Wall clock time and date at job start Tue Mar 31 2020 19:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.34260 * 126.52265 * 2 1 4 4 C 1.34047 * 108.22220 * 179.97438 * 3 2 1 5 5 C 1.50705 * 125.37573 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.47249 * 300.02882 * 5 4 3 7 7 C 1.53005 * 109.46910 * 60.02938 * 5 4 3 8 8 N 1.29928 * 109.24983 * 0.02562 * 4 3 2 9 9 C 1.36071 * 108.47335 * 359.97438 * 8 4 3 10 10 C 1.47422 * 126.44840 * 179.97438 * 9 8 4 11 11 O 1.21603 * 120.00298 * 180.02562 * 10 9 8 12 12 N 1.34777 * 119.99875 * 0.02647 * 10 9 8 13 13 C 1.46502 * 119.99953 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.47027 * 180.02562 * 13 12 10 15 15 C 1.52996 * 109.46930 * 179.97438 * 14 13 12 16 16 H 1.08997 * 110.64557 * 305.70036 * 15 14 13 17 17 C 1.55160 * 110.72209 * 182.55835 * 15 14 13 18 18 C 1.54908 * 101.58417 * 206.13924 * 17 15 14 19 19 N 1.47430 * 104.83335 * 37.00741 * 18 17 15 20 20 C 1.36937 * 125.64648 * 155.90795 * 19 18 17 21 21 H 1.07999 * 119.99955 * 342.04535 * 20 19 18 22 22 C 1.38807 * 119.99599 * 162.04863 * 20 19 18 23 23 N 1.31617 * 119.99920 * 156.25012 * 22 20 19 24 24 Si 1.86802 * 120.00433 * 336.24607 * 22 20 19 25 25 H 1.48496 * 109.47136 * 84.66747 * 24 22 20 26 26 H 1.48494 * 109.47461 * 204.67714 * 24 22 20 27 27 H 1.48509 * 109.46935 * 324.67537 * 24 22 20 28 28 C 1.47323 * 108.73351 * 335.71599 * 19 18 17 29 29 H 1.08995 * 109.47179 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.47162 * 120.02304 * 1 2 3 31 31 H 1.09003 * 109.46447 * 240.01962 * 1 2 3 32 32 H 1.08997 * 109.47270 * 180.02562 * 5 4 3 33 33 H 1.08999 * 109.47076 * 299.99609 * 6 5 4 34 34 H 1.09006 * 109.47275 * 59.99876 * 6 5 4 35 35 H 1.09003 * 109.47281 * 179.97438 * 6 5 4 36 36 H 1.08995 * 109.47329 * 60.00258 * 7 5 4 37 37 H 1.09003 * 109.47196 * 180.02562 * 7 5 4 38 38 H 1.09006 * 109.47005 * 299.99751 * 7 5 4 39 39 H 0.97004 * 119.99943 * 359.97438 * 12 10 9 40 40 H 1.09004 * 109.47089 * 300.00100 * 13 12 10 41 41 H 1.08992 * 109.47041 * 60.00285 * 13 12 10 42 42 H 1.08994 * 109.47159 * 299.99889 * 14 13 12 43 43 H 1.09001 * 109.47030 * 59.99948 * 14 13 12 44 44 H 1.09001 * 110.99848 * 324.21280 * 17 15 14 45 45 H 1.08998 * 111.00459 * 88.02007 * 17 15 14 46 46 H 1.09000 * 110.36747 * 155.84921 * 18 17 15 47 47 H 1.08997 * 110.36378 * 278.06286 * 18 17 15 48 48 H 0.96999 * 120.00049 * 179.97438 * 23 22 20 49 49 H 1.09000 * 110.06391 * 241.87040 * 28 19 18 50 50 H 1.08998 * 109.84293 * 120.61272 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.3061 1.0789 0.0000 4 6 3.5788 0.6580 0.0006 5 6 4.7930 1.5507 0.0002 6 6 4.7766 2.4336 -1.2492 7 6 4.7767 2.4343 1.2493 8 7 3.6003 -0.6411 0.0004 9 6 2.3170 -1.0936 0.0002 10 6 1.8854 -2.5032 -0.0005 11 8 0.7004 -2.7762 -0.0010 12 7 2.8041 -3.4892 -0.0006 13 6 2.3752 -4.8901 -0.0008 14 6 3.6052 -5.8001 -0.0003 15 6 3.1572 -7.2630 0.0002 16 1 2.4754 -7.4559 0.8284 17 6 4.3827 -8.2124 0.0655 18 6 3.8235 -9.4891 -0.6106 19 7 2.9497 -8.9930 -1.6894 20 6 2.6092 -9.6837 -2.8218 21 1 3.1949 -10.5369 -3.1305 22 6 1.5114 -9.2870 -3.5729 23 7 1.4376 -9.6032 -4.8483 24 14 0.1385 -8.3043 -2.7734 25 1 0.4934 -6.8624 -2.7798 26 1 -1.1220 -8.5074 -3.5317 27 1 -0.0472 -8.7621 -1.3729 28 6 2.4994 -7.6330 -1.3460 29 1 -0.3633 1.0276 -0.0005 30 1 -0.3633 -0.5142 -0.8898 31 1 -0.3632 -0.5136 0.8902 32 1 5.6944 0.9380 0.0004 33 1 4.7882 1.8041 -2.1390 34 1 3.8751 3.0464 -1.2494 35 1 5.6545 3.0796 -1.2493 36 1 4.7884 1.8054 2.1394 37 1 5.6547 3.0803 1.2488 38 1 3.8752 3.0471 1.2491 39 1 3.7494 -3.2714 -0.0006 40 1 1.7774 -5.0872 0.8891 41 1 1.7776 -5.0869 -0.8908 42 1 4.2033 -5.6031 -0.8900 43 1 4.2025 -5.6031 0.8900 44 1 5.2218 -7.8066 -0.4996 45 1 4.6692 -8.4100 1.0984 46 1 4.6361 -10.0860 -1.0247 47 1 3.2488 -10.0767 0.1053 48 1 0.6703 -9.3264 -5.3731 49 1 1.4142 -7.6124 -1.2464 50 1 2.8163 -6.9322 -2.1184 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267556493.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:59 Heat of formation + Delta-G solvation = -32.961811 kcal Electronic energy + Delta-G solvation = -28794.927956 eV Core-core repulsion = 24822.877985 eV Total energy + Delta-G solvation = -3972.049971 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -44.62029 -40.77674 -39.66069 -36.84450 -36.55455 -35.92165 -34.79926 -33.11425 -33.03207 -30.96337 -29.13389 -28.12170 -28.04069 -26.47649 -25.10693 -23.99626 -23.35426 -22.29566 -21.88464 -21.44518 -20.76488 -19.03338 -18.83896 -18.12011 -17.80945 -17.19917 -16.99726 -16.65632 -16.22850 -16.08465 -15.52559 -15.41876 -15.17720 -14.96705 -14.81033 -14.49797 -14.36913 -14.21477 -13.96958 -13.83640 -13.61238 -13.53059 -13.20052 -13.06885 -12.96053 -12.76627 -12.63855 -12.53121 -12.41625 -12.20552 -12.15705 -12.00668 -11.97263 -11.86297 -11.80552 -11.47753 -11.30203 -11.17622 -10.78562 -10.33834 -9.86693 -9.09185 -8.23900 -5.46250 -0.08325 0.84412 1.24731 1.30648 1.33410 1.39969 1.94601 2.09431 2.35178 2.68482 2.98502 3.34204 3.45139 3.58810 3.61142 3.80734 3.88184 3.97738 4.03314 4.08527 4.15884 4.19005 4.22076 4.37292 4.47636 4.49172 4.53171 4.57730 4.70882 4.74374 4.75014 4.82969 4.84274 4.88874 4.91970 4.96466 4.99747 5.02398 5.09167 5.10813 5.17497 5.25797 5.27510 5.28644 5.29957 5.49448 5.66813 6.05964 6.18738 6.49201 6.74238 6.98001 7.51758 8.09437 8.96543 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015451 B = 0.002400 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.703855 B =11662.012599 C =12366.427957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.043 3.957 3 O -0.191 6.191 4 C 0.206 3.794 5 C 0.002 3.998 6 C -0.148 4.148 7 C -0.146 4.146 8 N -0.478 5.478 9 C -0.104 4.104 10 C 0.594 3.406 11 O -0.565 6.565 12 N -0.702 5.702 13 C 0.118 3.882 14 C -0.103 4.103 15 C -0.088 4.088 16 H 0.091 0.909 17 C -0.106 4.106 18 C 0.119 3.881 19 N -0.632 5.632 20 C -0.231 4.231 21 H 0.065 0.935 22 C -0.037 4.037 23 N -0.953 5.953 24 Si 0.947 3.053 25 H -0.282 1.282 26 H -0.309 1.309 27 H -0.274 1.274 28 C 0.115 3.885 29 H 0.107 0.893 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.125 0.875 33 H 0.051 0.949 34 H 0.061 0.939 35 H 0.099 0.901 36 H 0.055 0.945 37 H 0.098 0.902 38 H 0.061 0.939 39 H 0.418 0.582 40 H 0.074 0.926 41 H 0.039 0.961 42 H 0.072 0.928 43 H 0.110 0.890 44 H 0.077 0.923 45 H 0.110 0.890 46 H 0.046 0.954 47 H 0.031 0.969 48 H 0.262 0.738 49 H 0.005 0.995 50 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.687 29.245 16.990 34.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.014 4.014 3 O -0.078 6.078 4 C -0.004 4.004 5 C -0.017 4.017 6 C -0.206 4.206 7 C -0.204 4.204 8 N -0.207 5.207 9 C -0.222 4.222 10 C 0.381 3.619 11 O -0.444 6.444 12 N -0.352 5.352 13 C -0.006 4.006 14 C -0.141 4.141 15 C -0.108 4.108 16 H 0.109 0.891 17 C -0.144 4.144 18 C -0.005 4.005 19 N -0.359 5.359 20 C -0.360 4.360 21 H 0.082 0.918 22 C -0.231 4.231 23 N -0.600 5.600 24 Si 0.778 3.222 25 H -0.209 1.209 26 H -0.238 1.238 27 H -0.200 1.200 28 C -0.009 4.009 29 H 0.125 0.875 30 H 0.112 0.888 31 H 0.118 0.882 32 H 0.142 0.858 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.118 0.882 36 H 0.075 0.925 37 H 0.117 0.883 38 H 0.080 0.920 39 H 0.255 0.745 40 H 0.093 0.907 41 H 0.058 0.942 42 H 0.091 0.909 43 H 0.128 0.872 44 H 0.096 0.904 45 H 0.128 0.872 46 H 0.065 0.935 47 H 0.049 0.951 48 H 0.071 0.929 49 H 0.023 0.977 50 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 8.311 28.588 16.794 34.182 hybrid contribution -1.453 0.159 -0.558 1.565 sum 6.858 28.747 16.236 33.720 Atomic orbital electron populations 1.20554 0.80911 1.05564 1.05257 1.24156 0.96108 0.83097 0.98083 1.84334 1.18162 1.35694 1.69635 1.27085 0.84763 0.90053 0.98503 1.20096 0.88230 0.94280 0.99082 1.21912 1.04342 0.99375 0.94955 1.21901 1.04314 0.99322 0.94848 1.70700 1.21124 1.10136 1.18721 1.21384 0.89957 0.95093 1.15813 1.16984 0.85304 0.83471 0.76159 1.90795 1.17453 1.83959 1.52227 1.45715 1.10533 1.05610 1.73389 1.21461 0.98226 0.79319 1.01576 1.21686 0.96177 0.91620 1.04650 1.22095 0.98221 0.94982 0.95462 0.89060 1.22743 0.96193 0.93435 1.02040 1.21913 0.92819 0.96566 0.89184 1.45091 1.57159 1.12845 1.20791 1.18678 1.07917 1.11286 0.98105 0.91762 1.25520 1.00400 1.01280 0.95919 1.69965 1.31363 1.52337 1.06368 0.85942 0.79736 0.78727 0.77788 1.20890 1.23819 1.20044 1.21911 0.95777 0.86572 0.96644 0.87452 0.88846 0.88221 0.85760 0.92942 0.92000 0.88220 0.92536 0.88284 0.92021 0.74531 0.90738 0.94213 0.90946 0.87161 0.90448 0.87176 0.93514 0.95115 0.92925 0.97741 0.96009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.14 9.13 71.24 0.65 -0.49 16 2 C 0.04 0.95 7.44 25.19 0.19 1.14 16 3 O -0.19 -3.77 10.73 0.38 0.00 -3.77 16 4 C 0.21 3.84 6.81 88.39 0.60 4.44 16 5 C 0.00 0.02 3.39 -11.54 -0.04 -0.02 16 6 C -0.15 -1.15 9.18 71.98 0.66 -0.49 16 7 C -0.15 -0.98 9.18 71.98 0.66 -0.32 16 8 N -0.48 -11.27 11.06 -293.04 -3.24 -14.51 16 9 C -0.10 -2.73 6.99 40.41 0.28 -2.45 16 10 C 0.59 17.93 7.81 86.66 0.68 18.61 16 11 O -0.56 -19.98 15.61 -4.04 -0.06 -20.04 16 12 N -0.70 -18.59 5.55 -466.37 -2.59 -21.18 16 13 C 0.12 3.32 5.54 86.38 0.48 3.80 16 14 C -0.10 -2.46 4.72 30.59 0.14 -2.32 16 15 C -0.09 -2.64 2.95 -9.60 -0.03 -2.67 16 16 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 17 C -0.11 -2.87 6.54 31.99 0.21 -2.66 16 18 C 0.12 4.52 7.23 86.85 0.63 5.15 16 19 N -0.63 -31.42 3.22 -691.22 -2.22 -33.64 16 20 C -0.23 -13.87 10.56 84.03 0.89 -12.98 16 21 H 0.06 4.11 8.06 -2.91 -0.02 4.09 16 22 C -0.04 -2.27 5.43 84.86 0.46 -1.81 16 23 N -0.95 -62.71 13.97 21.65 0.30 -62.41 16 24 Si 0.95 51.14 24.39 68.60 1.67 52.82 16 25 H -0.28 -14.86 6.83 99.48 0.68 -14.18 16 26 H -0.31 -16.75 7.11 99.48 0.71 -16.04 16 27 H -0.27 -14.33 6.87 99.48 0.68 -13.64 16 28 C 0.12 5.08 4.01 86.67 0.35 5.42 16 29 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.09 1.77 8.07 -2.39 -0.02 1.75 16 31 H 0.10 1.73 8.08 -2.39 -0.02 1.71 16 32 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 35 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 36 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.10 0.22 8.14 -2.39 -0.02 0.20 16 38 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 39 H 0.42 9.28 8.20 -92.71 -0.76 8.52 16 40 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 41 H 0.04 1.41 7.59 -2.39 -0.02 1.39 16 42 H 0.07 1.80 8.01 -2.39 -0.02 1.78 16 43 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.08 2.01 8.05 -2.39 -0.02 1.99 16 45 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 46 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 47 H 0.03 1.13 8.14 -2.39 -0.02 1.12 16 48 H 0.26 16.40 8.31 -92.71 -0.77 15.63 16 49 H 0.01 0.25 3.55 -2.39 -0.01 0.24 16 50 H 0.02 1.03 7.73 -2.39 -0.02 1.01 16 Total: -1.00 -81.01 401.86 0.79 -80.22 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: 0.12 Total: 10.15 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: 6.81 Total: 12.36 kcal Atomic # 7 Polarization: -123.98 SS G_CDS: -7.75 Total: -131.73 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: -0.06 Total: -23.81 kcal Atomic # 14 Polarization: 51.14 SS G_CDS: 1.67 Total: 52.82 kcal Total: -81.01 0.79 -80.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267556493.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.258 kcal (2) G-P(sol) polarization free energy of solvation -81.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds