Wall clock time and date at job start Tue Mar 31 2020 19:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.53005 * 109.47387 * 55.10469 * 3 2 1 5 5 C 1.52999 * 109.46991 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.46733 * 179.97438 * 5 4 3 7 7 O 1.21286 * 120.00243 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00163 * 180.02562 * 6 5 4 9 9 C 1.46499 * 120.00313 * 180.02562 * 8 6 5 10 10 H 1.09000 * 110.36947 * 327.17474 * 9 8 6 11 11 C 1.54375 * 110.32650 * 89.35886 * 9 8 6 12 12 N 1.48556 * 104.59628 * 142.74887 * 11 9 8 13 13 C 1.46893 * 111.00505 * 200.95934 * 12 11 9 14 14 C 1.50700 * 109.47144 * 290.12799 * 13 12 11 15 15 O 1.21288 * 120.00072 * 359.97438 * 14 13 12 16 16 N 1.34781 * 120.00335 * 179.97438 * 14 13 12 17 17 C 1.37095 * 120.00076 * 179.97438 * 16 14 13 18 18 H 1.07998 * 120.00243 * 0.02562 * 17 16 14 19 19 C 1.38957 * 119.99616 * 180.02562 * 17 16 14 20 20 N 1.31411 * 120.00207 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99528 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47419 * 60.00303 * 21 19 17 23 23 H 1.48500 * 109.46901 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47538 * 299.99812 * 21 19 17 25 25 C 1.48719 * 104.28917 * 320.57555 * 12 11 9 26 26 C 1.54265 * 110.32155 * 204.99929 * 9 8 6 27 27 C 1.52997 * 110.32509 * 359.97438 * 26 9 8 28 28 C 1.53003 * 110.32471 * 122.10624 * 26 9 8 29 29 H 4.44655 * 5.63344 * 180.02562 * 4 1 2 30 30 H 1.08995 * 109.47556 * 295.09810 * 3 2 1 31 31 H 1.09004 * 109.46488 * 175.09880 * 3 2 1 32 32 H 1.08995 * 109.47311 * 59.99190 * 4 3 2 33 33 H 1.09004 * 109.46621 * 299.99718 * 4 3 2 34 34 H 1.09000 * 109.47070 * 60.00259 * 5 4 3 35 35 H 1.08996 * 109.47028 * 299.99112 * 5 4 3 36 36 H 0.97006 * 119.99724 * 359.97438 * 8 6 5 37 37 H 1.09004 * 110.41355 * 261.52970 * 11 9 8 38 38 H 1.09004 * 110.41402 * 23.96955 * 11 9 8 39 39 H 1.09000 * 109.47008 * 50.12218 * 13 12 11 40 40 H 1.09000 * 109.47842 * 170.12431 * 13 12 11 41 41 H 0.97003 * 119.99644 * 0.02562 * 16 14 13 42 42 H 0.96994 * 119.99701 * 180.02562 * 20 19 17 43 43 H 1.08999 * 110.38825 * 280.64074 * 25 12 11 44 44 H 1.08999 * 110.51386 * 158.14255 * 25 12 11 45 45 H 1.09002 * 109.47153 * 181.42807 * 27 26 9 46 46 H 1.09001 * 109.46832 * 61.42998 * 27 26 9 47 47 H 1.09004 * 109.47261 * 301.42980 * 27 26 9 48 48 H 1.09004 * 109.46641 * 298.57159 * 28 26 9 49 49 H 1.08995 * 109.47206 * 58.56557 * 28 26 9 50 50 H 1.08994 * 109.46816 * 178.57372 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1564 -0.8244 -1.1832 5 6 4.6864 -0.8231 -1.1834 6 6 5.1891 -1.6362 -2.3484 7 8 4.4012 -2.1651 -3.1038 8 7 6.5142 -1.7766 -2.5504 9 6 7.0029 -2.5666 -3.6832 10 1 6.3202 -3.3895 -3.8945 11 6 7.1661 -1.6716 -4.9304 12 7 8.3883 -2.1841 -5.6016 13 6 8.9611 -1.1708 -6.4977 14 6 8.0532 -0.9795 -7.6852 15 8 7.0299 -1.6242 -7.7763 16 7 8.3783 -0.0920 -8.6461 17 6 7.5525 0.0816 -9.7266 18 1 6.6414 -0.4924 -9.8077 19 6 7.8880 0.9963 -10.7174 20 7 8.9970 1.6945 -10.6190 21 14 6.7626 1.2334 -12.1893 22 1 5.4263 1.6833 -11.7234 23 1 7.3413 2.2582 -13.0949 24 1 6.6252 -0.0523 -12.9196 25 6 9.3185 -2.4942 -4.4835 26 6 8.4178 -3.1064 -3.3892 27 6 8.8824 -2.6527 -2.0038 28 6 8.4336 -4.6336 -3.4808 29 1 -1.0499 0.0000 -0.0003 30 1 3.0095 -0.4350 0.9306 31 1 3.0087 1.0248 -0.0878 32 1 2.7928 -0.3886 -2.1137 33 1 2.7935 -1.8485 -1.0954 34 1 5.0502 -1.2587 -0.2529 35 1 5.0488 0.2011 -1.2715 36 1 7.1444 -1.3539 -1.9460 37 1 6.3015 -1.7723 -5.5865 38 1 7.3020 -0.6308 -4.6364 39 1 9.0619 -0.2271 -5.9617 40 1 9.9420 -1.5009 -6.8398 41 1 9.1968 0.4234 -8.5734 42 1 9.2309 2.3332 -11.3104 43 1 9.7923 -1.5825 -4.1197 44 1 10.0722 -3.2143 -4.8022 45 1 9.8923 -3.0201 -1.8209 46 1 8.2080 -3.0513 -1.2459 47 1 8.8781 -1.5637 -1.9577 48 1 7.7553 -5.0493 -2.7357 49 1 8.1127 -4.9412 -4.4760 50 1 9.4440 -4.9982 -3.2959 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276580219.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:59 Heat of formation + Delta-G solvation = -21.306502 kcal Electronic energy + Delta-G solvation = -28921.362298 eV Core-core repulsion = 24949.817739 eV Total energy + Delta-G solvation = -3971.544559 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.55175 -39.01911 -37.84935 -35.84398 -34.75029 -33.81520 -33.26646 -32.51016 -31.19911 -29.47980 -28.19395 -27.50163 -27.00218 -25.06297 -23.88128 -22.62519 -21.31051 -20.29660 -19.47620 -18.90075 -18.45684 -17.79881 -17.13172 -16.29630 -16.16685 -15.96884 -15.14971 -15.02742 -14.75103 -14.51313 -14.29228 -14.09890 -13.95993 -13.86200 -13.70990 -13.18275 -13.06274 -12.81766 -12.74685 -12.60553 -12.30053 -11.99428 -11.83327 -11.77967 -11.61677 -11.46142 -11.26437 -11.18315 -11.04243 -10.95250 -10.80612 -10.54131 -10.46515 -10.40524 -10.34744 -10.17373 -9.86370 -9.44580 -9.06608 -8.47854 -7.99799 -7.90459 -6.37989 -3.78372 2.54439 2.59388 2.60830 3.07344 3.23361 3.28261 3.33403 3.94744 4.06172 4.11202 4.30316 4.32686 4.55641 4.56422 4.71499 4.76696 4.78788 5.06605 5.14884 5.15106 5.19477 5.24465 5.28094 5.29768 5.30455 5.36529 5.45891 5.51009 5.58478 5.70094 5.73551 5.78210 5.84727 5.86572 5.88912 5.92258 5.98748 6.03865 6.14421 6.24057 6.30298 6.43311 6.51255 7.12454 7.21529 7.38290 7.42123 7.58977 8.10165 8.19395 8.66254 9.22430 9.58515 10.11070 10.79889 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008830 B = 0.002686 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3170.256754 B =10422.389369 C =12955.050651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.186 4.186 3 C -0.013 4.013 4 C -0.101 4.101 5 C -0.141 4.141 6 C 0.508 3.492 7 O -0.531 6.531 8 N -0.727 5.727 9 C 0.147 3.853 10 H 0.102 0.898 11 C 0.032 3.968 12 N -0.481 5.481 13 C 0.036 3.964 14 C 0.444 3.556 15 O -0.574 6.574 16 N -0.566 5.566 17 C -0.297 4.297 18 H 0.102 0.898 19 C 0.021 3.979 20 N -0.904 5.904 21 Si 0.930 3.070 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.273 1.273 25 C 0.037 3.963 26 C -0.075 4.075 27 C -0.143 4.143 28 C -0.133 4.133 29 H 0.216 0.784 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.399 0.601 37 H 0.104 0.896 38 H 0.039 0.961 39 H 0.048 0.952 40 H 0.090 0.910 41 H 0.391 0.609 42 H 0.271 0.729 43 H 0.043 0.957 44 H 0.084 0.916 45 H 0.063 0.937 46 H 0.062 0.938 47 H 0.055 0.945 48 H 0.053 0.947 49 H 0.069 0.931 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.830 -4.065 24.920 25.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.186 4.186 3 C -0.050 4.050 4 C -0.139 4.139 5 C -0.181 4.181 6 C 0.294 3.706 7 O -0.407 6.407 8 N -0.382 5.382 9 C 0.042 3.958 10 H 0.120 0.880 11 C -0.097 4.097 12 N -0.205 5.205 13 C -0.096 4.096 14 C 0.229 3.771 15 O -0.458 6.458 16 N -0.203 5.203 17 C -0.426 4.426 18 H 0.120 0.880 19 C -0.180 4.180 20 N -0.546 5.546 21 Si 0.757 3.243 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.199 1.199 25 C -0.091 4.091 26 C -0.076 4.076 27 C -0.201 4.201 28 C -0.191 4.191 29 H 0.233 0.767 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.236 0.764 37 H 0.123 0.877 38 H 0.057 0.943 39 H 0.066 0.934 40 H 0.108 0.892 41 H 0.224 0.776 42 H 0.081 0.919 43 H 0.061 0.939 44 H 0.102 0.898 45 H 0.082 0.918 46 H 0.081 0.919 47 H 0.074 0.926 48 H 0.072 0.928 49 H 0.088 0.912 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.118 -5.204 23.821 24.475 hybrid contribution 0.463 1.627 -0.054 1.692 sum -1.655 -3.577 23.767 24.091 Atomic orbital electron populations 1.24923 0.96033 1.01036 1.00823 1.23093 0.94593 1.00434 1.00500 1.18764 0.84927 1.01638 0.99633 1.21289 0.92892 1.01388 0.98311 1.21678 0.97546 1.01286 0.97548 1.20705 0.82381 0.81088 0.86418 1.90760 1.55206 1.47640 1.47104 1.46366 1.07106 1.53963 1.30730 1.21835 0.94782 0.94183 0.84985 0.88020 1.23551 0.95947 0.95655 0.94575 1.65128 1.03470 1.38467 1.13434 1.22055 0.98824 0.93847 0.94851 1.19706 0.88298 0.83995 0.85070 1.90525 1.27222 1.49153 1.78857 1.41844 1.23139 1.35823 1.19506 1.19650 1.04533 1.20855 0.97607 0.88001 1.25245 0.97043 0.96315 0.99385 1.69603 1.23536 1.25742 1.35677 0.85928 0.79798 0.78070 0.80494 1.19934 1.21016 1.19881 1.23330 0.95512 0.99459 0.90822 1.21529 0.94155 0.96968 0.94942 1.21871 1.01739 1.00585 0.95880 1.21813 1.01574 0.92846 1.02835 0.76708 0.89572 0.89460 0.90493 0.90681 0.88801 0.88662 0.76376 0.87746 0.94276 0.93391 0.89194 0.77572 0.91901 0.93875 0.89773 0.91795 0.91932 0.92627 0.92820 0.91193 0.92434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.90 19.25 29.55 0.57 -1.33 16 2 C -0.19 -1.79 13.34 -37.12 -0.50 -2.29 16 3 C -0.01 -0.09 5.70 -29.52 -0.17 -0.26 16 4 C -0.10 -0.90 4.46 -26.73 -0.12 -1.02 16 5 C -0.14 -1.04 5.70 -27.88 -0.16 -1.19 16 6 C 0.51 6.02 7.83 -10.99 -0.09 5.94 16 7 O -0.53 -8.97 15.63 5.55 0.09 -8.88 16 8 N -0.73 -7.52 4.54 -52.47 -0.24 -7.75 16 9 C 0.15 1.93 3.04 -66.55 -0.20 1.73 16 10 H 0.10 1.57 7.13 -51.93 -0.37 1.20 16 11 C 0.03 0.53 5.52 -2.19 -0.01 0.52 16 12 N -0.48 -8.06 5.06 -231.28 -1.17 -9.23 16 13 C 0.04 0.65 5.30 -4.98 -0.03 0.63 16 14 C 0.44 10.75 7.58 -10.98 -0.08 10.67 16 15 O -0.57 -16.02 14.42 5.55 0.08 -15.94 16 16 N -0.57 -14.62 5.29 -10.96 -0.06 -14.68 16 17 C -0.30 -8.45 9.68 -14.93 -0.14 -8.59 16 18 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 19 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 20 N -0.90 -24.91 13.05 55.50 0.72 -24.18 16 21 Si 0.93 21.52 29.55 -169.99 -5.02 16.50 16 22 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 24 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 25 C 0.04 0.45 5.60 -2.09 -0.01 0.44 16 26 C -0.07 -0.77 1.03 -153.12 -0.16 -0.93 16 27 C -0.14 -1.02 7.11 37.16 0.26 -0.75 16 28 C -0.13 -1.33 8.23 37.16 0.31 -1.02 16 29 H 0.22 1.23 7.80 -54.10 -0.42 0.81 16 30 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 33 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 34 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.40 2.89 5.89 -40.82 -0.24 2.65 16 37 H 0.10 2.25 6.91 -51.93 -0.36 1.89 16 38 H 0.04 0.64 7.74 -51.93 -0.40 0.24 16 39 H 0.05 0.79 7.88 -51.93 -0.41 0.38 16 40 H 0.09 1.46 8.13 -51.93 -0.42 1.04 16 41 H 0.39 9.62 7.90 -40.82 -0.32 9.30 16 42 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 43 H 0.04 0.47 7.70 -51.93 -0.40 0.07 16 44 H 0.08 0.96 7.86 -51.93 -0.41 0.55 16 45 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.06 0.40 7.83 -51.93 -0.41 -0.01 16 47 H 0.05 0.35 6.86 -51.93 -0.36 -0.01 16 48 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 49 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 50 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 410.17 15.07 6.18 6.18 Total: -1.00 -35.40 410.17 -8.29 -43.69 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: -8.25 Total: 11.28 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: -0.62 Total: 3.01 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: -0.74 Total: -55.85 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: 0.17 Total: -24.82 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.40 -8.29 -43.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276580219.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.386 kcal (2) G-P(sol) polarization free energy of solvation -35.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds