Wall clock time and date at job start Tue Mar 31 2020 19:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.34253 * 126.52822 * 2 1 4 4 C 1.34051 * 108.22972 * 179.97438 * 3 2 1 5 5 C 1.50692 * 125.37903 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.47436 * 299.97722 * 5 4 3 7 7 C 1.53004 * 109.47120 * 59.98194 * 5 4 3 8 8 N 1.29937 * 109.23967 * 359.72673 * 4 3 2 9 9 C 1.36065 * 108.47898 * 0.43906 * 8 4 3 10 10 C 1.47418 * 126.45228 * 179.82394 * 9 8 4 11 11 O 1.21614 * 120.00526 * 185.98278 * 10 9 8 12 12 N 1.34781 * 120.00100 * 5.98551 * 10 9 8 13 13 C 1.46964 * 120.64724 * 7.02783 * 12 10 9 14 14 C 1.53194 * 108.88812 * 126.46710 * 13 12 10 15 15 C 1.53046 * 109.31206 * 54.55121 * 14 13 12 16 16 C 1.53034 * 109.53780 * 298.63772 * 15 14 13 17 17 C 1.46921 * 120.63565 * 186.84805 * 12 10 9 18 18 H 1.08996 * 109.58655 * 113.67789 * 17 12 10 19 19 C 1.53002 * 109.58401 * 353.39311 * 17 12 10 20 20 N 1.46501 * 109.46988 * 68.63974 * 19 17 12 21 21 C 1.36937 * 119.99772 * 174.64366 * 20 19 17 22 22 H 1.07993 * 120.00207 * 359.97438 * 21 20 19 23 23 C 1.38808 * 119.99642 * 179.72204 * 21 20 19 24 24 N 1.31622 * 120.00435 * 359.97438 * 23 21 20 25 25 Si 1.86809 * 120.00045 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.46834 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46875 * 120.00084 * 25 23 21 28 28 H 1.48499 * 109.47092 * 240.00279 * 25 23 21 29 29 H 1.08998 * 109.47050 * 270.02441 * 1 2 3 30 30 H 1.09003 * 109.47017 * 30.02098 * 1 2 3 31 31 H 1.09004 * 109.47567 * 150.02108 * 1 2 3 32 32 H 1.09007 * 109.47211 * 179.97438 * 5 4 3 33 33 H 1.08999 * 109.47134 * 60.00062 * 6 5 4 34 34 H 1.08999 * 109.47194 * 180.02562 * 6 5 4 35 35 H 1.08995 * 109.47341 * 300.00293 * 6 5 4 36 36 H 1.09003 * 109.47076 * 59.99725 * 7 5 4 37 37 H 1.08999 * 109.47195 * 179.97438 * 7 5 4 38 38 H 1.08999 * 109.46782 * 299.99528 * 7 5 4 39 39 H 1.08999 * 109.59842 * 6.60437 * 13 12 10 40 40 H 1.09002 * 109.58069 * 246.31513 * 13 12 10 41 41 H 1.09005 * 109.49719 * 294.60461 * 14 13 12 42 42 H 1.09000 * 109.49967 * 174.50467 * 14 13 12 43 43 H 1.08999 * 109.45601 * 178.61461 * 15 14 13 44 44 H 1.09001 * 109.44732 * 58.65566 * 15 14 13 45 45 H 1.09003 * 109.50260 * 301.41138 * 16 15 14 46 46 H 1.09000 * 109.52613 * 181.33336 * 16 15 14 47 47 H 1.09001 * 109.47274 * 308.63916 * 19 17 12 48 48 H 1.08999 * 109.46850 * 188.63467 * 19 17 12 49 49 H 0.96995 * 120.00135 * 354.63880 * 20 19 17 50 50 H 0.96999 * 120.00299 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0788 0.0000 4 6 3.5788 0.6579 0.0006 5 6 4.7930 1.5505 0.0002 6 6 4.7773 2.4325 -1.2499 7 6 4.7761 2.4349 1.2486 8 7 3.6002 -0.6413 0.0068 9 6 2.3170 -1.0937 0.0005 10 6 1.8852 -2.5032 0.0006 11 8 0.7062 -2.7782 -0.1151 12 7 2.7971 -3.4874 0.1291 13 6 4.2023 -3.1730 0.4232 14 6 4.6402 -3.9672 1.6578 15 6 4.3638 -5.4547 1.4270 16 6 2.8628 -5.6704 1.2213 17 6 2.4047 -4.8955 -0.0183 18 1 2.8766 -5.3152 -0.9067 19 6 0.8836 -4.9929 -0.1509 20 7 0.4674 -4.4189 -1.4330 21 6 -0.8431 -4.4932 -1.8232 22 1 -1.5697 -4.9751 -1.1861 23 6 -1.2384 -3.9443 -3.0353 24 7 -0.3538 -3.3520 -3.8094 25 14 -3.0260 -4.0461 -3.5681 26 1 -3.8128 -4.7559 -2.5278 27 1 -3.5676 -2.6752 -3.7483 28 1 -3.1185 -4.7877 -4.8513 29 1 -0.3633 0.0004 1.0276 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3634 -0.8902 -0.5135 32 1 5.6945 0.9377 0.0013 33 1 3.8759 3.0453 -1.2509 34 1 5.6557 3.0778 -1.2503 35 1 4.7893 1.8024 -2.1392 36 1 4.7874 1.8065 2.1393 37 1 5.6546 3.0802 1.2486 38 1 3.8747 3.0477 1.2476 39 1 4.3047 -2.1058 0.6200 40 1 4.8243 -3.4489 -0.4283 41 1 4.0811 -3.6241 2.5283 42 1 5.7065 -3.8174 1.8274 43 1 4.6972 -6.0248 2.2941 44 1 4.9037 -5.7911 0.5418 45 1 2.3203 -5.3113 2.0959 46 1 2.6633 -6.7327 1.0805 47 1 0.4119 -4.4430 0.6635 48 1 0.5812 -6.0391 -0.1060 49 1 1.1201 -3.9863 -2.0053 50 1 -0.6301 -2.9681 -4.6562 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265670753.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:22 Heat of formation + Delta-G solvation = 11.149362 kcal Electronic energy + Delta-G solvation = -31257.867531 eV Core-core repulsion = 27287.730364 eV Total energy + Delta-G solvation = -3970.137167 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -44.50824 -41.32208 -38.22140 -36.71894 -36.60743 -35.66167 -33.69167 -33.56198 -32.84561 -31.49094 -28.52524 -28.09617 -27.50455 -25.93198 -24.70507 -24.36728 -23.81455 -22.83277 -21.82373 -21.22389 -19.92454 -19.14206 -17.99002 -17.96740 -17.12005 -16.89230 -16.67547 -16.10491 -15.85514 -15.56482 -15.45737 -15.20574 -15.02339 -14.83912 -14.73497 -14.38205 -14.30096 -14.04365 -13.89676 -13.75665 -13.55940 -13.30263 -13.10774 -13.04534 -12.83763 -12.79239 -12.55625 -12.43668 -12.22424 -12.10511 -12.07230 -11.97776 -11.95277 -11.80851 -11.71416 -11.36673 -10.90861 -10.78182 -10.01927 -9.83057 -9.40300 -8.62925 -7.83068 -5.02993 0.11925 1.02884 1.44378 1.45110 1.46239 1.55947 2.08358 2.44799 2.62080 2.80019 3.50176 3.58898 3.65349 3.82980 3.91517 3.93413 4.06151 4.07610 4.15880 4.19136 4.26323 4.35546 4.40848 4.44436 4.51236 4.52417 4.62463 4.76557 4.78080 4.84218 4.87337 4.89173 4.91399 4.98297 5.03569 5.08301 5.09267 5.12727 5.15503 5.21972 5.30495 5.32749 5.33040 5.49147 5.51685 5.54785 5.93481 6.36786 6.41594 6.66247 7.41414 7.45755 8.21085 8.45310 9.41773 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009695 B = 0.004818 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2887.520196 B = 5809.825223 C = 7989.648196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.025 3.975 3 O -0.195 6.195 4 C 0.198 3.802 5 C 0.005 3.995 6 C -0.148 4.148 7 C -0.144 4.144 8 N -0.468 5.468 9 C -0.085 4.085 10 C 0.555 3.445 11 O -0.487 6.487 12 N -0.599 5.599 13 C 0.079 3.921 14 C -0.123 4.123 15 C -0.113 4.113 16 C -0.117 4.117 17 C 0.144 3.856 18 H 0.057 0.943 19 C 0.163 3.837 20 N -0.705 5.705 21 C -0.207 4.207 22 H 0.065 0.935 23 C -0.082 4.082 24 N -0.975 5.975 25 Si 0.966 3.034 26 H -0.270 1.270 27 H -0.297 1.297 28 H -0.295 1.295 29 H 0.104 0.896 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.128 0.872 33 H 0.056 0.944 34 H 0.104 0.896 35 H 0.047 0.953 36 H 0.058 0.942 37 H 0.101 0.899 38 H 0.056 0.944 39 H 0.132 0.868 40 H 0.053 0.947 41 H 0.055 0.945 42 H 0.096 0.904 43 H 0.087 0.913 44 H 0.066 0.934 45 H 0.061 0.939 46 H 0.086 0.914 47 H 0.028 0.972 48 H 0.018 0.982 49 H 0.364 0.636 50 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.517 9.680 14.157 23.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.031 4.031 3 O -0.083 6.083 4 C -0.011 4.011 5 C -0.014 4.014 6 C -0.206 4.206 7 C -0.202 4.202 8 N -0.197 5.197 9 C -0.203 4.203 10 C 0.341 3.659 11 O -0.359 6.359 12 N -0.334 5.334 13 C -0.043 4.043 14 C -0.162 4.162 15 C -0.150 4.150 16 C -0.156 4.156 17 C 0.041 3.959 18 H 0.075 0.925 19 C 0.036 3.964 20 N -0.345 5.345 21 C -0.340 4.340 22 H 0.083 0.917 23 C -0.273 4.273 24 N -0.628 5.628 25 Si 0.796 3.204 26 H -0.194 1.194 27 H -0.225 1.225 28 H -0.223 1.223 29 H 0.122 0.878 30 H 0.113 0.887 31 H 0.102 0.898 32 H 0.146 0.854 33 H 0.075 0.925 34 H 0.122 0.878 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.120 0.880 38 H 0.076 0.924 39 H 0.149 0.851 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.115 0.885 43 H 0.105 0.895 44 H 0.084 0.916 45 H 0.080 0.920 46 H 0.104 0.896 47 H 0.046 0.954 48 H 0.036 0.964 49 H 0.196 0.804 50 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 16.193 9.088 14.152 23.347 hybrid contribution -1.662 0.363 -1.144 2.050 sum 14.531 9.451 13.008 21.672 Atomic orbital electron populations 1.20511 0.82177 1.05039 1.04885 1.23853 0.95596 0.83376 1.00256 1.84267 1.18246 1.35707 1.70076 1.27372 0.84751 0.90649 0.98319 1.20101 0.88125 0.94223 0.98988 1.21907 1.04223 0.99397 0.95083 1.21889 1.04171 0.99285 0.94827 1.70486 1.20534 1.09158 1.19544 1.21747 0.89511 0.95869 1.13197 1.17236 0.86068 0.83195 0.79413 1.91139 1.17252 1.81241 1.46281 1.47707 1.09633 1.04893 1.71162 1.22649 0.79375 1.04862 0.97452 1.21876 1.02269 0.95223 0.96792 1.21512 0.94286 0.96439 1.02796 1.21846 0.97661 1.00159 0.95914 1.21450 0.94898 0.80925 0.98603 0.92455 1.20962 0.91884 0.94241 0.89297 1.42373 1.06460 1.67377 1.18310 1.19528 0.87142 1.27182 1.00105 0.91686 1.25345 1.01064 1.02662 0.98200 1.69854 1.34076 1.45977 1.12936 0.85150 0.80976 0.76652 0.77579 1.19414 1.22476 1.22307 0.87756 0.88729 0.89817 0.85381 0.92474 0.87752 0.93366 0.92316 0.87988 0.92449 0.85131 0.92891 0.92596 0.88530 0.89460 0.91573 0.91997 0.89551 0.95421 0.96395 0.80429 0.94775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.37 9.95 71.24 0.71 -1.66 16 2 C 0.03 0.91 7.44 25.19 0.19 1.09 16 3 O -0.20 -5.99 10.73 0.41 0.00 -5.99 16 4 C 0.20 5.37 6.81 88.39 0.60 5.97 16 5 C 0.00 0.08 3.39 -11.54 -0.04 0.04 16 6 C -0.15 -2.15 9.18 71.98 0.66 -1.49 16 7 C -0.14 -1.70 9.18 71.98 0.66 -1.04 16 8 N -0.47 -15.19 7.81 -293.04 -2.29 -17.48 16 9 C -0.08 -3.29 6.68 40.41 0.27 -3.02 16 10 C 0.56 24.18 7.01 86.66 0.61 24.78 16 11 O -0.49 -24.67 8.58 -4.07 -0.03 -24.70 16 12 N -0.60 -22.32 2.98 -798.77 -2.38 -24.71 16 13 C 0.08 2.30 6.11 86.36 0.53 2.82 16 14 C -0.12 -2.69 6.08 30.67 0.19 -2.51 16 15 C -0.11 -2.36 5.88 30.62 0.18 -2.18 16 16 C -0.12 -3.15 5.37 30.67 0.16 -2.99 16 17 C 0.14 5.33 2.93 44.98 0.13 5.46 16 18 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 19 C 0.16 7.45 4.87 86.38 0.42 7.88 16 20 N -0.70 -39.73 3.22 -343.45 -1.11 -40.84 16 21 C -0.21 -12.60 9.72 84.03 0.82 -11.79 16 22 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 23 C -0.08 -5.07 5.50 84.86 0.47 -4.61 16 24 N -0.98 -64.19 13.06 21.65 0.28 -63.91 16 25 Si 0.97 49.77 29.55 68.60 2.03 51.80 16 26 H -0.27 -13.13 7.11 99.48 0.71 -12.42 16 27 H -0.30 -15.26 7.11 99.48 0.71 -14.56 16 28 H -0.30 -15.09 7.11 99.48 0.71 -14.39 16 29 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 30 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 31 H 0.08 3.67 6.37 -2.38 -0.02 3.65 16 32 H 0.13 1.72 8.14 -2.38 -0.02 1.70 16 33 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.13 3.93 4.09 -21.37 -0.09 3.84 16 40 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 42 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 47 H 0.03 1.38 6.33 -2.39 -0.02 1.36 16 48 H 0.02 0.82 8.13 -2.39 -0.02 0.80 16 49 H 0.36 22.37 6.99 -92.71 -0.65 21.72 16 50 H 0.24 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -78.54 389.80 3.27 -75.27 By element: Atomic # 1 Polarization: 33.56 SS G_CDS: 0.21 Total: 33.78 kcal Atomic # 6 Polarization: 10.22 SS G_CDS: 6.55 Total: 16.77 kcal Atomic # 7 Polarization: -141.44 SS G_CDS: -5.49 Total: -146.93 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -0.03 Total: -30.69 kcal Atomic # 14 Polarization: 49.77 SS G_CDS: 2.03 Total: 51.80 kcal Total: -78.54 3.27 -75.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265670753.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.424 kcal (2) G-P(sol) polarization free energy of solvation -78.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds