Wall clock time and date at job start Tue Mar 31 2020 19:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.53005 * 109.47387 * 55.10469 * 3 2 1 5 5 C 1.52999 * 109.46991 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.46733 * 179.97438 * 5 4 3 7 7 O 1.21286 * 120.00243 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00163 * 180.02562 * 6 5 4 9 9 C 1.46499 * 120.00313 * 180.02562 * 8 6 5 10 10 H 1.09000 * 110.36947 * 327.17474 * 9 8 6 11 11 C 1.54375 * 110.32650 * 89.35886 * 9 8 6 12 12 N 1.48556 * 104.59628 * 142.74887 * 11 9 8 13 13 C 1.46893 * 111.00505 * 200.95934 * 12 11 9 14 14 C 1.50700 * 109.47144 * 290.12799 * 13 12 11 15 15 O 1.21288 * 120.00072 * 359.97438 * 14 13 12 16 16 N 1.34781 * 120.00335 * 179.97438 * 14 13 12 17 17 C 1.37095 * 120.00076 * 179.97438 * 16 14 13 18 18 H 1.07998 * 120.00243 * 0.02562 * 17 16 14 19 19 C 1.38957 * 119.99616 * 180.02562 * 17 16 14 20 20 N 1.31411 * 120.00207 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99528 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47419 * 60.00303 * 21 19 17 23 23 H 1.48500 * 109.46901 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47538 * 299.99812 * 21 19 17 25 25 C 1.48719 * 104.28917 * 320.57555 * 12 11 9 26 26 C 1.54265 * 110.32155 * 204.99929 * 9 8 6 27 27 C 1.52997 * 110.32509 * 359.97438 * 26 9 8 28 28 C 1.53003 * 110.32471 * 122.10624 * 26 9 8 29 29 H 4.44655 * 5.63344 * 180.02562 * 4 1 2 30 30 H 1.08995 * 109.47556 * 295.09810 * 3 2 1 31 31 H 1.09004 * 109.46488 * 175.09880 * 3 2 1 32 32 H 1.08995 * 109.47311 * 59.99190 * 4 3 2 33 33 H 1.09004 * 109.46621 * 299.99718 * 4 3 2 34 34 H 1.09000 * 109.47070 * 60.00259 * 5 4 3 35 35 H 1.08996 * 109.47028 * 299.99112 * 5 4 3 36 36 H 0.97006 * 119.99724 * 359.97438 * 8 6 5 37 37 H 1.09004 * 110.41355 * 261.52970 * 11 9 8 38 38 H 1.09004 * 110.41402 * 23.96955 * 11 9 8 39 39 H 1.09000 * 109.47008 * 50.12218 * 13 12 11 40 40 H 1.09000 * 109.47842 * 170.12431 * 13 12 11 41 41 H 0.97003 * 119.99644 * 0.02562 * 16 14 13 42 42 H 0.96994 * 119.99701 * 180.02562 * 20 19 17 43 43 H 1.08999 * 110.38825 * 280.64074 * 25 12 11 44 44 H 1.08999 * 110.51386 * 158.14255 * 25 12 11 45 45 H 1.09002 * 109.47153 * 181.42807 * 27 26 9 46 46 H 1.09001 * 109.46832 * 61.42998 * 27 26 9 47 47 H 1.09004 * 109.47261 * 301.42980 * 27 26 9 48 48 H 1.09004 * 109.46641 * 298.57159 * 28 26 9 49 49 H 1.08995 * 109.47206 * 58.56557 * 28 26 9 50 50 H 1.08994 * 109.46816 * 178.57372 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1564 -0.8244 -1.1832 5 6 4.6864 -0.8231 -1.1834 6 6 5.1891 -1.6362 -2.3484 7 8 4.4012 -2.1651 -3.1038 8 7 6.5142 -1.7766 -2.5504 9 6 7.0029 -2.5666 -3.6832 10 1 6.3202 -3.3895 -3.8945 11 6 7.1661 -1.6716 -4.9304 12 7 8.3883 -2.1841 -5.6016 13 6 8.9611 -1.1708 -6.4977 14 6 8.0532 -0.9795 -7.6852 15 8 7.0299 -1.6242 -7.7763 16 7 8.3783 -0.0920 -8.6461 17 6 7.5525 0.0816 -9.7266 18 1 6.6414 -0.4924 -9.8077 19 6 7.8880 0.9963 -10.7174 20 7 8.9970 1.6945 -10.6190 21 14 6.7626 1.2334 -12.1893 22 1 5.4263 1.6833 -11.7234 23 1 7.3413 2.2582 -13.0949 24 1 6.6252 -0.0523 -12.9196 25 6 9.3185 -2.4942 -4.4835 26 6 8.4178 -3.1064 -3.3892 27 6 8.8824 -2.6527 -2.0038 28 6 8.4336 -4.6336 -3.4808 29 1 -1.0499 0.0000 -0.0003 30 1 3.0095 -0.4350 0.9306 31 1 3.0087 1.0248 -0.0878 32 1 2.7928 -0.3886 -2.1137 33 1 2.7935 -1.8485 -1.0954 34 1 5.0502 -1.2587 -0.2529 35 1 5.0488 0.2011 -1.2715 36 1 7.1444 -1.3539 -1.9460 37 1 6.3015 -1.7723 -5.5865 38 1 7.3020 -0.6308 -4.6364 39 1 9.0619 -0.2271 -5.9617 40 1 9.9420 -1.5009 -6.8398 41 1 9.1968 0.4234 -8.5734 42 1 9.2309 2.3332 -11.3104 43 1 9.7923 -1.5825 -4.1197 44 1 10.0722 -3.2143 -4.8022 45 1 9.8923 -3.0201 -1.8209 46 1 8.2080 -3.0513 -1.2459 47 1 8.8781 -1.5637 -1.9577 48 1 7.7553 -5.0493 -2.7357 49 1 8.1127 -4.9412 -4.4760 50 1 9.4440 -4.9982 -3.2959 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276580219.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:58 Heat of formation + Delta-G solvation = -47.797696 kcal Electronic energy + Delta-G solvation = -28922.511042 eV Core-core repulsion = 24949.817739 eV Total energy + Delta-G solvation = -3972.693303 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.60185 -40.33598 -39.47455 -36.54592 -36.19277 -35.60628 -34.30436 -33.29343 -33.20599 -30.62382 -29.17395 -28.41719 -27.91518 -26.73734 -25.17069 -23.56764 -22.45959 -21.24213 -21.06357 -20.14939 -19.80018 -19.13252 -18.07301 -17.64900 -17.34833 -16.92643 -16.59418 -16.40264 -16.14981 -15.78064 -15.50748 -15.39921 -15.10653 -14.97280 -14.67194 -14.37218 -14.10157 -14.05316 -13.70065 -13.52563 -13.46323 -13.27459 -13.05365 -13.01648 -12.79228 -12.59540 -12.48651 -12.45929 -12.37501 -12.14683 -11.94240 -11.83577 -11.74653 -11.56201 -11.48561 -11.18408 -10.97413 -10.86164 -10.34146 -10.10422 -10.02367 -9.37851 -8.48696 -5.97168 1.36965 1.38415 1.49483 1.66644 1.83137 1.91871 2.03760 2.18112 2.27624 2.86813 3.17316 3.32674 3.48040 3.52939 3.63083 3.79490 3.91591 4.08413 4.15990 4.16300 4.22485 4.29775 4.37577 4.40911 4.50203 4.52828 4.67701 4.69578 4.70258 4.77876 4.80079 4.81900 4.87062 5.01837 5.04944 5.07778 5.19327 5.20610 5.21066 5.32058 5.35159 5.38234 5.44709 5.47732 5.81611 5.92626 6.07895 6.58304 6.59508 6.71607 7.11403 7.32395 7.54330 8.11866 8.68563 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008830 B = 0.002686 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3170.256754 B =10422.389369 C =12955.050651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.217 4.217 3 C -0.008 4.008 4 C -0.098 4.098 5 C -0.128 4.128 6 C 0.499 3.501 7 O -0.594 6.594 8 N -0.709 5.709 9 C 0.155 3.845 10 H 0.067 0.933 11 C 0.037 3.963 12 N -0.507 5.507 13 C 0.050 3.950 14 C 0.437 3.563 15 O -0.619 6.619 16 N -0.573 5.573 17 C -0.334 4.334 18 H 0.073 0.927 19 C -0.011 4.011 20 N -0.918 5.918 21 Si 0.991 3.009 22 H -0.274 1.274 23 H -0.266 1.266 24 H -0.273 1.273 25 C 0.038 3.962 26 C -0.065 4.065 27 C -0.139 4.139 28 C -0.132 4.132 29 H 0.238 0.762 30 H 0.113 0.887 31 H 0.105 0.895 32 H 0.043 0.957 33 H 0.054 0.946 34 H 0.136 0.864 35 H 0.123 0.877 36 H 0.419 0.581 37 H 0.041 0.959 38 H 0.042 0.958 39 H 0.072 0.928 40 H 0.116 0.884 41 H 0.397 0.603 42 H 0.278 0.722 43 H 0.067 0.933 44 H 0.096 0.904 45 H 0.082 0.918 46 H 0.074 0.926 47 H 0.069 0.931 48 H 0.059 0.941 49 H 0.039 0.961 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.541 -3.076 27.783 27.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.217 4.217 3 C -0.045 4.045 4 C -0.136 4.136 5 C -0.167 4.167 6 C 0.288 3.712 7 O -0.474 6.474 8 N -0.365 5.365 9 C 0.049 3.951 10 H 0.085 0.915 11 C -0.092 4.092 12 N -0.232 5.232 13 C -0.082 4.082 14 C 0.225 3.775 15 O -0.505 6.505 16 N -0.211 5.211 17 C -0.464 4.464 18 H 0.091 0.909 19 C -0.211 4.211 20 N -0.559 5.559 21 Si 0.814 3.186 22 H -0.200 1.200 23 H -0.190 1.190 24 H -0.198 1.198 25 C -0.089 4.089 26 C -0.066 4.066 27 C -0.196 4.196 28 C -0.189 4.189 29 H 0.254 0.746 30 H 0.131 0.869 31 H 0.123 0.877 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.154 0.846 35 H 0.141 0.859 36 H 0.261 0.739 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.089 0.911 40 H 0.134 0.866 41 H 0.231 0.769 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.114 0.886 45 H 0.101 0.899 46 H 0.092 0.908 47 H 0.088 0.912 48 H 0.078 0.922 49 H 0.058 0.942 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.322 -4.187 26.734 27.062 hybrid contribution -0.315 1.273 -0.965 1.628 sum 0.007 -2.915 25.769 25.934 Atomic orbital electron populations 1.25712 0.97169 1.00748 1.00472 1.23911 0.95988 1.00842 1.00927 1.18860 0.83563 1.02416 0.99619 1.21192 0.94344 1.00279 0.97786 1.21718 0.95956 1.02127 0.96901 1.21663 0.82237 0.80462 0.86887 1.90746 1.56776 1.50278 1.49577 1.46208 1.07207 1.53214 1.29875 1.21508 0.96266 0.92738 0.84615 0.91460 1.23306 0.94135 0.96714 0.95060 1.65008 1.04619 1.38038 1.15523 1.21921 0.97879 0.95684 0.92690 1.20884 0.88354 0.82293 0.86003 1.90507 1.29504 1.50509 1.80016 1.41900 1.23112 1.36554 1.19566 1.19570 1.04812 1.22230 0.99750 0.90857 1.25999 0.98399 0.95366 1.01353 1.69653 1.24175 1.25608 1.36501 0.85031 0.77929 0.78281 0.77340 1.19982 1.19042 1.19813 1.23489 0.95036 1.00884 0.89486 1.21525 0.91383 0.96907 0.96795 1.21876 1.02961 1.01625 0.93187 1.21804 1.03030 0.92783 1.01299 0.74567 0.86887 0.87658 0.93848 0.92754 0.84616 0.85857 0.73938 0.94008 0.93952 0.91063 0.86642 0.76926 0.91221 0.91454 0.88551 0.89875 0.90755 0.91172 0.92228 0.94207 0.90033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.99 19.25 74.32 1.43 -2.56 16 2 C -0.22 -4.09 13.34 31.12 0.42 -3.67 16 3 C -0.01 -0.10 5.70 28.79 0.16 0.06 16 4 C -0.10 -1.74 4.46 30.60 0.14 -1.60 16 5 C -0.13 -1.59 5.70 29.85 0.17 -1.42 16 6 C 0.50 11.78 7.83 87.66 0.69 12.47 16 7 O -0.59 -21.61 15.63 -3.05 -0.05 -21.66 16 8 N -0.71 -13.72 4.54 -438.29 -1.99 -15.71 16 9 C 0.16 4.12 3.04 45.89 0.14 4.26 16 10 H 0.07 2.27 7.13 -2.39 -0.02 2.25 16 11 C 0.04 1.32 5.52 86.45 0.48 1.79 16 12 N -0.51 -17.03 5.06 -885.62 -4.48 -21.52 16 13 C 0.05 1.77 5.30 85.56 0.45 2.23 16 14 C 0.44 21.99 7.58 87.66 0.66 22.66 16 15 O -0.62 -36.90 14.42 -3.05 -0.04 -36.94 16 16 N -0.57 -30.57 5.29 -306.98 -1.62 -32.19 16 17 C -0.33 -19.74 9.68 84.04 0.81 -18.93 16 18 H 0.07 4.67 7.16 -2.91 -0.02 4.65 16 19 C -0.01 -0.62 5.50 84.93 0.47 -0.16 16 20 N -0.92 -50.39 13.05 21.67 0.28 -50.11 16 21 Si 0.99 44.43 29.55 68.60 2.03 46.46 16 22 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 23 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 24 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 25 C 0.04 0.82 5.60 86.42 0.48 1.30 16 26 C -0.07 -1.20 1.03 -51.28 -0.05 -1.25 16 27 C -0.14 -1.32 7.11 71.98 0.51 -0.81 16 28 C -0.13 -2.43 8.23 71.98 0.59 -1.84 16 29 H 0.24 2.59 7.80 -4.42 -0.03 2.55 16 30 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.11 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.04 1.04 8.10 -2.39 -0.02 1.02 16 33 H 0.05 1.17 8.10 -2.39 -0.02 1.15 16 34 H 0.14 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.42 4.55 5.89 -92.70 -0.55 4.00 16 37 H 0.04 1.99 6.91 -2.38 -0.02 1.97 16 38 H 0.04 1.41 7.74 -2.38 -0.02 1.40 16 39 H 0.07 2.22 7.88 -2.39 -0.02 2.20 16 40 H 0.12 3.53 8.13 -2.39 -0.02 3.52 16 41 H 0.40 19.81 7.90 -92.71 -0.73 19.07 16 42 H 0.28 14.27 8.31 -92.71 -0.77 13.50 16 43 H 0.07 1.17 7.70 -2.39 -0.02 1.15 16 44 H 0.10 1.87 7.86 -2.39 -0.02 1.85 16 45 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 46 H 0.07 0.59 7.83 -2.39 -0.02 0.57 16 47 H 0.07 0.50 6.86 -2.38 -0.02 0.48 16 48 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 49 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 50 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -85.68 410.17 1.34 -84.34 By element: Atomic # 1 Polarization: 35.13 SS G_CDS: -0.34 Total: 34.79 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: 7.55 Total: 12.53 kcal Atomic # 7 Polarization: -111.71 SS G_CDS: -7.81 Total: -119.52 kcal Atomic # 8 Polarization: -58.51 SS G_CDS: -0.09 Total: -58.60 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -85.68 1.34 -84.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276580219.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.544 kcal (2) G-P(sol) polarization free energy of solvation -85.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds