Wall clock time and date at job start Tue Mar 31 2020 19:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47021 * 130.25800 * 3 2 1 5 5 C 1.52996 * 109.46972 * 179.97438 * 4 3 2 6 6 C 1.50708 * 109.46729 * 180.02562 * 5 4 3 7 7 O 1.21275 * 119.99870 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99487 * 179.97438 * 6 5 4 9 9 C 1.46500 * 119.99750 * 179.97438 * 8 6 5 10 10 H 1.09004 * 110.28790 * 34.29920 * 9 8 6 11 11 C 1.54382 * 110.32498 * 272.17769 * 9 8 6 12 12 N 1.48724 * 104.51663 * 217.32136 * 11 9 8 13 13 C 1.46899 * 111.01347 * 158.96262 * 12 11 9 14 14 C 1.50703 * 109.47027 * 74.49446 * 13 12 11 15 15 O 1.21287 * 120.00070 * 359.97438 * 14 13 12 16 16 N 1.34776 * 120.00003 * 179.97438 * 14 13 12 17 17 C 1.37100 * 119.99897 * 179.97438 * 16 14 13 18 18 H 1.07995 * 119.99853 * 0.02562 * 17 16 14 19 19 C 1.38952 * 119.99437 * 179.97438 * 17 16 14 20 20 N 1.31416 * 119.99398 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 120.00549 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.46869 * 90.00211 * 21 19 17 23 23 H 1.48500 * 109.47240 * 210.00077 * 21 19 17 24 24 H 1.48499 * 109.47139 * 330.00219 * 21 19 17 25 25 C 1.48564 * 104.28605 * 39.36046 * 12 11 9 26 26 C 1.54256 * 110.32496 * 156.42953 * 9 8 6 27 27 C 1.52997 * 110.32342 * 237.79185 * 26 9 8 28 28 C 1.52999 * 110.32240 * 359.97438 * 26 9 8 29 29 H 4.44651 * 5.63304 * 180.02562 * 4 1 2 30 30 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 31 31 H 1.09000 * 109.47090 * 10.26048 * 3 2 1 32 32 H 1.08996 * 109.47407 * 300.00412 * 4 3 2 33 33 H 1.09004 * 109.46733 * 59.99729 * 4 3 2 34 34 H 1.09000 * 109.47380 * 299.99696 * 5 4 3 35 35 H 1.08996 * 109.47134 * 60.00785 * 5 4 3 36 36 H 0.96996 * 120.00263 * 0.02562 * 8 6 5 37 37 H 1.09000 * 110.40867 * 336.02496 * 11 9 8 38 38 H 1.08994 * 110.41401 * 98.47052 * 11 9 8 39 39 H 1.09000 * 109.47064 * 194.49067 * 13 12 11 40 40 H 1.08996 * 109.47617 * 314.49222 * 13 12 11 41 41 H 0.96999 * 119.99681 * 359.97438 * 16 14 13 42 42 H 0.96997 * 119.99551 * 180.02562 * 20 19 17 43 43 H 1.09001 * 110.40958 * 201.79303 * 25 12 11 44 44 H 1.08996 * 110.51178 * 79.40370 * 25 12 11 45 45 H 1.09003 * 109.47449 * 60.00262 * 27 26 9 46 46 H 1.09000 * 109.47162 * 179.97438 * 27 26 9 47 47 H 1.09000 * 109.47707 * 299.99829 * 27 26 9 48 48 H 1.08993 * 109.47200 * 60.00542 * 28 26 9 49 49 H 1.09006 * 109.46673 * 180.02562 * 28 26 9 50 50 H 1.08997 * 109.47472 * 299.99949 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1555 0.9331 -1.1009 5 6 4.6855 0.9343 -1.1004 6 6 5.1874 1.8532 -2.1844 7 8 4.3990 2.4488 -2.8875 8 7 6.5124 2.0138 -2.3715 9 6 7.0003 2.9067 -3.4256 10 1 6.3291 3.7577 -3.5407 11 6 7.1289 2.1410 -4.7600 12 7 8.3537 2.6984 -5.3931 13 6 8.8968 1.7719 -6.3954 14 6 8.0325 1.8040 -7.6296 15 8 7.0596 2.5271 -7.6699 16 7 8.3407 1.0292 -8.6884 17 6 7.5540 1.0580 -9.8109 18 1 6.6878 1.7019 -9.8468 19 6 7.8721 0.2595 -10.9027 20 7 7.1184 0.2875 -11.9789 21 14 9.3717 -0.8526 -10.8414 22 1 8.9823 -2.1793 -10.2997 23 1 9.9210 -1.0190 -12.2110 24 1 10.4041 -0.2436 -9.9647 25 6 9.3020 2.8761 -4.2633 26 6 8.4282 3.3907 -3.0993 27 6 8.4703 4.9189 -3.0386 28 6 8.9021 2.7922 -1.7734 29 1 -1.0502 -0.0001 0.0004 30 1 3.0092 0.3479 0.9672 31 1 3.0098 -1.0104 -0.1831 32 1 2.7923 0.5859 -2.0681 33 1 2.7917 1.9442 -0.9178 34 1 5.0484 1.2819 -0.1332 35 1 5.0497 -0.0767 -1.2833 36 1 7.1429 1.5377 -1.8089 37 1 7.2489 1.0734 -4.5756 38 1 6.2573 2.3235 -5.3885 39 1 9.9121 2.0718 -6.6550 40 1 8.9097 0.7614 -5.9871 41 1 9.1190 0.4512 -8.6562 42 1 7.3402 -0.2701 -12.7409 43 1 10.0651 3.6110 -4.5196 44 1 9.7645 1.9250 -3.9997 45 1 7.7897 5.2706 -2.2632 46 1 9.4841 5.2455 -2.8070 47 1 8.1671 5.3294 -4.0017 48 1 8.9031 1.7047 -1.8454 49 1 9.9110 3.1433 -1.5564 50 1 8.2299 3.1028 -0.9736 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276580218.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:55 Heat of formation + Delta-G solvation = -13.825458 kcal Electronic energy + Delta-G solvation = -28938.348696 eV Core-core repulsion = 24967.128540 eV Total energy + Delta-G solvation = -3971.220156 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.61488 -39.09045 -38.01906 -35.86712 -34.83736 -33.86168 -33.33705 -32.52995 -31.62229 -29.58011 -28.27933 -27.58316 -27.08745 -25.10408 -23.81834 -22.61858 -21.35180 -20.32544 -19.52811 -19.13439 -18.49058 -18.16595 -17.16314 -16.35940 -16.20050 -16.01021 -15.17694 -15.11399 -14.89142 -14.69377 -14.32578 -14.23135 -13.97686 -13.91414 -13.52968 -13.18233 -13.05248 -12.88250 -12.79035 -12.66908 -12.39643 -12.18952 -12.12704 -11.86467 -11.81183 -11.63493 -11.32819 -11.27447 -11.10472 -11.06047 -10.89241 -10.59934 -10.57546 -10.48257 -10.35999 -9.93789 -9.90224 -9.51823 -9.12540 -8.61107 -8.14821 -8.07797 -6.26883 -3.77990 2.53212 2.55999 2.59533 3.02437 3.04079 3.07988 3.16330 3.78816 4.00116 4.09513 4.13318 4.25498 4.48693 4.52362 4.67466 4.69342 4.76069 4.86597 5.08722 5.12254 5.13236 5.17519 5.23326 5.26687 5.27560 5.29420 5.39084 5.43976 5.51167 5.58436 5.65716 5.71005 5.76892 5.78723 5.82625 5.86088 5.93459 5.96171 6.01866 6.08128 6.20191 6.36134 6.41004 7.01827 7.08211 7.36993 7.37774 7.62585 8.15319 8.19239 8.64974 9.00175 9.46930 9.88941 10.86495 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009642 B = 0.002641 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2903.230318 B =10599.047265 C =12689.300386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.187 4.187 3 C -0.013 4.013 4 C -0.101 4.101 5 C -0.140 4.140 6 C 0.508 3.492 7 O -0.530 6.530 8 N -0.728 5.728 9 C 0.148 3.852 10 H 0.102 0.898 11 C 0.031 3.969 12 N -0.480 5.480 13 C 0.033 3.967 14 C 0.454 3.546 15 O -0.554 6.554 16 N -0.594 5.594 17 C -0.302 4.302 18 H 0.120 0.880 19 C 0.040 3.960 20 N -0.883 5.883 21 Si 0.879 3.121 22 H -0.272 1.272 23 H -0.277 1.277 24 H -0.270 1.270 25 C 0.037 3.963 26 C -0.074 4.074 27 C -0.134 4.134 28 C -0.144 4.144 29 H 0.216 0.784 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.399 0.601 37 H 0.041 0.959 38 H 0.102 0.898 39 H 0.090 0.910 40 H 0.050 0.950 41 H 0.369 0.631 42 H 0.273 0.727 43 H 0.085 0.915 44 H 0.043 0.957 45 H 0.053 0.947 46 H 0.057 0.943 47 H 0.070 0.930 48 H 0.055 0.945 49 H 0.063 0.937 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.274 -0.731 28.553 28.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.187 4.187 3 C -0.049 4.049 4 C -0.139 4.139 5 C -0.180 4.180 6 C 0.294 3.706 7 O -0.405 6.405 8 N -0.383 5.383 9 C 0.043 3.957 10 H 0.120 0.880 11 C -0.098 4.098 12 N -0.204 5.204 13 C -0.099 4.099 14 C 0.239 3.761 15 O -0.435 6.435 16 N -0.234 5.234 17 C -0.431 4.431 18 H 0.137 0.863 19 C -0.163 4.163 20 N -0.523 5.523 21 Si 0.706 3.294 22 H -0.198 1.198 23 H -0.202 1.202 24 H -0.195 1.195 25 C -0.091 4.091 26 C -0.075 4.075 27 C -0.191 4.191 28 C -0.201 4.201 29 H 0.233 0.767 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.236 0.764 37 H 0.059 0.941 38 H 0.120 0.880 39 H 0.109 0.891 40 H 0.068 0.932 41 H 0.202 0.798 42 H 0.083 0.917 43 H 0.103 0.897 44 H 0.061 0.939 45 H 0.072 0.928 46 H 0.076 0.924 47 H 0.089 0.911 48 H 0.074 0.926 49 H 0.082 0.918 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.886 0.628 27.490 27.562 hybrid contribution 1.594 -2.138 0.379 2.693 sum 3.480 -1.509 27.870 28.126 Atomic orbital electron populations 1.24934 0.96042 1.00926 1.00817 1.23084 0.94589 1.00499 1.00534 1.18760 0.84950 1.01131 1.00088 1.21292 0.92856 1.00554 0.99211 1.21679 0.97589 1.00324 0.98447 1.20716 0.82360 0.82528 0.85020 1.90765 1.55135 1.47433 1.47195 1.46373 1.07131 1.47987 1.36779 1.21817 0.94728 0.93105 0.86071 0.88006 1.23589 0.95780 0.95998 0.94436 1.65111 1.03311 1.42985 1.09004 1.22089 0.99223 0.94890 0.93693 1.19610 0.87884 0.84197 0.84410 1.90573 1.29213 1.41721 1.81986 1.42203 1.26811 1.39527 1.14874 1.19430 1.09124 1.24473 0.90040 0.86287 1.25034 0.97926 0.97932 0.95382 1.69627 1.38216 1.39857 1.04615 0.86675 0.82826 0.81425 0.78464 1.19750 1.20206 1.19539 1.23301 0.95502 0.99967 0.90311 1.21515 0.94031 0.97105 0.94868 1.21818 1.01589 0.92900 1.02822 1.21875 1.01767 1.00110 0.96398 0.76690 0.89584 0.89485 0.90467 0.90661 0.88793 0.88686 0.76369 0.94118 0.87953 0.89132 0.93169 0.79847 0.91686 0.89713 0.93875 0.92754 0.92420 0.91105 0.92600 0.91753 0.91861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.86 19.25 29.55 0.57 -1.30 16 2 C -0.19 -1.77 13.34 -37.12 -0.50 -2.27 16 3 C -0.01 -0.09 5.70 -29.51 -0.17 -0.26 16 4 C -0.10 -0.88 4.46 -26.73 -0.12 -1.00 16 5 C -0.14 -0.98 5.70 -27.88 -0.16 -1.14 16 6 C 0.51 5.78 7.83 -10.98 -0.09 5.69 16 7 O -0.53 -8.75 15.66 5.56 0.09 -8.66 16 8 N -0.73 -7.08 4.55 -52.46 -0.24 -7.32 16 9 C 0.15 1.84 3.01 -66.55 -0.20 1.64 16 10 H 0.10 1.52 7.17 -51.93 -0.37 1.15 16 11 C 0.03 0.49 5.65 -2.09 -0.01 0.48 16 12 N -0.48 -7.66 4.98 -231.27 -1.15 -8.82 16 13 C 0.03 0.56 5.32 -4.97 -0.03 0.53 16 14 C 0.45 10.57 7.63 -10.98 -0.08 10.48 16 15 O -0.55 -15.34 14.80 5.55 0.08 -15.26 16 16 N -0.59 -14.43 5.09 -10.96 -0.06 -14.49 16 17 C -0.30 -8.71 10.16 -14.93 -0.15 -8.86 16 18 H 0.12 3.94 7.39 -52.49 -0.39 3.55 16 19 C 0.04 1.11 5.50 -17.46 -0.10 1.01 16 20 N -0.88 -26.25 13.96 55.50 0.77 -25.47 16 21 Si 0.88 19.62 27.74 -169.99 -4.71 14.91 16 22 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 24 H -0.27 -5.47 6.52 56.52 0.37 -5.10 16 25 C 0.04 0.42 5.55 -2.18 -0.01 0.41 16 26 C -0.07 -0.72 1.03 -153.13 -0.16 -0.88 16 27 C -0.13 -1.27 8.23 37.16 0.31 -0.97 16 28 C -0.14 -0.93 7.11 37.16 0.26 -0.67 16 29 H 0.22 1.21 7.80 -54.08 -0.42 0.79 16 30 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 33 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 34 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.40 2.63 5.85 -40.82 -0.24 2.39 16 37 H 0.04 0.62 7.67 -51.93 -0.40 0.22 16 38 H 0.10 2.11 7.24 -51.93 -0.38 1.74 16 39 H 0.09 1.33 8.08 -51.93 -0.42 0.91 16 40 H 0.05 0.75 7.77 -51.93 -0.40 0.34 16 41 H 0.37 7.84 5.76 -40.82 -0.24 7.60 16 42 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 43 H 0.08 0.90 7.86 -51.93 -0.41 0.50 16 44 H 0.04 0.43 7.69 -51.93 -0.40 0.03 16 45 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.06 0.31 6.94 -51.93 -0.36 -0.05 16 49 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 50 H 0.06 0.37 7.74 -51.93 -0.40 -0.03 16 LS Contribution 407.58 15.07 6.14 6.14 Total: -1.00 -36.95 407.58 -7.92 -44.87 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: -8.21 Total: 11.17 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: -0.63 Total: 2.93 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: -0.67 Total: -56.10 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: 0.17 Total: -23.92 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -4.71 Total: 14.91 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -36.95 -7.92 -44.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276580218.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.040 kcal (2) G-P(sol) polarization free energy of solvation -36.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds