Wall clock time and date at job start Tue Mar 31 2020 20:11:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50708 * 1
3 3 N 1.33690 * 126.27267 * 2 1
4 4 C 1.30615 * 108.99539 * 180.25524 * 3 2 1
5 5 C 1.50706 * 125.42434 * 179.74841 * 4 3 2
6 6 C 1.52996 * 109.46898 * 300.02720 * 5 4 3
7 7 C 1.53004 * 109.46948 * 60.02478 * 5 4 3
8 8 O 1.33670 * 109.15475 * 359.76814 * 4 3 2
9 9 C 1.35343 * 107.68098 * 359.97438 * 8 4 3
10 10 C 1.46726 * 126.64116 * 179.97438 * 9 8 4
11 11 O 1.21686 * 119.99470 * 180.02562 * 10 9 8
12 12 N 1.34774 * 119.99955 * 0.02793 * 10 9 8
13 13 C 1.46503 * 119.99541 * 185.20474 * 12 10 9
14 14 C 1.53001 * 109.46794 * 174.51830 * 13 12 10
15 15 C 1.52996 * 109.47432 * 54.51696 * 13 12 10
16 16 N 1.46492 * 109.47223 * 59.99751 * 15 13 12
17 17 C 1.36941 * 120.00198 * 180.02562 * 16 15 13
18 18 H 1.08002 * 119.99461 * 359.97438 * 17 16 15
19 19 C 1.38805 * 120.00296 * 180.02562 * 17 16 15
20 20 N 1.31617 * 120.00313 * 179.97438 * 19 17 16
21 21 Si 1.86809 * 119.99950 * 359.97438 * 19 17 16
22 22 H 1.48498 * 109.46717 * 90.00268 * 21 19 17
23 23 H 1.48501 * 109.46817 * 209.99853 * 21 19 17
24 24 H 1.48500 * 109.47002 * 330.00059 * 21 19 17
25 25 C 1.52997 * 109.46900 * 294.51032 * 13 12 10
26 26 C 1.53000 * 117.50168 * 2.33333 * 25 13 12
27 27 C 1.52999 * 117.50435 * 293.66786 * 25 13 12
28 28 H 1.08997 * 109.47010 * 270.13331 * 1 2 3
29 29 H 1.09002 * 109.46572 * 30.13482 * 1 2 3
30 30 H 1.09004 * 109.46979 * 150.13091 * 1 2 3
31 31 H 1.09004 * 109.46769 * 180.02562 * 5 4 3
32 32 H 1.08998 * 109.47122 * 59.99888 * 6 5 4
33 33 H 1.09006 * 109.47007 * 180.02562 * 6 5 4
34 34 H 1.09004 * 109.47169 * 299.99862 * 6 5 4
35 35 H 1.08998 * 109.47316 * 300.00261 * 7 5 4
36 36 H 1.09003 * 109.46646 * 59.99967 * 7 5 4
37 37 H 1.08998 * 109.46860 * 179.97438 * 7 5 4
38 38 H 0.96999 * 120.00344 * 4.92694 * 12 10 9
39 39 H 1.08994 * 109.47398 * 59.99593 * 14 13 12
40 40 H 1.09000 * 109.47119 * 179.97438 * 14 13 12
41 41 H 1.09009 * 109.47005 * 299.99731 * 14 13 12
42 42 H 1.08999 * 109.47298 * 180.02562 * 15 13 12
43 43 H 1.09000 * 109.46958 * 299.99588 * 15 13 12
44 44 H 0.97003 * 120.00253 * 359.97438 * 16 15 13
45 45 H 0.96998 * 120.00509 * 180.02562 * 20 19 17
46 46 H 1.09005 * 115.54916 * 148.00046 * 25 13 12
47 47 H 1.09004 * 117.49881 * 359.97438 * 26 25 13
48 48 H 1.08998 * 117.50182 * 145.01574 * 26 25 13
49 49 H 1.08996 * 117.50035 * 214.98112 * 27 25 13
50 50 H 1.08996 * 117.49442 * 0.02562 * 27 25 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 7 2.2980 1.0778 0.0000
4 6 3.5452 0.6899 -0.0055
5 6 4.7441 1.6031 -0.0128
6 6 4.7062 2.4844 -1.2629
7 6 4.7191 2.4874 1.2356
8 8 3.5890 -0.6461 -0.0041
9 6 2.3137 -1.0992 0.0032
10 6 1.8827 -2.5017 0.0067
11 8 0.6967 -2.7736 0.0128
12 7 2.8005 -3.4887 0.0031
13 6 2.3733 -4.8856 -0.1086
14 6 3.6038 -5.7873 -0.2259
15 6 1.4976 -5.0534 -1.3519
16 7 2.2643 -4.6805 -2.5431
17 6 1.6831 -4.7504 -3.7811
18 1 0.6596 -5.0808 -3.8792
19 6 2.4098 -4.3976 -4.9099
20 7 1.8513 -4.4652 -6.0998
21 14 4.1804 -3.8268 -4.7403
22 1 5.0885 -4.9985 -4.8263
23 1 4.4994 -2.8721 -5.8321
24 1 4.3606 -3.1560 -3.4277
25 6 1.5726 -5.2750 1.1357
26 6 1.3248 -4.1892 2.1848
27 6 2.3183 -5.3181 2.4709
28 1 -0.3633 0.0024 1.0276
29 1 -0.3632 0.8888 -0.5160
30 1 -0.3633 -0.8912 -0.5118
31 1 5.6558 1.0057 -0.0168
32 1 3.7944 3.0817 -1.2589
33 1 5.5735 3.1446 -1.2684
34 1 4.7239 1.8544 -2.1522
35 1 3.8073 3.0847 1.2396
36 1 4.7460 1.8595 2.1261
37 1 5.5864 3.1476 1.2305
38 1 3.7440 -3.2739 0.0704
39 1 4.2277 -5.6677 0.6598
40 1 3.2860 -6.8267 -0.3085
41 1 4.1743 -5.5098 -1.1124
42 1 1.1794 -6.0926 -1.4347
43 1 0.6210 -4.4110 -1.2682
44 1 3.1835 -4.3834 -2.4550
45 1 2.3592 -4.2191 -6.8887
46 1 0.7836 -6.0100 0.9760
47 1 1.7326 -3.1975 1.9887
48 1 0.3730 -4.2100 2.7155
49 1 2.0197 -6.0810 3.1898
50 1 3.3793 -5.0686 2.4630
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001269638764.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:11:09
Heat of formation + Delta-G solvation = 27.781829 kcal
Electronic energy + Delta-G solvation = -30948.869535 eV
Core-core repulsion = 26979.453606 eV
Total energy + Delta-G solvation = -3969.415929 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.200 amu
Computer time = 1.06 seconds
Orbital eigenvalues (eV)
-43.45326 -40.43368 -37.38170 -36.09392 -35.28612 -35.05869 -33.47314 -31.69914
-30.88128 -30.02400 -27.66850 -27.51925 -26.39208 -24.48133 -23.58484 -22.24741
-22.17287 -21.18004 -20.76570 -20.50819 -19.20208 -18.08292 -17.78429 -16.96563
-16.36824 -16.07413 -15.48680 -14.86284 -14.69665 -14.52821 -14.37789 -13.92609
-13.77759 -13.63735 -13.38796 -13.18164 -13.06712 -12.86204 -12.51503 -12.34324
-12.26731 -12.25442 -12.08613 -11.93848 -11.64617 -11.61221 -11.39827 -11.24250
-11.07678 -10.94316 -10.91676 -10.86861 -10.74444 -10.27839 -10.20754 -10.05963
-9.59057 -9.53292 -8.95205 -8.80942 -8.66390 -7.16092 -5.73516 -3.07390
0.87941 2.34441 2.41633 3.15591 3.34038 3.34826 3.35710 3.42430
3.76347 3.93490 4.48563 4.59690 4.64637 4.67893 4.69387 4.81984
4.91154 5.01092 5.06165 5.25760 5.30264 5.33063 5.38745 5.43510
5.50489 5.54382 5.58157 5.58657 5.62799 5.66683 5.69155 5.72752
5.84703 5.88399 5.91616 5.94766 5.99673 6.03804 6.07291 6.19550
6.23805 6.35686 6.38412 6.45044 6.75508 6.95902 7.47348 7.70008
8.03890 8.27819 8.45417 9.24668 9.96865 10.17031 11.45394
Molecular weight = 335.20amu
Principal moments of inertia in cm(-1)
A = 0.008368 B = 0.005195 C = 0.003873
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3345.086947 B = 5388.360058 C = 7228.587494
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.079 4.079
2 C 0.078 3.922
3 N -0.482 5.482
4 C 0.217 3.783
5 C 0.001 3.999
6 C -0.146 4.146
7 C -0.142 4.142
8 O -0.190 6.190
9 C -0.113 4.113
10 C 0.618 3.382
11 O -0.492 6.492
12 N -0.709 5.709
13 C 0.195 3.805
14 C -0.149 4.149
15 C 0.146 3.854
16 N -0.751 5.751
17 C -0.235 4.235
18 H 0.090 0.910
19 C 0.004 3.996
20 N -0.935 5.935
21 Si 0.879 3.121
22 H -0.284 1.284
23 H -0.291 1.291
24 H -0.281 1.281
25 C -0.143 4.143
26 C -0.158 4.158
27 C -0.185 4.185
28 H 0.078 0.922
29 H 0.075 0.925
30 H 0.099 0.901
31 H 0.099 0.901
32 H 0.071 0.929
33 H 0.073 0.927
34 H 0.061 0.939
35 H 0.071 0.929
36 H 0.058 0.942
37 H 0.072 0.928
38 H 0.398 0.602
39 H 0.056 0.944
40 H 0.079 0.921
41 H 0.066 0.934
42 H 0.035 0.965
43 H 0.058 0.942
44 H 0.358 0.642
45 H 0.258 0.742
46 H 0.113 0.887
47 H 0.088 0.912
48 H 0.089 0.911
49 H 0.090 0.910
50 H 0.089 0.911
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.636 9.067 19.530 22.532
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C -0.046 4.046
3 N -0.211 5.211
4 C 0.011 3.989
5 C -0.019 4.019
6 C -0.203 4.203
7 C -0.200 4.200
8 O -0.076 6.076
9 C -0.168 4.168
10 C 0.403 3.597
11 O -0.368 6.368
12 N -0.360 5.360
13 C 0.110 3.890
14 C -0.206 4.206
15 C 0.018 3.982
16 N -0.397 5.397
17 C -0.365 4.365
18 H 0.108 0.892
19 C -0.192 4.192
20 N -0.583 5.583
21 Si 0.710 3.290
22 H -0.211 1.211
23 H -0.218 1.218
24 H -0.207 1.207
25 C -0.162 4.162
26 C -0.195 4.195
27 C -0.222 4.222
28 H 0.097 0.903
29 H 0.094 0.906
30 H 0.118 0.882
31 H 0.117 0.883
32 H 0.090 0.910
33 H 0.092 0.908
34 H 0.081 0.919
35 H 0.090 0.910
36 H 0.077 0.923
37 H 0.091 0.909
38 H 0.232 0.768
39 H 0.075 0.925
40 H 0.098 0.902
41 H 0.085 0.915
42 H 0.053 0.947
43 H 0.076 0.924
44 H 0.191 0.809
45 H 0.068 0.932
46 H 0.131 0.869
47 H 0.107 0.893
48 H 0.108 0.892
49 H 0.109 0.891
50 H 0.107 0.893
Dipole moment (debyes) X Y Z Total
from point charges 5.468 9.385 19.330 22.173
hybrid contribution 2.085 -0.164 -0.159 2.098
sum 7.554 9.221 19.170 22.574
Atomic orbital electron populations
1.20385 0.85248 1.04701 1.03306 1.22041 0.98339 0.86328 0.97888
1.70234 1.00221 1.31084 1.19601 1.26482 0.95673 0.79243 0.97483
1.19741 0.90462 0.93146 0.98509 1.21861 1.03445 0.99451 0.95572
1.21838 1.03472 0.99331 0.95351 1.84436 1.30066 1.23681 1.69447
1.23149 0.81096 0.96671 1.15856 1.16051 0.85998 0.80898 0.76711
1.90847 1.15541 1.81252 1.49204 1.45950 1.09437 1.06242 1.74355
1.20227 0.95072 0.79085 0.94617 1.22003 0.96496 1.00303 1.01819
1.21088 0.94501 0.98874 0.83711 1.42638 1.12552 1.81680 1.02832
1.19062 0.98334 1.37047 0.82011 0.89172 1.24622 0.97482 1.01844
0.95214 1.69689 1.36326 1.55114 0.97214 0.86616 0.87056 0.78563
0.76733 1.21070 1.21783 1.20741 1.22505 1.01897 1.02677 0.89150
1.22920 1.00037 0.94390 1.02155 1.22996 0.97854 1.02159 0.99168
0.90312 0.90647 0.88239 0.88301 0.90996 0.90832 0.91948 0.91041
0.92265 0.90871 0.76804 0.92479 0.90249 0.91524 0.94678 0.92398
0.80942 0.93170 0.86903 0.89347 0.89203 0.89135 0.89291
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -1.12 9.87 36.01 0.36 -0.76 16
2 C 0.08 1.26 7.16 -82.46 -0.59 0.67 16
3 N -0.48 -7.32 11.26 -7.07 -0.08 -7.40 16
4 C 0.22 2.98 6.82 -12.79 -0.09 2.89 16
5 C 0.00 0.01 3.39 -91.77 -0.31 -0.30 16
6 C -0.15 -1.29 9.17 37.16 0.34 -0.95 16
7 C -0.14 -1.06 9.18 37.16 0.34 -0.72 16
8 O -0.19 -2.91 10.58 4.41 0.05 -2.86 16
9 C -0.11 -1.89 7.18 -36.84 -0.26 -2.15 16
10 C 0.62 10.66 5.05 -12.83 -0.06 10.59 16
11 O -0.49 -9.24 10.73 5.20 0.06 -9.18 16
12 N -0.71 -11.02 4.18 -48.89 -0.20 -11.22 16
13 C 0.20 3.03 0.55 -131.82 -0.07 2.96 16
14 C -0.15 -2.02 8.18 37.16 0.30 -1.71 16
15 C 0.15 2.95 4.83 -4.05 -0.02 2.93 16
16 N -0.75 -18.12 4.98 -59.92 -0.30 -18.42 16
17 C -0.23 -6.81 10.47 -15.06 -0.16 -6.97 16
18 H 0.09 2.82 8.06 -52.49 -0.42 2.40 16
19 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16
20 N -0.93 -30.00 13.97 55.49 0.78 -29.22 16
21 Si 0.88 22.57 27.74 -169.99 -4.71 17.85 16
22 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16
23 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16
24 H -0.28 -6.83 6.52 56.52 0.37 -6.46 16
25 C -0.14 -1.93 4.81 -90.62 -0.44 -2.37 16
26 C -0.16 -2.07 8.28 -26.69 -0.22 -2.29 16
27 C -0.18 -2.06 9.68 -26.69 -0.26 -2.32 16
28 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16
29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16
30 H 0.10 1.57 6.48 -51.93 -0.34 1.23 16
31 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16
32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16
33 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16
34 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16
35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16
36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16
37 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16
38 H 0.40 5.52 8.28 -40.82 -0.34 5.18 16
39 H 0.06 0.63 6.92 -51.93 -0.36 0.27 16
40 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16
41 H 0.07 1.02 6.86 -51.92 -0.36 0.66 16
42 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16
43 H 0.06 1.31 5.96 -51.93 -0.31 1.00 16
44 H 0.36 8.39 4.21 -40.82 -0.17 8.21 16
45 H 0.26 7.89 8.31 -40.82 -0.34 7.56 16
46 H 0.11 1.51 8.06 -51.93 -0.42 1.09 16
47 H 0.09 1.27 5.12 -51.93 -0.27 1.00 16
48 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16
49 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16
50 H 0.09 0.94 7.21 -51.93 -0.37 0.57 16
LS Contribution 395.61 15.07 5.96 5.96
Total: -1.00 -34.30 395.61 -7.71 -42.01
By element:
Atomic # 1 Polarization: 20.99 SS G_CDS: -8.02 Total: 12.97 kcal
Atomic # 6 Polarization: 0.74 SS G_CDS: -1.24 Total: -0.50 kcal
Atomic # 7 Polarization: -66.45 SS G_CDS: 0.19 Total: -66.26 kcal
Atomic # 8 Polarization: -12.14 SS G_CDS: 0.10 Total: -12.04 kcal
Atomic # 14 Polarization: 22.57 SS G_CDS: -4.71 Total: 17.85 kcal
Total LS contribution 5.96 Total: 5.96 kcal
Total: -34.30 -7.71 -42.01 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001269638764.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 69.796 kcal
(2) G-P(sol) polarization free energy of solvation -34.302 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.495 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.713 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.015 kcal
(6) G-S(sol) free energy of system = (1) + (5) 27.782 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.06 seconds