -17.57603 -17.26354 -16.81486 -16.61186 -15.79936 -15.66195 -15.46826 -15.30572 -15.07548 -14.68303 -14.62544 -14.54561 -14.20915 -14.10711 -13.89853 -13.62060 -13.59122 -13.25831 -13.12622 -12.92128 -12.88827 -12.75150 -12.54033 -12.31242 -12.25408 -12.15214 -12.05194 -11.99264 -11.76987 -11.62923 -11.56713 -11.42963 -11.10629 -10.96091 -10.66376 -9.87418 -9.61908 -8.97618 -7.89300 -5.18198 0.42053 1.49904 1.51840 1.57722 1.63975 1.71269 1.76873 2.36855 2.58598 3.10230 3.43720 3.69747 3.76568 3.81954 3.86206 3.99044 4.01507 4.11771 4.15311 4.27041 4.32212 4.34238 4.38215 4.45371 4.52721 4.59297 4.61955 4.64819 4.65883 4.70240 4.71589 4.80251 4.96157 5.03134 5.04674 5.09597 5.18013 5.20522 5.24203 5.25380 5.30430 5.32215 5.36014 5.48097 5.54735 5.60089 5.73359 6.30250 6.70784 6.71992 7.37079 7.38982 8.10967 8.35461 9.33454 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010400 B = 0.002529 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.737848 B =11070.405686 C =13131.597409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.058 4.058 3 C -0.064 4.064 4 N -0.509 5.509 5 C 0.180 3.820 6 C -0.018 4.018 7 C -0.088 4.088 8 C -0.130 4.130 9 C 0.506 3.494 10 O -0.595 6.595 11 N -0.706 5.706 12 C 0.147 3.853 13 H 0.047 0.953 14 C -0.114 4.114 15 C -0.111 4.111 16 C -0.109 4.109 17 C -0.129 4.129 18 C 0.173 3.827 19 H 0.060 0.940 20 N -0.731 5.731 21 C -0.230 4.230 22 H 0.079 0.921 23 C -0.074 4.074 24 N -0.969 5.969 25 Si 0.968 3.032 26 H -0.283 1.283 27 H -0.302 1.302 28 H -0.274 1.274 29 O -0.219 6.219 30 H 0.100 0.900 31 H 0.079 0.921 32 H 0.114 0.886 33 H 0.207 0.793 34 H 0.129 0.871 35 H 0.113 0.887 36 H 0.047 0.953 37 H 0.060 0.940 38 H 0.131 0.869 39 H 0.111 0.889 40 H 0.410 0.590 41 H 0.055 0.945 42 H 0.080 0.920 43 H 0.050 0.950 44 H 0.086 0.914 45 H 0.073 0.927 46 H 0.071 0.929 47 H 0.049 0.951 48 H 0.037 0.963 49 H 0.368 0.632 50 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.513 18.519 -5.956 19.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.111 4.111 3 C -0.201 4.201 4 N -0.238 5.238 5 C -0.027 4.027 6 C -0.055 4.055 7 C -0.127 4.127 8 C -0.169 4.169 9 C 0.294 3.706 10 O -0.476 6.476 11 N -0.355 5.355 12 C 0.041 3.959 13 H 0.065 0.935 14 C -0.153 4.153 15 C -0.149 4.149 16 C -0.147 4.147 17 C -0.170 4.170 18 C 0.064 3.936 19 H 0.078 0.922 20 N -0.370 5.370 21 C -0.362 4.362 22 H 0.097 0.903 23 C -0.266 4.266 24 N -0.620 5.620 25 Si 0.798 3.202 26 H -0.209 1.209 27 H -0.229 1.229 28 H -0.200 1.200 29 O -0.107 6.107 30 H 0.119 0.881 31 H 0.097 0.903 32 H 0.133 0.867 33 H 0.224 0.776 34 H 0.147 0.853 35 H 0.131 0.869 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.149 0.851 39 H 0.129 0.871 40 H 0.246 0.754 41 H 0.073 0.927 42 H 0.099 0.901 43 H 0.068 0.932 44 H 0.105 0.895 45 H 0.092 0.908 46 H 0.090 0.910 47 H 0.068 0.932 48 H 0.056 0.944 49 H 0.199 0.801 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -2.289 19.028 -5.397 19.910 hybrid contribution -0.893 -1.758 -0.341 2.001 sum -3.183 17.269 -5.738 18.474 Atomic orbital electron populations 1.20494 0.81122 1.05568 1.05128 1.24322 0.96768 0.84010 1.05951 1.23571 0.87343 1.01767 1.07463 1.70412 1.24438 1.09824 1.19123 1.26761 0.84912 0.90577 1.00401 1.20258 0.88772 0.98196 0.98315 1.21129 0.96943 0.99680 0.94979 1.21637 0.99966 1.02919 0.92416 1.21271 0.79300 0.77367 0.92633 1.90653 1.54773 1.53995 1.48177 1.45932 1.30047 1.50543 1.08974 1.21105 0.96991 0.94876 0.82884 0.93466 1.21792 0.99309 0.96726 0.97447 1.21482 1.00042 0.98038 0.95387 1.21508 0.98138 0.93551 1.01512 1.22109 0.98994 0.98628 0.97263 1.20674 0.93116 0.85849 0.93960 0.92167 1.42575 1.04894 1.17040 1.72479 1.19535 0.91872 0.94796 1.30017 0.90319 1.25478 0.95757 1.01667 1.03713 1.69837 1.03804 1.34124 1.54268 0.85293 0.76719 0.79682 0.78520 1.20930 1.22922 1.20013 1.84415 1.18459 1.37755 1.70026 0.88133 0.90252 0.86710 0.77574 0.85318 0.86911 0.93393 0.92096 0.85076 0.87127 0.75412 0.92665 0.90095 0.93152 0.89534 0.90801 0.91005 0.93191 0.94368 0.80077 0.94355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.71 10.43 71.24 0.74 0.04 16 2 C -0.06 -1.18 7.39 24.79 0.18 -1.00 16 3 C -0.06 -1.37 11.80 83.39 0.98 -0.38 16 4 N -0.51 -13.53 11.29 -303.84 -3.43 -16.96 16 5 C 0.18 4.52 7.60 88.34 0.67 5.19 16 6 C -0.02 -0.34 5.84 29.85 0.17 -0.16 16 7 C -0.09 -2.13 4.49 30.59 0.14 -1.99 16 8 C -0.13 -2.87 5.70 29.85 0.17 -2.70 16 9 C 0.51 16.25 7.79 87.66 0.68 16.93 16 10 O -0.59 -24.07 15.65 -3.04 -0.05 -24.12 16 11 N -0.71 -22.02 4.91 -442.52 -2.17 -24.19 16 12 C 0.15 4.96 1.98 44.99 0.09 5.05 16 13 H 0.05 1.94 7.58 -2.39 -0.02 1.92 16 14 C -0.11 -3.05 5.49 30.59 0.17 -2.88 16 15 C -0.11 -2.68 5.92 30.60 0.18 -2.50 16 16 C -0.11 -2.71 5.92 30.60 0.18 -2.53 16 17 C -0.13 -4.40 5.50 30.61 0.17 -4.23 16 18 C 0.17 6.35 2.30 45.00 0.10 6.45 16 19 H 0.06 2.12 8.08 -2.39 -0.02 2.10 16 20 N -0.73 -34.90 4.95 -322.85 -1.60 -36.49 16 21 C -0.23 -12.02 9.93 84.03 0.83 -11.19 16 22 H 0.08 3.90 7.83 -2.91 -0.02 3.87 16 23 C -0.07 -4.09 5.50 84.86 0.47 -3.63 16 24 N -0.97 -58.29 13.06 21.65 0.28 -58.01 16 25 Si 0.97 44.75 29.55 68.60 2.03 46.77 16 26 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 27 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 28 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 29 O -0.22 -5.64 10.78 -3.73 -0.04 -5.68 16 30 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.21 2.95 8.06 -2.91 -0.02 2.93 16 34 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.05 1.40 8.10 -2.39 -0.02 1.38 16 37 H 0.06 1.66 8.10 -2.39 -0.02 1.64 16 38 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.41 11.56 8.60 -92.71 -0.80 10.76 16 41 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.08 1.87 8.14 -2.39 -0.02 1.86 16 43 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 47 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 48 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 49 H 0.37 19.91 7.80 -92.71 -0.72 19.18 16 50 H 0.25 14.65 8.31 -92.70 -0.77 13.88 16 Total: -1.00 -75.20 409.68 0.37 -74.83 By element: Atomic # 1 Polarization: 43.97 SS G_CDS: -0.58 Total: 43.39 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: 5.94 Total: 0.47 kcal Atomic # 7 Polarization: -128.74 SS G_CDS: -6.92 Total: -135.66 kcal Atomic # 8 Polarization: -29.71 SS G_CDS: -0.09 Total: -29.80 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Total: -75.20 0.37 -74.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226704510.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.589 kcal (2) G-P(sol) polarization free energy of solvation -75.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds