Wall clock time and date at job start Tue Mar 31 2020 19:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47021 * 130.25800 * 3 2 1 5 5 C 1.52996 * 109.46972 * 179.97438 * 4 3 2 6 6 C 1.50708 * 109.46729 * 180.02562 * 5 4 3 7 7 O 1.21275 * 119.99870 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99487 * 179.97438 * 6 5 4 9 9 C 1.46500 * 119.99750 * 179.97438 * 8 6 5 10 10 H 1.09004 * 110.28790 * 34.29920 * 9 8 6 11 11 C 1.54382 * 110.32498 * 272.17769 * 9 8 6 12 12 N 1.48724 * 104.51663 * 217.32136 * 11 9 8 13 13 C 1.46899 * 111.01347 * 158.96262 * 12 11 9 14 14 C 1.50703 * 109.47027 * 74.49446 * 13 12 11 15 15 O 1.21287 * 120.00070 * 359.97438 * 14 13 12 16 16 N 1.34776 * 120.00003 * 179.97438 * 14 13 12 17 17 C 1.37100 * 119.99897 * 179.97438 * 16 14 13 18 18 H 1.07995 * 119.99853 * 0.02562 * 17 16 14 19 19 C 1.38952 * 119.99437 * 179.97438 * 17 16 14 20 20 N 1.31416 * 119.99398 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 120.00549 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.46869 * 90.00211 * 21 19 17 23 23 H 1.48500 * 109.47240 * 210.00077 * 21 19 17 24 24 H 1.48499 * 109.47139 * 330.00219 * 21 19 17 25 25 C 1.48564 * 104.28605 * 39.36046 * 12 11 9 26 26 C 1.54256 * 110.32496 * 156.42953 * 9 8 6 27 27 C 1.52997 * 110.32342 * 237.79185 * 26 9 8 28 28 C 1.52999 * 110.32240 * 359.97438 * 26 9 8 29 29 H 4.44651 * 5.63304 * 180.02562 * 4 1 2 30 30 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 31 31 H 1.09000 * 109.47090 * 10.26048 * 3 2 1 32 32 H 1.08996 * 109.47407 * 300.00412 * 4 3 2 33 33 H 1.09004 * 109.46733 * 59.99729 * 4 3 2 34 34 H 1.09000 * 109.47380 * 299.99696 * 5 4 3 35 35 H 1.08996 * 109.47134 * 60.00785 * 5 4 3 36 36 H 0.96996 * 120.00263 * 0.02562 * 8 6 5 37 37 H 1.09000 * 110.40867 * 336.02496 * 11 9 8 38 38 H 1.08994 * 110.41401 * 98.47052 * 11 9 8 39 39 H 1.09000 * 109.47064 * 194.49067 * 13 12 11 40 40 H 1.08996 * 109.47617 * 314.49222 * 13 12 11 41 41 H 0.96999 * 119.99681 * 359.97438 * 16 14 13 42 42 H 0.96997 * 119.99551 * 180.02562 * 20 19 17 43 43 H 1.09001 * 110.40958 * 201.79303 * 25 12 11 44 44 H 1.08996 * 110.51178 * 79.40370 * 25 12 11 45 45 H 1.09003 * 109.47449 * 60.00262 * 27 26 9 46 46 H 1.09000 * 109.47162 * 179.97438 * 27 26 9 47 47 H 1.09000 * 109.47707 * 299.99829 * 27 26 9 48 48 H 1.08993 * 109.47200 * 60.00542 * 28 26 9 49 49 H 1.09006 * 109.46673 * 180.02562 * 28 26 9 50 50 H 1.08997 * 109.47472 * 299.99949 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1555 0.9331 -1.1009 5 6 4.6855 0.9343 -1.1004 6 6 5.1874 1.8532 -2.1844 7 8 4.3990 2.4488 -2.8875 8 7 6.5124 2.0138 -2.3715 9 6 7.0003 2.9067 -3.4256 10 1 6.3291 3.7577 -3.5407 11 6 7.1289 2.1410 -4.7600 12 7 8.3537 2.6984 -5.3931 13 6 8.8968 1.7719 -6.3954 14 6 8.0325 1.8040 -7.6296 15 8 7.0596 2.5271 -7.6699 16 7 8.3407 1.0292 -8.6884 17 6 7.5540 1.0580 -9.8109 18 1 6.6878 1.7019 -9.8468 19 6 7.8721 0.2595 -10.9027 20 7 7.1184 0.2875 -11.9789 21 14 9.3717 -0.8526 -10.8414 22 1 8.9823 -2.1793 -10.2997 23 1 9.9210 -1.0190 -12.2110 24 1 10.4041 -0.2436 -9.9647 25 6 9.3020 2.8761 -4.2633 26 6 8.4282 3.3907 -3.0993 27 6 8.4703 4.9189 -3.0386 28 6 8.9021 2.7922 -1.7734 29 1 -1.0502 -0.0001 0.0004 30 1 3.0092 0.3479 0.9672 31 1 3.0098 -1.0104 -0.1831 32 1 2.7923 0.5859 -2.0681 33 1 2.7917 1.9442 -0.9178 34 1 5.0484 1.2819 -0.1332 35 1 5.0497 -0.0767 -1.2833 36 1 7.1429 1.5377 -1.8089 37 1 7.2489 1.0734 -4.5756 38 1 6.2573 2.3235 -5.3885 39 1 9.9121 2.0718 -6.6550 40 1 8.9097 0.7614 -5.9871 41 1 9.1190 0.4512 -8.6562 42 1 7.3402 -0.2701 -12.7409 43 1 10.0651 3.6110 -4.5196 44 1 9.7645 1.9250 -3.9997 45 1 7.7897 5.2706 -2.2632 46 1 9.4841 5.2455 -2.8070 47 1 8.1671 5.3294 -4.0017 48 1 8.9031 1.7047 -1.8454 49 1 9.9110 3.1433 -1.5564 50 1 8.2299 3.1028 -0.9736 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276580218.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:53 Heat of formation + Delta-G solvation = -43.240863 kcal Electronic energy + Delta-G solvation = -28939.624244 eV Core-core repulsion = 24967.128540 eV Total energy + Delta-G solvation = -3972.495704 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.61051 -40.40673 -39.54983 -36.54936 -36.21036 -35.65427 -34.31503 -33.75953 -33.21039 -30.67802 -29.24361 -28.44193 -27.92087 -26.66965 -25.10372 -23.54029 -22.43848 -21.30127 -21.21277 -20.42147 -19.89604 -19.13085 -18.06589 -17.65576 -17.36515 -16.93077 -16.77805 -16.39694 -16.13843 -15.71850 -15.45406 -15.30526 -15.02342 -14.97674 -14.67468 -14.56123 -14.21557 -14.08085 -14.02066 -13.71647 -13.46646 -13.30800 -13.06396 -13.03060 -12.79202 -12.60875 -12.48645 -12.43206 -12.35842 -11.99198 -11.94311 -11.83583 -11.74954 -11.56077 -11.48350 -11.18745 -10.97615 -10.86357 -10.43587 -10.26245 -10.10451 -9.37463 -8.42435 -6.03827 1.28132 1.34560 1.43791 1.66770 1.82850 1.91634 1.95479 2.17896 2.22260 2.68909 3.12900 3.26001 3.43676 3.52774 3.59759 3.79721 3.91415 4.08341 4.12189 4.15832 4.16301 4.28443 4.33371 4.37886 4.44059 4.52496 4.67383 4.69619 4.70380 4.79198 4.80107 4.81879 4.86292 5.01619 5.02983 5.08410 5.19354 5.20850 5.20905 5.32092 5.35686 5.44944 5.47370 5.51526 5.83441 5.91356 6.03482 6.58484 6.59333 6.71393 6.87566 7.33011 7.38534 7.97891 8.75779 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009642 B = 0.002641 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2903.230318 B =10599.047265 C =12689.300386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.217 4.217 3 C -0.008 4.008 4 C -0.099 4.099 5 C -0.127 4.127 6 C 0.498 3.502 7 O -0.595 6.595 8 N -0.709 5.709 9 C 0.155 3.845 10 H 0.063 0.937 11 C 0.036 3.964 12 N -0.512 5.512 13 C 0.046 3.954 14 C 0.448 3.552 15 O -0.611 6.611 16 N -0.592 5.592 17 C -0.329 4.329 18 H 0.049 0.951 19 C -0.019 4.019 20 N -0.937 5.937 21 Si 0.969 3.031 22 H -0.256 1.256 23 H -0.274 1.274 24 H -0.228 1.228 25 C 0.040 3.960 26 C -0.065 4.065 27 C -0.133 4.133 28 C -0.140 4.140 29 H 0.237 0.763 30 H 0.113 0.887 31 H 0.106 0.894 32 H 0.042 0.958 33 H 0.052 0.948 34 H 0.136 0.864 35 H 0.125 0.875 36 H 0.420 0.580 37 H 0.051 0.949 38 H 0.035 0.965 39 H 0.126 0.874 40 H 0.084 0.916 41 H 0.390 0.610 42 H 0.279 0.721 43 H 0.096 0.904 44 H 0.073 0.927 45 H 0.057 0.943 46 H 0.082 0.918 47 H 0.037 0.963 48 H 0.073 0.927 49 H 0.083 0.917 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.191 -3.289 32.630 33.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.217 4.217 3 C -0.044 4.044 4 C -0.137 4.137 5 C -0.166 4.166 6 C 0.287 3.713 7 O -0.475 6.475 8 N -0.364 5.364 9 C 0.048 3.952 10 H 0.081 0.919 11 C -0.093 4.093 12 N -0.237 5.237 13 C -0.085 4.085 14 C 0.235 3.765 15 O -0.495 6.495 16 N -0.234 5.234 17 C -0.458 4.458 18 H 0.067 0.933 19 C -0.217 4.217 20 N -0.578 5.578 21 Si 0.789 3.211 22 H -0.181 1.181 23 H -0.199 1.199 24 H -0.151 1.151 25 C -0.087 4.087 26 C -0.066 4.066 27 C -0.190 4.190 28 C -0.197 4.197 29 H 0.254 0.746 30 H 0.131 0.869 31 H 0.124 0.876 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.154 0.846 35 H 0.143 0.857 36 H 0.262 0.738 37 H 0.069 0.931 38 H 0.054 0.946 39 H 0.144 0.856 40 H 0.101 0.899 41 H 0.226 0.774 42 H 0.089 0.911 43 H 0.114 0.886 44 H 0.092 0.908 45 H 0.076 0.924 46 H 0.101 0.899 47 H 0.057 0.943 48 H 0.091 0.909 49 H 0.102 0.898 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.857 -1.943 31.632 32.425 hybrid contribution -0.118 -1.207 -0.939 1.534 sum 6.740 -3.150 30.692 31.581 Atomic orbital electron populations 1.25718 0.97190 1.00699 1.00580 1.23927 0.96016 1.00841 1.00873 1.18865 0.83498 1.01651 1.00405 1.21197 0.94479 0.99689 0.98320 1.21717 0.95843 1.00696 0.98382 1.21676 0.82285 0.82159 0.85190 1.90755 1.56795 1.50125 1.49797 1.46197 1.07150 1.47222 1.35875 1.21498 0.96270 0.91914 0.85495 0.91861 1.23348 0.93902 0.96994 0.95094 1.64960 1.04524 1.43144 1.11027 1.22015 0.98689 0.97237 0.90578 1.21037 0.87541 0.82087 0.85811 1.90562 1.31956 1.43712 1.83238 1.42008 1.27054 1.40486 1.13886 1.18972 1.08855 1.25016 0.92963 0.93294 1.26196 1.02315 0.99345 0.93835 1.69824 1.40977 1.41163 1.05803 0.85311 0.77694 0.78650 0.79494 1.18080 1.19900 1.15134 1.23452 0.94784 1.01861 0.88629 1.21516 0.91288 0.97121 0.96651 1.21811 1.03015 0.93000 1.01201 1.21880 1.02907 1.01000 0.93918 0.74613 0.86877 0.87559 0.93868 0.92893 0.84627 0.85671 0.73826 0.93128 0.94628 0.85596 0.89855 0.77426 0.91137 0.88564 0.90838 0.92439 0.89949 0.94335 0.90855 0.89818 0.90907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -4.00 19.25 74.32 1.43 -2.57 16 2 C -0.22 -4.05 13.34 31.13 0.42 -3.63 16 3 C -0.01 -0.10 5.70 28.79 0.16 0.07 16 4 C -0.10 -1.71 4.46 30.59 0.14 -1.57 16 5 C -0.13 -1.46 5.70 29.85 0.17 -1.29 16 6 C 0.50 11.30 7.83 87.66 0.69 11.99 16 7 O -0.59 -21.41 15.66 -3.01 -0.05 -21.46 16 8 N -0.71 -12.66 4.55 -438.29 -2.00 -14.65 16 9 C 0.15 3.89 3.01 45.89 0.14 4.03 16 10 H 0.06 2.09 7.17 -2.39 -0.02 2.07 16 11 C 0.04 1.20 5.65 86.42 0.49 1.69 16 12 N -0.51 -15.99 4.98 -885.59 -4.41 -20.39 16 13 C 0.05 1.46 5.32 85.56 0.46 1.92 16 14 C 0.45 21.40 7.63 87.66 0.67 22.07 16 15 O -0.61 -36.59 14.80 -3.05 -0.05 -36.64 16 16 N -0.59 -29.02 5.09 -306.99 -1.56 -30.58 16 17 C -0.33 -20.06 10.16 84.04 0.85 -19.21 16 18 H 0.05 3.59 7.39 -2.91 -0.02 3.57 16 19 C -0.02 -1.07 5.50 84.93 0.47 -0.61 16 20 N -0.94 -58.20 13.96 21.66 0.30 -57.90 16 21 Si 0.97 39.43 27.74 68.60 1.90 41.33 16 22 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 23 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 24 H -0.23 -7.71 6.52 99.48 0.65 -7.06 16 25 C 0.04 0.75 5.55 86.45 0.48 1.23 16 26 C -0.06 -1.09 1.03 -51.29 -0.05 -1.14 16 27 C -0.13 -2.34 8.23 71.98 0.59 -1.75 16 28 C -0.14 -1.08 7.11 71.98 0.51 -0.56 16 29 H 0.24 2.61 7.80 -4.41 -0.03 2.57 16 30 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.11 0.88 8.14 -2.39 -0.02 0.87 16 32 H 0.04 1.02 8.10 -2.39 -0.02 1.00 16 33 H 0.05 1.13 8.10 -2.39 -0.02 1.11 16 34 H 0.14 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.13 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.42 3.79 5.85 -92.71 -0.54 3.24 16 37 H 0.05 1.52 7.67 -2.39 -0.02 1.50 16 38 H 0.04 1.64 7.24 -2.39 -0.02 1.62 16 39 H 0.13 3.14 8.08 -2.39 -0.02 3.12 16 40 H 0.08 2.13 7.77 -2.39 -0.02 2.11 16 41 H 0.39 15.57 5.76 -92.71 -0.53 15.03 16 42 H 0.28 15.78 8.31 -92.71 -0.77 15.01 16 43 H 0.10 1.65 7.86 -2.39 -0.02 1.63 16 44 H 0.07 1.00 7.69 -2.39 -0.02 0.98 16 45 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 48 H 0.07 0.35 6.94 -2.39 -0.02 0.34 16 49 H 0.08 0.43 8.14 -2.38 -0.02 0.41 16 50 H 0.07 0.48 7.74 -2.39 -0.02 0.46 16 Total: -1.00 -96.19 407.58 1.56 -94.63 By element: Atomic # 1 Polarization: 35.19 SS G_CDS: -0.20 Total: 35.00 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: 7.61 Total: 10.66 kcal Atomic # 7 Polarization: -115.87 SS G_CDS: -7.66 Total: -123.53 kcal Atomic # 8 Polarization: -58.00 SS G_CDS: -0.09 Total: -58.10 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 1.90 Total: 41.33 kcal Total: -96.19 1.56 -94.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276580218.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.392 kcal (2) G-P(sol) polarization free energy of solvation -96.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds