Wall clock time and date at job start Tue Mar 31 2020 19:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29933 * 125.37374 * 2 1 4 4 C 1.36069 * 108.47139 * 180.19705 * 3 2 1 5 5 C 1.47426 * 126.44720 * 179.82133 * 4 3 2 6 6 O 1.21610 * 119.99771 * 179.69157 * 5 4 3 7 7 N 1.34777 * 119.99972 * 359.68838 * 5 4 3 8 8 C 1.46496 * 120.00258 * 179.97438 * 7 5 4 9 9 H 1.09002 * 109.47135 * 325.00366 * 8 7 5 10 10 C 1.52995 * 109.47630 * 205.00405 * 8 7 5 11 11 N 1.46499 * 109.47232 * 54.99842 * 10 8 7 12 12 C 1.36935 * 120.00152 * 180.02562 * 11 10 8 13 13 H 1.07997 * 119.99846 * 359.97438 * 12 11 10 14 14 C 1.38812 * 119.99978 * 180.02562 * 12 11 10 15 15 N 1.31617 * 119.99940 * 180.02562 * 14 12 11 16 16 Si 1.86802 * 120.00047 * 359.97438 * 14 12 11 17 17 H 1.48507 * 109.46866 * 89.99915 * 16 14 12 18 18 H 1.48499 * 109.47417 * 209.99938 * 16 14 12 19 19 H 1.48501 * 109.47303 * 330.00213 * 16 14 12 20 20 C 1.53000 * 109.47129 * 85.00009 * 8 7 5 21 21 C 1.53008 * 109.46851 * 60.00021 * 20 8 7 22 22 C 1.52999 * 109.47170 * 179.97438 * 21 20 8 23 23 C 1.53003 * 109.46786 * 60.00458 * 22 21 20 24 24 C 1.52999 * 109.47299 * 299.99811 * 23 22 21 25 25 C 1.53003 * 109.47112 * 300.00475 * 20 8 7 26 26 C 1.36090 * 107.10537 * 359.56219 * 4 3 2 27 27 C 1.50697 * 126.52628 * 180.26212 * 26 4 3 28 28 O 1.34042 * 125.37944 * 179.71114 * 2 1 3 29 29 H 1.09002 * 109.46717 * 180.30468 * 1 2 3 30 30 H 1.08995 * 109.47159 * 300.30794 * 1 2 3 31 31 H 1.08998 * 109.47002 * 60.30907 * 1 2 3 32 32 H 0.96999 * 120.00047 * 0.02562 * 7 5 4 33 33 H 1.08994 * 109.47323 * 175.00268 * 10 8 7 34 34 H 1.09001 * 109.46928 * 295.00483 * 10 8 7 35 35 H 0.97008 * 119.99625 * 0.02562 * 11 10 8 36 36 H 0.97004 * 119.99859 * 179.97438 * 15 14 12 37 37 H 1.08992 * 109.47302 * 180.02562 * 20 8 7 38 38 H 1.08992 * 109.47451 * 300.00256 * 21 20 8 39 39 H 1.09006 * 109.46646 * 60.00326 * 21 20 8 40 40 H 1.09002 * 109.47312 * 300.00539 * 22 21 20 41 41 H 1.08995 * 109.47336 * 179.97438 * 22 21 20 42 42 H 1.09007 * 109.47175 * 180.02562 * 23 22 21 43 43 H 1.09002 * 109.47129 * 59.99969 * 23 22 21 44 44 H 1.09002 * 109.47159 * 300.00140 * 24 23 22 45 45 H 1.08999 * 109.47674 * 180.02562 * 24 23 22 46 46 H 1.08997 * 109.47344 * 299.99247 * 25 20 8 47 47 H 1.09002 * 109.47129 * 59.99778 * 25 20 8 48 48 H 1.09002 * 109.47167 * 89.99981 * 27 26 4 49 49 H 1.08995 * 109.47029 * 209.99745 * 27 26 4 50 50 H 1.08996 * 109.47171 * 329.99731 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2593 1.0595 0.0000 4 6 3.5612 0.6639 -0.0044 5 6 4.7439 1.5439 -0.0097 6 8 5.8604 1.0619 -0.0077 7 7 4.5878 2.8826 -0.0168 8 6 5.7631 3.7571 -0.0215 9 1 6.5572 3.3018 0.5703 10 6 5.3919 5.1136 0.5810 11 7 4.8168 4.9151 1.9137 12 6 4.4070 5.9943 2.6503 13 1 4.5082 6.9918 2.2489 14 6 3.8626 5.8062 3.9133 15 7 3.4683 6.8435 4.6210 16 14 3.6884 4.0809 4.6078 17 1 4.9194 3.7223 5.3570 18 1 2.5199 4.0313 5.5229 19 1 3.4875 3.1175 3.4957 20 6 6.2472 3.9531 -1.4595 21 6 5.1326 4.5922 -2.2903 22 6 5.6169 4.7888 -3.7282 23 6 5.9885 3.4326 -4.3311 24 6 7.1031 2.7934 -3.5004 25 6 6.6184 2.5966 -2.0620 26 6 3.5660 -0.6970 0.0028 27 6 4.7802 -1.5896 0.0070 28 8 2.2831 -1.0929 0.0055 29 1 -0.3633 -1.0277 0.0055 30 1 -0.3633 0.5186 0.8872 31 1 -0.3633 0.5090 -0.8927 32 1 3.6973 3.2670 -0.0181 33 1 6.2853 5.7330 0.6594 34 1 4.6619 5.6082 -0.0597 35 1 4.7264 4.0191 2.2744 36 1 3.0875 6.7120 5.5035 37 1 7.1219 4.6034 -1.4630 38 1 4.2581 3.9416 -2.2868 39 1 4.8681 5.5587 -1.8610 40 1 6.4913 5.4397 -3.7314 41 1 4.8227 5.2437 -4.3201 42 1 6.3340 3.5726 -5.3554 43 1 5.1141 2.7817 -4.3279 44 1 7.9775 3.4442 -3.5036 45 1 7.3682 1.8273 -3.9301 46 1 7.4125 2.1412 -1.4703 47 1 5.7439 1.9459 -2.0585 48 1 5.0734 -1.7994 1.0356 49 1 4.5455 -2.5246 -0.5017 50 1 5.5998 -1.0905 -0.5099 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271353535.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:43 Heat of formation + Delta-G solvation = -25.516509 kcal Electronic energy + Delta-G solvation = -30755.545454 eV Core-core repulsion = 26783.818335 eV Total energy + Delta-G solvation = -3971.727118 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.50967 -40.15638 -38.05600 -35.84424 -34.97702 -33.66221 -33.14352 -31.54405 -30.84953 -30.61008 -30.20676 -27.57876 -26.23548 -24.02854 -23.26579 -22.65618 -21.70738 -21.50801 -20.44107 -20.16130 -19.29217 -18.05817 -17.43263 -17.13858 -16.01705 -15.83652 -15.49752 -14.78146 -14.47474 -14.35280 -14.28390 -14.11204 -13.94201 -13.72898 -13.61499 -13.56560 -13.20970 -12.91445 -12.89651 -12.75228 -12.48593 -12.46977 -12.31698 -11.98016 -11.89251 -11.32518 -11.14152 -11.05963 -10.99873 -10.84172 -10.82791 -10.75971 -10.38507 -10.18357 -10.16459 -9.84121 -9.70709 -9.58941 -8.91000 -8.87681 -8.60830 -7.23031 -5.76540 -3.11852 1.04354 1.98760 2.36694 3.29338 3.39320 3.43331 3.44709 3.46477 3.83053 4.50103 4.60585 4.70215 4.78900 4.81640 4.85356 4.88889 5.15454 5.17364 5.21195 5.24509 5.28509 5.33090 5.37403 5.47867 5.51315 5.54471 5.60677 5.63873 5.72935 5.75926 5.76349 5.78340 5.88104 5.90050 6.00721 6.07868 6.10783 6.18132 6.27050 6.29923 6.39040 6.43402 6.49411 6.60713 6.66725 6.86111 7.39224 7.81630 7.98971 8.37733 8.42496 9.21334 9.94002 10.13341 11.41736 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007114 B = 0.005612 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3934.743917 B = 4987.806086 C = 7608.680067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.189 3.811 3 N -0.453 5.453 4 C -0.070 4.070 5 C 0.602 3.398 6 O -0.538 6.538 7 N -0.691 5.691 8 C 0.138 3.862 9 H 0.089 0.911 10 C 0.147 3.853 11 N -0.754 5.754 12 C -0.243 4.243 13 H 0.091 0.909 14 C 0.008 3.992 15 N -0.933 5.933 16 Si 0.881 3.119 17 H -0.285 1.285 18 H -0.291 1.291 19 H -0.277 1.277 20 C -0.092 4.092 21 C -0.117 4.117 22 C -0.117 4.117 23 C -0.118 4.118 24 C -0.119 4.119 25 C -0.105 4.105 26 C 0.032 3.968 27 C -0.073 4.073 28 O -0.200 6.200 29 H 0.087 0.913 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.412 0.588 33 H 0.042 0.958 34 H 0.038 0.962 35 H 0.362 0.638 36 H 0.259 0.741 37 H 0.079 0.921 38 H 0.061 0.939 39 H 0.071 0.929 40 H 0.060 0.940 41 H 0.057 0.943 42 H 0.054 0.946 43 H 0.056 0.944 44 H 0.058 0.942 45 H 0.055 0.945 46 H 0.068 0.932 47 H 0.059 0.941 48 H 0.090 0.910 49 H 0.077 0.923 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.259 -15.787 -17.224 23.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.020 4.020 3 N -0.183 5.183 4 C -0.190 4.190 5 C 0.387 3.613 6 O -0.417 6.417 7 N -0.341 5.341 8 C 0.033 3.967 9 H 0.107 0.893 10 C 0.020 3.980 11 N -0.400 5.400 12 C -0.373 4.373 13 H 0.109 0.891 14 C -0.188 4.188 15 N -0.581 5.581 16 Si 0.711 3.289 17 H -0.212 1.212 18 H -0.218 1.218 19 H -0.203 1.203 20 C -0.112 4.112 21 C -0.155 4.155 22 C -0.154 4.154 23 C -0.156 4.156 24 C -0.157 4.157 25 C -0.142 4.142 26 C -0.025 4.025 27 C -0.130 4.130 28 O -0.088 6.088 29 H 0.106 0.894 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.248 0.752 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.195 0.805 36 H 0.069 0.931 37 H 0.098 0.902 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.073 0.927 46 H 0.087 0.913 47 H 0.078 0.922 48 H 0.108 0.892 49 H 0.095 0.905 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 0.255 -15.241 -17.143 22.940 hybrid contribution -0.544 -1.614 0.758 1.864 sum -0.289 -16.855 -16.385 23.508 Atomic orbital electron populations 1.20290 0.80902 1.04667 1.05453 1.26218 0.96491 0.78242 1.01056 1.70772 1.00778 1.29834 1.16929 1.21606 0.92336 0.92291 1.12777 1.16619 0.86014 0.82145 0.76494 1.90752 1.23969 1.75337 1.51640 1.45802 1.11145 1.04837 1.72352 1.21444 0.87981 0.91319 0.95930 0.89263 1.21018 0.97432 0.92493 0.87068 1.42701 1.75935 1.05913 1.15477 1.19033 1.33385 0.87968 0.96883 0.89109 1.24623 1.00895 0.96374 0.96891 1.69697 1.47757 1.28186 1.12458 0.86601 0.77483 0.85884 0.78928 1.21165 1.21759 1.20345 1.21513 0.98533 0.97377 0.93785 1.21651 0.98111 1.01209 0.94520 1.21513 1.00748 0.96842 0.96326 1.21528 0.98709 0.96970 0.98350 1.21573 0.97999 0.99995 0.96112 1.21629 1.01516 0.96407 0.94681 1.23683 0.83818 0.94573 1.00389 1.20564 0.90303 0.97466 1.04626 1.84303 1.16415 1.38057 1.70010 0.89396 0.88192 0.88318 0.75162 0.93986 0.94438 0.80454 0.93087 0.90232 0.92066 0.91068 0.92103 0.92404 0.92695 0.92510 0.92294 0.92665 0.91283 0.92224 0.89161 0.90451 0.86858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.42 10.51 36.01 0.38 -0.05 16 2 C 0.19 2.39 8.30 -13.08 -0.11 2.28 16 3 N -0.45 -7.09 11.06 -7.65 -0.08 -7.17 16 4 C -0.07 -1.11 6.99 -83.02 -0.58 -1.69 16 5 C 0.60 10.04 6.17 -12.52 -0.08 9.96 16 6 O -0.54 -9.18 11.92 5.27 0.06 -9.12 16 7 N -0.69 -11.44 3.64 -54.89 -0.20 -11.64 16 8 C 0.14 2.22 2.16 -67.94 -0.15 2.07 16 9 H 0.09 1.56 7.58 -51.93 -0.39 1.17 16 10 C 0.15 2.78 5.60 -4.05 -0.02 2.75 16 11 N -0.75 -17.99 5.24 -59.92 -0.31 -18.30 16 12 C -0.24 -6.89 10.47 -15.06 -0.16 -7.05 16 13 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 14 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 15 N -0.93 -29.54 13.97 55.49 0.78 -28.77 16 16 Si 0.88 22.96 27.73 -169.99 -4.71 18.25 16 17 H -0.28 -7.44 7.11 56.52 0.40 -7.04 16 18 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 19 H -0.28 -7.03 6.52 56.52 0.37 -6.66 16 20 C -0.09 -1.22 2.07 -90.61 -0.19 -1.41 16 21 C -0.12 -1.47 4.70 -26.73 -0.13 -1.60 16 22 C -0.12 -1.26 5.92 -26.73 -0.16 -1.42 16 23 C -0.12 -1.23 5.92 -26.73 -0.16 -1.39 16 24 C -0.12 -1.31 5.92 -26.70 -0.16 -1.47 16 25 C -0.10 -1.37 3.73 -26.70 -0.10 -1.47 16 26 C 0.03 0.43 7.44 -35.08 -0.26 0.17 16 27 C -0.07 -0.76 9.88 36.00 0.36 -0.40 16 28 O -0.20 -2.57 10.73 6.53 0.07 -2.50 16 29 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.41 7.12 8.33 -40.82 -0.34 6.78 16 33 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.04 0.70 6.17 -51.93 -0.32 0.38 16 35 H 0.36 8.80 5.20 -40.82 -0.21 8.59 16 36 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 37 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 38 H 0.06 0.82 7.60 -51.93 -0.39 0.43 16 39 H 0.07 0.93 6.32 -51.93 -0.33 0.60 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.07 0.98 7.53 -51.93 -0.39 0.59 16 47 H 0.06 0.87 5.77 -51.93 -0.30 0.57 16 48 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 49 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 50 H 0.11 1.26 6.48 -51.93 -0.34 0.92 16 LS Contribution 389.51 15.07 5.87 5.87 Total: -1.00 -33.67 389.51 -8.24 -41.91 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: -8.10 Total: 12.04 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: -1.60 Total: -0.56 kcal Atomic # 7 Polarization: -66.06 SS G_CDS: 0.18 Total: -65.88 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.13 Total: -11.62 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -4.71 Total: 18.25 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.67 -8.24 -41.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271353535.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.396 kcal (2) G-P(sol) polarization free energy of solvation -33.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds