Wall clock time and date at job start Tue Mar 31 2020 19:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.34253 * 126.52822 * 2 1 4 4 C 1.34051 * 108.22972 * 179.97438 * 3 2 1 5 5 C 1.50692 * 125.37903 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.47436 * 299.97722 * 5 4 3 7 7 C 1.53004 * 109.47120 * 59.98194 * 5 4 3 8 8 N 1.29937 * 109.23967 * 359.72673 * 4 3 2 9 9 C 1.36065 * 108.47898 * 0.43906 * 8 4 3 10 10 C 1.47418 * 126.45228 * 179.82394 * 9 8 4 11 11 O 1.21614 * 120.00526 * 185.98278 * 10 9 8 12 12 N 1.34781 * 120.00100 * 5.98551 * 10 9 8 13 13 C 1.46964 * 120.64724 * 7.02783 * 12 10 9 14 14 C 1.53194 * 108.88812 * 126.46710 * 13 12 10 15 15 C 1.53046 * 109.31206 * 54.55121 * 14 13 12 16 16 C 1.53034 * 109.53780 * 298.63772 * 15 14 13 17 17 C 1.46921 * 120.63565 * 186.84805 * 12 10 9 18 18 H 1.08996 * 109.58655 * 113.67789 * 17 12 10 19 19 C 1.53002 * 109.58401 * 353.39311 * 17 12 10 20 20 N 1.46501 * 109.46988 * 68.63974 * 19 17 12 21 21 C 1.36937 * 119.99772 * 174.64366 * 20 19 17 22 22 H 1.07993 * 120.00207 * 359.97438 * 21 20 19 23 23 C 1.38808 * 119.99642 * 179.72204 * 21 20 19 24 24 N 1.31622 * 120.00435 * 359.97438 * 23 21 20 25 25 Si 1.86809 * 120.00045 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.46834 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46875 * 120.00084 * 25 23 21 28 28 H 1.48499 * 109.47092 * 240.00279 * 25 23 21 29 29 H 1.08998 * 109.47050 * 270.02441 * 1 2 3 30 30 H 1.09003 * 109.47017 * 30.02098 * 1 2 3 31 31 H 1.09004 * 109.47567 * 150.02108 * 1 2 3 32 32 H 1.09007 * 109.47211 * 179.97438 * 5 4 3 33 33 H 1.08999 * 109.47134 * 60.00062 * 6 5 4 34 34 H 1.08999 * 109.47194 * 180.02562 * 6 5 4 35 35 H 1.08995 * 109.47341 * 300.00293 * 6 5 4 36 36 H 1.09003 * 109.47076 * 59.99725 * 7 5 4 37 37 H 1.08999 * 109.47195 * 179.97438 * 7 5 4 38 38 H 1.08999 * 109.46782 * 299.99528 * 7 5 4 39 39 H 1.08999 * 109.59842 * 6.60437 * 13 12 10 40 40 H 1.09002 * 109.58069 * 246.31513 * 13 12 10 41 41 H 1.09005 * 109.49719 * 294.60461 * 14 13 12 42 42 H 1.09000 * 109.49967 * 174.50467 * 14 13 12 43 43 H 1.08999 * 109.45601 * 178.61461 * 15 14 13 44 44 H 1.09001 * 109.44732 * 58.65566 * 15 14 13 45 45 H 1.09003 * 109.50260 * 301.41138 * 16 15 14 46 46 H 1.09000 * 109.52613 * 181.33336 * 16 15 14 47 47 H 1.09001 * 109.47274 * 308.63916 * 19 17 12 48 48 H 1.08999 * 109.46850 * 188.63467 * 19 17 12 49 49 H 0.96995 * 120.00135 * 354.63880 * 20 19 17 50 50 H 0.96999 * 120.00299 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0788 0.0000 4 6 3.5788 0.6579 0.0006 5 6 4.7930 1.5505 0.0002 6 6 4.7773 2.4325 -1.2499 7 6 4.7761 2.4349 1.2486 8 7 3.6002 -0.6413 0.0068 9 6 2.3170 -1.0937 0.0005 10 6 1.8852 -2.5032 0.0006 11 8 0.7062 -2.7782 -0.1151 12 7 2.7971 -3.4874 0.1291 13 6 4.2023 -3.1730 0.4232 14 6 4.6402 -3.9672 1.6578 15 6 4.3638 -5.4547 1.4270 16 6 2.8628 -5.6704 1.2213 17 6 2.4047 -4.8955 -0.0183 18 1 2.8766 -5.3152 -0.9067 19 6 0.8836 -4.9929 -0.1509 20 7 0.4674 -4.4189 -1.4330 21 6 -0.8431 -4.4932 -1.8232 22 1 -1.5697 -4.9751 -1.1861 23 6 -1.2384 -3.9443 -3.0353 24 7 -0.3538 -3.3520 -3.8094 25 14 -3.0260 -4.0461 -3.5681 26 1 -3.8128 -4.7559 -2.5278 27 1 -3.5676 -2.6752 -3.7483 28 1 -3.1185 -4.7877 -4.8513 29 1 -0.3633 0.0004 1.0276 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3634 -0.8902 -0.5135 32 1 5.6945 0.9377 0.0013 33 1 3.8759 3.0453 -1.2509 34 1 5.6557 3.0778 -1.2503 35 1 4.7893 1.8024 -2.1392 36 1 4.7874 1.8065 2.1393 37 1 5.6546 3.0802 1.2486 38 1 3.8747 3.0477 1.2476 39 1 4.3047 -2.1058 0.6200 40 1 4.8243 -3.4489 -0.4283 41 1 4.0811 -3.6241 2.5283 42 1 5.7065 -3.8174 1.8274 43 1 4.6972 -6.0248 2.2941 44 1 4.9037 -5.7911 0.5418 45 1 2.3203 -5.3113 2.0959 46 1 2.6633 -6.7327 1.0805 47 1 0.4119 -4.4430 0.6635 48 1 0.5812 -6.0391 -0.1060 49 1 1.1201 -3.9863 -2.0053 50 1 -0.6301 -2.9681 -4.6562 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265670753.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:24 Heat of formation + Delta-G solvation = 33.399819 kcal Electronic energy + Delta-G solvation = -31256.902679 eV Core-core repulsion = 27287.730364 eV Total energy + Delta-G solvation = -3969.172315 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.23006 -39.82414 -36.83360 -35.86792 -34.99956 -34.00823 -32.32758 -31.85426 -31.51504 -29.69858 -27.47707 -27.18841 -25.90639 -24.33130 -23.42486 -22.86821 -22.35907 -21.54936 -20.46452 -20.04178 -18.59878 -17.17148 -16.70882 -16.46033 -15.98425 -15.46131 -14.97407 -14.72997 -14.50825 -14.35241 -14.19830 -13.72361 -13.57553 -13.48846 -13.32617 -13.08807 -12.78361 -12.78085 -12.60314 -12.44695 -12.42761 -12.05244 -11.97280 -11.71153 -11.55409 -11.51401 -11.28705 -11.17070 -10.86963 -10.80715 -10.76712 -10.70226 -10.63195 -10.23612 -9.82463 -9.53550 -9.48604 -8.77743 -8.42980 -8.34881 -7.90681 -6.48138 -5.53672 -2.73062 1.46715 2.30989 2.67584 3.48566 3.54531 3.59903 3.62116 3.89281 4.00888 4.58253 4.76096 4.76725 4.83324 4.99575 5.04460 5.09198 5.10805 5.25265 5.32300 5.37496 5.45323 5.46637 5.51821 5.64929 5.65626 5.72960 5.75255 5.78994 5.80518 5.83884 5.92548 5.97612 6.00309 6.06651 6.10274 6.16454 6.18153 6.23462 6.28145 6.46203 6.54915 6.61740 6.67456 6.85008 7.07806 7.42019 7.72085 7.89491 8.12478 8.63982 8.99980 9.75185 10.36145 10.70722 11.69983 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009695 B = 0.004818 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2887.520196 B = 5809.825223 C = 7989.648196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.033 3.967 3 O -0.198 6.198 4 C 0.183 3.817 5 C 0.006 3.994 6 C -0.151 4.151 7 C -0.149 4.149 8 N -0.455 5.455 9 C -0.056 4.056 10 C 0.560 3.440 11 O -0.442 6.442 12 N -0.600 5.600 13 C 0.084 3.916 14 C -0.132 4.132 15 C -0.118 4.118 16 C -0.125 4.125 17 C 0.142 3.858 18 H 0.068 0.932 19 C 0.159 3.841 20 N -0.696 5.696 21 C -0.205 4.205 22 H 0.066 0.934 23 C -0.022 4.022 24 N -0.937 5.937 25 Si 0.899 3.101 26 H -0.283 1.283 27 H -0.295 1.295 28 H -0.296 1.296 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.127 0.873 32 H 0.112 0.888 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.133 0.867 40 H 0.053 0.947 41 H 0.059 0.941 42 H 0.066 0.934 43 H 0.058 0.942 44 H 0.061 0.939 45 H 0.064 0.936 46 H 0.071 0.929 47 H 0.043 0.957 48 H 0.015 0.985 49 H 0.380 0.620 50 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.351 8.924 12.470 21.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.022 4.022 3 O -0.086 6.086 4 C -0.024 4.024 5 C -0.014 4.014 6 C -0.209 4.209 7 C -0.207 4.207 8 N -0.186 5.186 9 C -0.176 4.176 10 C 0.344 3.656 11 O -0.310 6.310 12 N -0.336 5.336 13 C -0.039 4.039 14 C -0.170 4.170 15 C -0.156 4.156 16 C -0.164 4.164 17 C 0.039 3.961 18 H 0.085 0.915 19 C 0.031 3.969 20 N -0.339 5.339 21 C -0.337 4.337 22 H 0.084 0.916 23 C -0.216 4.216 24 N -0.588 5.588 25 Si 0.732 3.268 26 H -0.208 1.208 27 H -0.223 1.223 28 H -0.224 1.224 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.145 0.855 32 H 0.130 0.870 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.150 0.850 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.083 0.917 46 H 0.090 0.910 47 H 0.061 0.939 48 H 0.033 0.967 49 H 0.213 0.787 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 13.986 8.375 12.410 20.488 hybrid contribution -1.126 0.501 -0.696 1.416 sum 12.860 8.876 11.714 19.528 Atomic orbital electron populations 1.20652 0.82510 1.06294 1.03898 1.23715 0.95017 0.83049 1.00462 1.84243 1.17733 1.36548 1.70029 1.26152 0.84178 0.90558 1.01560 1.19694 0.90046 0.94224 0.97402 1.21893 1.02925 0.99568 0.96467 1.21892 1.02968 0.99507 0.96336 1.70497 1.21935 1.08049 1.18114 1.21844 0.87947 0.96431 1.11390 1.16806 0.86156 0.81948 0.80641 1.91164 1.15629 1.80331 1.43911 1.47518 1.08499 1.05294 1.72327 1.22439 0.81430 1.04129 0.95927 1.21915 1.00605 0.95614 0.98869 1.21516 0.96429 0.96334 1.01310 1.21887 0.95794 1.00186 0.98566 1.21497 0.97766 0.80162 0.96706 0.91453 1.20943 0.88987 0.95126 0.91820 1.42308 1.07589 1.67029 1.16937 1.19218 0.85983 1.28214 1.00267 0.91588 1.24604 0.97021 1.02142 0.97870 1.69680 1.32177 1.44265 1.12679 0.86196 0.85644 0.76945 0.78026 1.20812 1.22306 1.22361 0.89837 0.90782 0.85493 0.87023 0.91839 0.91032 0.91741 0.91993 0.91033 0.91871 0.84987 0.92861 0.92186 0.91557 0.92344 0.92023 0.91679 0.91024 0.93935 0.96735 0.78687 0.94126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.26 9.95 36.01 0.36 -0.90 16 2 C 0.03 0.58 7.44 -35.08 -0.26 0.32 16 3 O -0.20 -3.07 10.73 6.52 0.07 -3.00 16 4 C 0.18 2.58 6.81 -13.08 -0.09 2.49 16 5 C 0.01 0.05 3.39 -91.78 -0.31 -0.26 16 6 C -0.15 -1.27 9.18 37.16 0.34 -0.93 16 7 C -0.15 -1.11 9.18 37.16 0.34 -0.77 16 8 N -0.46 -7.43 7.81 -7.66 -0.06 -7.49 16 9 C -0.06 -1.06 6.68 -83.02 -0.55 -1.61 16 10 C 0.56 11.64 7.01 -12.52 -0.09 11.55 16 11 O -0.44 -10.52 8.58 5.27 0.05 -10.48 16 12 N -0.60 -10.96 2.98 -166.45 -0.50 -11.46 16 13 C 0.08 1.26 6.11 -3.69 -0.02 1.24 16 14 C -0.13 -1.61 6.08 -26.61 -0.16 -1.77 16 15 C -0.12 -1.42 5.88 -26.69 -0.16 -1.57 16 16 C -0.13 -1.78 5.37 -26.61 -0.14 -1.92 16 17 C 0.14 2.58 2.93 -67.60 -0.20 2.38 16 18 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 19 C 0.16 3.50 4.87 -4.04 -0.02 3.48 16 20 N -0.70 -18.72 3.22 -59.91 -0.19 -18.92 16 21 C -0.20 -6.01 9.72 -15.06 -0.15 -6.16 16 22 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 23 C -0.02 -0.66 5.50 -17.43 -0.10 -0.75 16 24 N -0.94 -29.65 13.06 55.49 0.72 -28.93 16 25 Si 0.90 23.48 29.55 -169.99 -5.02 18.45 16 26 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 27 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 28 H -0.30 -7.77 7.11 56.52 0.40 -7.36 16 29 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.13 2.58 6.37 -51.93 -0.33 2.25 16 32 H 0.11 0.92 8.14 -51.92 -0.42 0.50 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.13 2.03 4.09 -61.54 -0.25 1.78 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.04 1.00 6.33 -51.93 -0.33 0.68 16 48 H 0.02 0.33 8.13 -51.93 -0.42 -0.10 16 49 H 0.38 11.03 6.99 -40.82 -0.29 10.75 16 50 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 389.80 15.07 5.87 5.87 Total: -1.00 -34.15 389.80 -8.62 -42.77 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -8.35 Total: 8.36 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: -1.21 Total: 4.81 kcal Atomic # 7 Polarization: -66.76 SS G_CDS: -0.02 Total: -66.79 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: 0.12 Total: -13.48 kcal Atomic # 14 Polarization: 23.48 SS G_CDS: -5.02 Total: 18.45 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.15 -8.62 -42.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265670753.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.171 kcal (2) G-P(sol) polarization free energy of solvation -34.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds