Wall clock time and date at job start Tue Mar 31 2020 19:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29933 * 125.37374 * 2 1 4 4 C 1.36069 * 108.47139 * 180.19705 * 3 2 1 5 5 C 1.47426 * 126.44720 * 179.82133 * 4 3 2 6 6 O 1.21610 * 119.99771 * 179.69157 * 5 4 3 7 7 N 1.34777 * 119.99972 * 359.68838 * 5 4 3 8 8 C 1.46496 * 120.00258 * 179.97438 * 7 5 4 9 9 H 1.09002 * 109.47135 * 325.00366 * 8 7 5 10 10 C 1.52995 * 109.47630 * 205.00405 * 8 7 5 11 11 N 1.46499 * 109.47232 * 54.99842 * 10 8 7 12 12 C 1.36935 * 120.00152 * 180.02562 * 11 10 8 13 13 H 1.07997 * 119.99846 * 359.97438 * 12 11 10 14 14 C 1.38812 * 119.99978 * 180.02562 * 12 11 10 15 15 N 1.31617 * 119.99940 * 180.02562 * 14 12 11 16 16 Si 1.86802 * 120.00047 * 359.97438 * 14 12 11 17 17 H 1.48507 * 109.46866 * 89.99915 * 16 14 12 18 18 H 1.48499 * 109.47417 * 209.99938 * 16 14 12 19 19 H 1.48501 * 109.47303 * 330.00213 * 16 14 12 20 20 C 1.53000 * 109.47129 * 85.00009 * 8 7 5 21 21 C 1.53008 * 109.46851 * 60.00021 * 20 8 7 22 22 C 1.52999 * 109.47170 * 179.97438 * 21 20 8 23 23 C 1.53003 * 109.46786 * 60.00458 * 22 21 20 24 24 C 1.52999 * 109.47299 * 299.99811 * 23 22 21 25 25 C 1.53003 * 109.47112 * 300.00475 * 20 8 7 26 26 C 1.36090 * 107.10537 * 359.56219 * 4 3 2 27 27 C 1.50697 * 126.52628 * 180.26212 * 26 4 3 28 28 O 1.34042 * 125.37944 * 179.71114 * 2 1 3 29 29 H 1.09002 * 109.46717 * 180.30468 * 1 2 3 30 30 H 1.08995 * 109.47159 * 300.30794 * 1 2 3 31 31 H 1.08998 * 109.47002 * 60.30907 * 1 2 3 32 32 H 0.96999 * 120.00047 * 0.02562 * 7 5 4 33 33 H 1.08994 * 109.47323 * 175.00268 * 10 8 7 34 34 H 1.09001 * 109.46928 * 295.00483 * 10 8 7 35 35 H 0.97008 * 119.99625 * 0.02562 * 11 10 8 36 36 H 0.97004 * 119.99859 * 179.97438 * 15 14 12 37 37 H 1.08992 * 109.47302 * 180.02562 * 20 8 7 38 38 H 1.08992 * 109.47451 * 300.00256 * 21 20 8 39 39 H 1.09006 * 109.46646 * 60.00326 * 21 20 8 40 40 H 1.09002 * 109.47312 * 300.00539 * 22 21 20 41 41 H 1.08995 * 109.47336 * 179.97438 * 22 21 20 42 42 H 1.09007 * 109.47175 * 180.02562 * 23 22 21 43 43 H 1.09002 * 109.47129 * 59.99969 * 23 22 21 44 44 H 1.09002 * 109.47159 * 300.00140 * 24 23 22 45 45 H 1.08999 * 109.47674 * 180.02562 * 24 23 22 46 46 H 1.08997 * 109.47344 * 299.99247 * 25 20 8 47 47 H 1.09002 * 109.47129 * 59.99778 * 25 20 8 48 48 H 1.09002 * 109.47167 * 89.99981 * 27 26 4 49 49 H 1.08995 * 109.47029 * 209.99745 * 27 26 4 50 50 H 1.08996 * 109.47171 * 329.99731 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2593 1.0595 0.0000 4 6 3.5612 0.6639 -0.0044 5 6 4.7439 1.5439 -0.0097 6 8 5.8604 1.0619 -0.0077 7 7 4.5878 2.8826 -0.0168 8 6 5.7631 3.7571 -0.0215 9 1 6.5572 3.3018 0.5703 10 6 5.3919 5.1136 0.5810 11 7 4.8168 4.9151 1.9137 12 6 4.4070 5.9943 2.6503 13 1 4.5082 6.9918 2.2489 14 6 3.8626 5.8062 3.9133 15 7 3.4683 6.8435 4.6210 16 14 3.6884 4.0809 4.6078 17 1 4.9194 3.7223 5.3570 18 1 2.5199 4.0313 5.5229 19 1 3.4875 3.1175 3.4957 20 6 6.2472 3.9531 -1.4595 21 6 5.1326 4.5922 -2.2903 22 6 5.6169 4.7888 -3.7282 23 6 5.9885 3.4326 -4.3311 24 6 7.1031 2.7934 -3.5004 25 6 6.6184 2.5966 -2.0620 26 6 3.5660 -0.6970 0.0028 27 6 4.7802 -1.5896 0.0070 28 8 2.2831 -1.0929 0.0055 29 1 -0.3633 -1.0277 0.0055 30 1 -0.3633 0.5186 0.8872 31 1 -0.3633 0.5090 -0.8927 32 1 3.6973 3.2670 -0.0181 33 1 6.2853 5.7330 0.6594 34 1 4.6619 5.6082 -0.0597 35 1 4.7264 4.0191 2.2744 36 1 3.0875 6.7120 5.5035 37 1 7.1219 4.6034 -1.4630 38 1 4.2581 3.9416 -2.2868 39 1 4.8681 5.5587 -1.8610 40 1 6.4913 5.4397 -3.7314 41 1 4.8227 5.2437 -4.3201 42 1 6.3340 3.5726 -5.3554 43 1 5.1141 2.7817 -4.3279 44 1 7.9775 3.4442 -3.5036 45 1 7.3682 1.8273 -3.9301 46 1 7.4125 2.1412 -1.4703 47 1 5.7439 1.9459 -2.0585 48 1 5.0734 -1.7994 1.0356 49 1 4.5455 -2.5246 -0.5017 50 1 5.5998 -1.0905 -0.5099 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271353535.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:42 Heat of formation + Delta-G solvation = -49.104304 kcal Electronic energy + Delta-G solvation = -30756.568297 eV Core-core repulsion = 26783.818335 eV Total energy + Delta-G solvation = -3972.749962 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.52219 -41.38895 -39.17260 -37.33714 -36.03565 -35.38536 -34.06839 -33.34094 -32.25668 -31.60169 -30.96162 -29.04439 -27.33520 -25.53942 -24.40978 -23.89378 -22.94734 -22.74076 -21.60045 -21.30812 -20.39911 -19.81766 -18.91714 -18.15105 -17.29074 -16.98078 -16.77887 -16.32552 -15.92967 -15.74238 -15.34480 -15.19165 -15.01129 -14.93404 -14.73254 -14.63658 -14.43977 -14.28958 -13.93247 -13.72588 -13.60909 -13.53357 -13.50517 -13.22333 -13.00975 -12.90412 -12.63273 -12.37947 -12.33304 -12.08531 -12.00702 -11.92834 -11.86613 -11.83209 -11.37824 -11.26746 -11.05316 -11.02964 -10.74210 -10.04127 -9.75541 -9.32869 -8.06636 -5.38563 -0.00904 0.92821 1.30850 1.31237 1.38252 1.42580 2.08046 2.22081 2.41525 2.88839 3.25908 3.42266 3.55068 3.67638 3.76825 3.84242 3.95236 4.09428 4.11698 4.24651 4.31454 4.45226 4.47382 4.50507 4.53429 4.61133 4.62370 4.65453 4.68525 4.71636 4.76182 4.79612 4.84996 4.88470 5.01030 5.08691 5.11202 5.19245 5.22851 5.24395 5.31423 5.32980 5.39642 5.48681 5.55888 5.64011 5.73297 6.17407 6.29703 6.57402 7.03022 7.09489 7.79189 7.96900 9.14889 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007114 B = 0.005612 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3934.743917 B = 4987.806086 C = 7608.680067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.194 3.806 3 N -0.491 5.491 4 C -0.107 4.107 5 C 0.600 3.400 6 O -0.548 6.548 7 N -0.694 5.694 8 C 0.148 3.852 9 H 0.075 0.925 10 C 0.147 3.853 11 N -0.757 5.757 12 C -0.227 4.227 13 H 0.066 0.934 14 C -0.053 4.053 15 N -0.978 5.978 16 Si 0.945 3.055 17 H -0.283 1.283 18 H -0.292 1.292 19 H -0.269 1.269 20 C -0.085 4.085 21 C -0.114 4.114 22 C -0.113 4.113 23 C -0.115 4.115 24 C -0.115 4.115 25 C -0.096 4.096 26 C 0.038 3.962 27 C -0.071 4.071 28 O -0.197 6.197 29 H 0.115 0.885 30 H 0.104 0.896 31 H 0.114 0.886 32 H 0.408 0.592 33 H 0.047 0.953 34 H 0.045 0.955 35 H 0.361 0.639 36 H 0.258 0.742 37 H 0.091 0.909 38 H 0.049 0.951 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.073 0.927 43 H 0.047 0.953 44 H 0.068 0.932 45 H 0.062 0.938 46 H 0.055 0.945 47 H 0.042 0.958 48 H 0.098 0.902 49 H 0.107 0.893 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.335 -17.849 -18.902 25.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.015 4.015 3 N -0.221 5.221 4 C -0.226 4.226 5 C 0.386 3.614 6 O -0.428 6.428 7 N -0.343 5.343 8 C 0.043 3.957 9 H 0.093 0.907 10 C 0.021 3.979 11 N -0.402 5.402 12 C -0.358 4.358 13 H 0.084 0.916 14 C -0.245 4.245 15 N -0.629 5.629 16 Si 0.774 3.226 17 H -0.209 1.209 18 H -0.218 1.218 19 H -0.194 1.194 20 C -0.105 4.105 21 C -0.151 4.151 22 C -0.151 4.151 23 C -0.152 4.152 24 C -0.153 4.153 25 C -0.134 4.134 26 C -0.018 4.018 27 C -0.127 4.127 28 O -0.085 6.085 29 H 0.134 0.866 30 H 0.122 0.878 31 H 0.132 0.868 32 H 0.243 0.757 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.194 0.806 36 H 0.067 0.933 37 H 0.109 0.891 38 H 0.068 0.932 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.066 0.934 44 H 0.087 0.913 45 H 0.080 0.920 46 H 0.074 0.926 47 H 0.061 0.939 48 H 0.117 0.883 49 H 0.125 0.875 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.205 -17.317 -18.867 25.610 hybrid contribution -0.535 -0.957 1.206 1.630 sum -0.330 -18.274 -17.661 25.416 Atomic orbital electron populations 1.20599 0.77529 1.06828 1.06304 1.27227 0.98012 0.77539 0.98699 1.70742 1.01053 1.31387 1.18904 1.21620 0.92355 0.93214 1.15378 1.16785 0.86397 0.82116 0.76082 1.90732 1.24429 1.75456 1.52187 1.45787 1.10789 1.05046 1.72711 1.21304 0.87477 0.89468 0.97410 0.90672 1.21179 0.97345 0.94486 0.84917 1.42720 1.75970 1.04613 1.16929 1.19049 1.31633 0.88183 0.96903 0.91584 1.25294 1.01758 0.99891 0.97605 1.69845 1.49720 1.30361 1.12968 0.85557 0.77212 0.81590 0.78198 1.20938 1.21831 1.19447 1.21470 0.99089 0.98015 0.91900 1.21595 0.97384 1.00307 0.95824 1.21500 1.01361 0.97360 0.94872 1.21508 0.98159 0.96381 0.99196 1.21550 0.98470 1.00765 0.94500 1.21500 1.00316 0.95519 0.96057 1.24189 0.84825 0.94294 0.98527 1.20671 0.88645 0.98027 1.05359 1.84341 1.16141 1.38062 1.69939 0.86596 0.87769 0.86786 0.75699 0.93467 0.93682 0.80577 0.93307 0.89120 0.93236 0.91773 0.91198 0.91552 0.90845 0.93378 0.91293 0.91960 0.92640 0.93903 0.88324 0.87474 0.87840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.71 10.51 71.24 0.75 0.04 16 2 C 0.19 4.65 8.30 88.39 0.73 5.38 16 3 N -0.49 -15.18 11.06 -293.04 -3.24 -18.42 16 4 C -0.11 -3.38 6.99 40.41 0.28 -3.10 16 5 C 0.60 20.14 6.17 86.66 0.53 20.67 16 6 O -0.55 -18.80 11.92 -4.06 -0.05 -18.85 16 7 N -0.69 -23.16 3.64 -445.81 -1.62 -24.79 16 8 C 0.15 4.76 2.16 44.99 0.10 4.85 16 9 H 0.08 2.65 7.58 -2.39 -0.02 2.63 16 10 C 0.15 5.52 5.60 86.38 0.48 6.00 16 11 N -0.76 -36.17 5.24 -343.47 -1.80 -37.96 16 12 C -0.23 -13.04 10.47 84.03 0.88 -12.15 16 13 H 0.07 4.08 8.06 -2.91 -0.02 4.05 16 14 C -0.05 -3.21 5.50 84.86 0.47 -2.75 16 15 N -0.98 -63.17 13.97 21.65 0.30 -62.87 16 16 Si 0.95 48.09 27.73 68.60 1.90 50.00 16 17 H -0.28 -14.20 7.11 99.48 0.71 -13.49 16 18 H -0.29 -14.78 7.11 99.48 0.71 -14.08 16 19 H -0.27 -13.13 6.52 99.48 0.65 -12.48 16 20 C -0.08 -2.19 2.07 -10.79 -0.02 -2.21 16 21 C -0.11 -2.75 4.70 30.60 0.14 -2.60 16 22 C -0.11 -2.21 5.92 30.59 0.18 -2.03 16 23 C -0.11 -2.15 5.92 30.60 0.18 -1.97 16 24 C -0.12 -2.31 5.92 30.61 0.18 -2.12 16 25 C -0.10 -2.44 3.73 30.61 0.11 -2.33 16 26 C 0.04 1.01 7.44 25.18 0.19 1.19 16 27 C -0.07 -1.35 9.88 71.23 0.70 -0.65 16 28 O -0.20 -4.72 10.73 0.47 0.01 -4.71 16 29 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.10 1.30 8.14 -2.39 -0.02 1.29 16 31 H 0.11 1.14 8.14 -2.39 -0.02 1.13 16 32 H 0.41 14.32 8.33 -92.71 -0.77 13.55 16 33 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.05 1.67 6.17 -2.39 -0.01 1.65 16 35 H 0.36 17.44 5.20 -92.70 -0.48 16.96 16 36 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 37 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.05 1.31 7.60 -2.39 -0.02 1.30 16 39 H 0.06 1.63 6.32 -2.38 -0.02 1.62 16 40 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 43 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 46 H 0.05 1.55 7.53 -2.39 -0.02 1.53 16 47 H 0.04 1.23 5.77 -2.39 -0.01 1.22 16 48 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 49 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 50 H 0.10 2.22 6.48 -2.39 -0.02 2.20 16 Total: -1.00 -73.55 389.51 1.05 -72.50 By element: Atomic # 1 Polarization: 39.22 SS G_CDS: -0.35 Total: 38.87 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: 5.90 Total: 6.23 kcal Atomic # 7 Polarization: -137.68 SS G_CDS: -6.36 Total: -144.04 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.04 Total: -23.56 kcal Atomic # 14 Polarization: 48.09 SS G_CDS: 1.90 Total: 50.00 kcal Total: -73.55 1.05 -72.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271353535.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.395 kcal (2) G-P(sol) polarization free energy of solvation -73.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds