Wall clock time and date at job start Tue Mar 31 2020 20:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.33696 * 126.27317 * 2 1 4 4 C 1.30615 * 108.99302 * 180.26011 * 3 2 1 5 5 C 1.50709 * 125.41903 * 179.74101 * 4 3 2 6 6 C 1.52990 * 109.47267 * 300.02176 * 5 4 3 7 7 C 1.52999 * 109.46742 * 60.02423 * 5 4 3 8 8 O 1.33664 * 109.15782 * 359.76247 * 4 3 2 9 9 C 1.35337 * 107.68247 * 0.02562 * 8 4 3 10 10 C 1.46725 * 126.64357 * 179.97438 * 9 8 4 11 11 O 1.21681 * 119.99956 * 180.02562 * 10 9 8 12 12 N 1.34773 * 119.99817 * 0.02562 * 10 9 8 13 13 C 1.46497 * 120.00012 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47237 * 180.02562 * 13 12 10 15 15 C 1.53006 * 109.47304 * 179.97438 * 14 13 12 16 16 N 1.46502 * 109.47247 * 179.97438 * 15 14 13 17 17 C 1.36933 * 120.00339 * 270.00603 * 16 15 14 18 18 H 1.07995 * 120.00560 * 140.53619 * 17 16 15 19 19 C 1.38814 * 119.99406 * 320.53203 * 17 16 15 20 20 N 1.31612 * 120.00673 * 340.28245 * 19 17 16 21 21 Si 1.86808 * 119.99645 * 160.28451 * 19 17 16 22 22 H 1.48502 * 109.47107 * 89.99984 * 21 19 17 23 23 H 1.48501 * 109.47081 * 210.00085 * 21 19 17 24 24 H 1.48496 * 109.47165 * 330.00187 * 21 19 17 25 25 C 1.46499 * 119.99505 * 90.00162 * 16 15 14 26 26 C 1.53000 * 117.49756 * 183.28633 * 25 16 15 27 27 C 1.52994 * 60.00104 * 252.51432 * 26 25 16 28 28 H 1.08998 * 109.47052 * 270.13942 * 1 2 3 29 29 H 1.09002 * 109.47173 * 30.13900 * 1 2 3 30 30 H 1.09006 * 109.47038 * 150.14230 * 1 2 3 31 31 H 1.09003 * 109.47053 * 180.02562 * 5 4 3 32 32 H 1.09006 * 109.47399 * 60.00346 * 6 5 4 33 33 H 1.09001 * 109.47304 * 179.97438 * 6 5 4 34 34 H 1.08997 * 109.47346 * 300.00156 * 6 5 4 35 35 H 1.08999 * 109.47509 * 299.99523 * 7 5 4 36 36 H 1.08995 * 109.47489 * 60.00036 * 7 5 4 37 37 H 1.09002 * 109.47268 * 179.97438 * 7 5 4 38 38 H 0.97005 * 120.00330 * 359.97438 * 12 10 9 39 39 H 1.09002 * 109.47691 * 59.99949 * 13 12 10 40 40 H 1.09001 * 109.47186 * 299.99651 * 13 12 10 41 41 H 1.09002 * 109.47441 * 59.99886 * 14 13 12 42 42 H 1.08999 * 109.47330 * 299.99481 * 14 13 12 43 43 H 1.09002 * 109.46664 * 59.99778 * 15 14 13 44 44 H 1.08998 * 109.47308 * 300.00298 * 15 14 13 45 45 H 0.97000 * 120.00354 * 175.01784 * 20 19 17 46 46 H 1.09001 * 115.55457 * 328.99834 * 25 16 15 47 47 H 1.09004 * 117.49643 * 0.02562 * 26 25 16 48 48 H 1.08997 * 117.49838 * 145.01935 * 26 25 16 49 49 H 1.09006 * 117.49900 * 252.51071 * 27 26 25 50 50 H 1.08996 * 117.52328 * 107.48177 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0779 0.0000 4 6 3.5452 0.6899 -0.0056 5 6 4.7440 1.6032 -0.0131 6 6 4.7061 2.4843 -1.2632 7 6 4.7190 2.4875 1.2352 8 8 3.5890 -0.6460 -0.0041 9 6 2.3137 -1.0991 0.0021 10 6 1.8827 -2.5017 0.0053 11 8 0.6967 -2.7737 0.0105 12 7 2.8005 -3.4886 0.0024 13 6 2.3702 -4.8890 0.0050 14 6 3.5992 -5.8002 0.0015 15 6 3.1498 -7.2628 0.0049 16 7 4.3267 -8.1353 0.0009 17 6 4.8719 -8.5442 -1.1868 18 1 5.9447 -8.6000 -1.2977 19 6 4.0456 -8.8871 -2.2482 20 7 2.7856 -9.1971 -2.0279 21 14 4.7221 -8.9085 -3.9893 22 1 5.2593 -10.2588 -4.2950 23 1 3.6355 -8.5797 -4.9466 24 1 5.8092 -7.9042 -4.1104 25 6 4.9202 -8.5702 1.2677 26 6 6.1926 -9.4170 1.1978 27 6 4.8648 -10.0631 1.5980 28 1 -0.3633 0.0025 1.0276 29 1 -0.3633 0.8887 -0.5160 30 1 -0.3633 -0.8913 -0.5117 31 1 5.6558 1.0059 -0.0171 32 1 3.7943 3.0817 -1.2593 33 1 5.5729 3.1451 -1.2684 34 1 4.7238 1.8542 -2.1525 35 1 3.8073 3.0849 1.2392 36 1 4.7461 1.8598 2.1258 37 1 5.5863 3.1478 1.2301 38 1 3.7460 -3.2718 -0.0021 39 1 1.7688 -5.0861 -0.8825 40 1 1.7757 -5.0848 0.8974 41 1 4.2002 -5.6031 0.8893 42 1 4.1940 -5.6046 -0.8907 43 1 2.5486 -7.4601 -0.8827 44 1 2.5552 -7.4581 0.8972 45 1 2.1900 -9.3661 -2.7746 46 1 4.8276 -7.8677 2.0960 47 1 6.5883 -9.6501 0.2092 48 1 6.9375 -9.2715 1.9801 49 1 4.7361 -10.3428 2.6437 50 1 4.3863 -10.7215 0.8731 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316925052.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:12 Heat of formation + Delta-G solvation = -6.041455 kcal Electronic energy + Delta-G solvation = -28579.743828 eV Core-core repulsion = 24608.861212 eV Total energy + Delta-G solvation = -3970.882617 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -44.61963 -40.73825 -38.85061 -37.04071 -36.83517 -36.15424 -35.25680 -33.44401 -32.16797 -31.18761 -29.02819 -28.11754 -27.15328 -25.69976 -24.81576 -23.14469 -22.89642 -22.51391 -21.84928 -21.46148 -21.35785 -19.24059 -18.28037 -18.14276 -17.36989 -17.27499 -17.02685 -16.56720 -16.43345 -15.75547 -15.69606 -15.41377 -15.06838 -15.02755 -14.41821 -14.34045 -14.20119 -14.07949 -13.91203 -13.65704 -13.36871 -13.25819 -13.09270 -12.80122 -12.73623 -12.59423 -12.48526 -12.33664 -12.31936 -12.22332 -12.05087 -12.00127 -11.88684 -11.82318 -11.44593 -11.33560 -11.25962 -10.88328 -10.48327 -10.40246 -9.88913 -8.49303 -7.78677 -5.50826 -0.36869 1.19648 1.23297 1.42672 1.46432 1.54451 1.87557 2.00450 2.48393 2.73805 3.16228 3.41346 3.49328 3.54056 3.55433 3.90935 4.01946 4.04736 4.14796 4.23898 4.33092 4.34675 4.41809 4.45850 4.54606 4.59745 4.63640 4.73310 4.74833 4.77579 4.78389 4.86640 4.89207 4.91097 4.95717 5.05539 5.06874 5.09149 5.18121 5.27572 5.29933 5.37017 5.37472 5.45621 5.56648 5.68253 5.81969 6.19343 6.47148 6.47822 6.86343 7.16585 7.84783 8.36883 9.10478 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012659 B = 0.002319 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.315282 B =12071.832098 C =12150.164619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.077 3.923 3 N -0.499 5.499 4 C 0.233 3.767 5 C -0.003 4.003 6 C -0.141 4.141 7 C -0.140 4.140 8 O -0.191 6.191 9 C -0.141 4.141 10 C 0.605 3.395 11 O -0.544 6.544 12 N -0.704 5.704 13 C 0.133 3.867 14 C -0.124 4.124 15 C 0.155 3.845 16 N -0.569 5.569 17 C -0.259 4.259 18 H 0.058 0.942 19 C -0.033 4.033 20 N -0.913 5.913 21 Si 0.949 3.051 22 H -0.287 1.287 23 H -0.293 1.293 24 H -0.269 1.269 25 C 0.103 3.897 26 C -0.181 4.181 27 C -0.222 4.222 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.121 0.879 32 H 0.060 0.940 33 H 0.101 0.899 34 H 0.052 0.948 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.101 0.899 38 H 0.413 0.587 39 H 0.055 0.945 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.054 0.946 43 H 0.062 0.938 44 H 0.033 0.967 45 H 0.250 0.750 46 H 0.114 0.886 47 H 0.073 0.927 48 H 0.111 0.889 49 H 0.100 0.900 50 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.526 23.701 6.643 25.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.047 4.047 3 N -0.229 5.229 4 C 0.027 3.973 5 C -0.022 4.022 6 C -0.199 4.199 7 C -0.197 4.197 8 O -0.078 6.078 9 C -0.196 4.196 10 C 0.391 3.609 11 O -0.424 6.424 12 N -0.354 5.354 13 C 0.009 3.991 14 C -0.164 4.164 15 C 0.029 3.971 16 N -0.286 5.286 17 C -0.389 4.389 18 H 0.076 0.924 19 C -0.230 4.230 20 N -0.557 5.557 21 Si 0.777 3.223 22 H -0.214 1.214 23 H -0.219 1.219 24 H -0.194 1.194 25 C -0.005 4.005 26 C -0.219 4.219 27 C -0.263 4.263 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.102 0.898 31 H 0.139 0.861 32 H 0.079 0.921 33 H 0.120 0.880 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.120 0.880 38 H 0.250 0.750 39 H 0.073 0.927 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.072 0.928 43 H 0.080 0.920 44 H 0.052 0.948 45 H 0.060 0.940 46 H 0.132 0.868 47 H 0.092 0.908 48 H 0.129 0.871 49 H 0.118 0.882 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.438 23.952 6.524 25.062 hybrid contribution 0.516 -1.361 -1.200 1.887 sum 3.954 22.591 5.324 23.544 Atomic orbital electron populations 1.20412 0.84275 1.04467 1.04331 1.22444 0.99247 0.86482 0.96528 1.70322 1.00861 1.30709 1.20980 1.27602 0.96578 0.78968 0.94121 1.20161 0.89410 0.93004 0.99669 1.21857 1.04299 0.99287 0.94409 1.21851 1.04269 0.99241 0.94382 1.84450 1.29170 1.24470 1.69741 1.22719 0.82021 0.95886 1.18932 1.16451 0.85604 0.81873 0.76929 1.90838 1.16744 1.82449 1.52377 1.45915 1.10182 1.06173 1.73113 1.21293 0.97628 0.78264 1.01884 1.22128 0.96209 0.96105 1.01954 1.20653 0.89002 0.86919 1.00575 1.43552 1.32438 1.52405 1.00222 1.19145 0.91019 1.38753 0.90005 0.92412 1.25869 0.96729 0.98059 1.02383 1.70172 1.06221 1.48360 1.30903 0.85588 0.77683 0.77910 0.81098 1.21352 1.21884 1.19352 1.21561 0.98318 0.90461 0.90176 1.23017 0.91172 1.05698 1.01981 1.23257 1.02208 1.00553 1.00244 0.89056 0.88950 0.89844 0.86124 0.92120 0.87985 0.92845 0.92137 0.92618 0.88016 0.75046 0.92675 0.90991 0.91131 0.92751 0.92015 0.94818 0.94040 0.86834 0.90822 0.87064 0.88162 0.92976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.73 9.87 71.24 0.70 -1.02 16 2 C 0.08 2.02 7.16 41.83 0.30 2.32 16 3 N -0.50 -12.02 11.26 -291.05 -3.28 -15.30 16 4 C 0.23 4.84 6.82 88.29 0.60 5.44 16 5 C 0.00 -0.04 3.39 -11.54 -0.04 -0.08 16 6 C -0.14 -1.38 9.17 71.98 0.66 -0.72 16 7 C -0.14 -1.29 9.18 71.98 0.66 -0.63 16 8 O -0.19 -4.62 10.57 -7.02 -0.07 -4.69 16 9 C -0.14 -3.90 7.18 24.05 0.17 -3.72 16 10 C 0.61 18.59 7.79 86.46 0.67 19.26 16 11 O -0.54 -19.31 14.79 -4.29 -0.06 -19.37 16 12 N -0.70 -19.94 5.55 -467.06 -2.59 -22.53 16 13 C 0.13 4.25 5.67 86.38 0.49 4.74 16 14 C -0.12 -4.31 5.65 30.60 0.17 -4.13 16 15 C 0.15 6.80 5.33 86.38 0.46 7.26 16 16 N -0.57 -26.91 2.75 -678.03 -1.86 -28.77 16 17 C -0.26 -13.56 8.47 84.03 0.71 -12.85 16 18 H 0.06 3.04 6.74 -2.91 -0.02 3.02 16 19 C -0.03 -1.76 4.98 84.86 0.42 -1.34 16 20 N -0.91 -52.43 11.50 21.65 0.25 -52.18 16 21 Si 0.95 43.78 29.60 68.60 2.03 45.81 16 22 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 23 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 24 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 25 C 0.10 4.13 6.56 44.99 0.30 4.43 16 26 C -0.18 -6.67 9.80 30.59 0.30 -6.37 16 27 C -0.22 -8.76 10.36 30.59 0.32 -8.44 16 28 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.08 2.09 6.47 -2.38 -0.02 2.08 16 31 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.05 0.61 8.14 -2.39 -0.02 0.60 16 35 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.10 0.41 8.14 -2.39 -0.02 0.40 16 38 H 0.41 10.05 8.27 -92.70 -0.77 9.28 16 39 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.07 2.26 8.14 -2.39 -0.02 2.25 16 41 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.06 3.18 5.59 -2.39 -0.01 3.17 16 44 H 0.03 1.41 8.07 -2.39 -0.02 1.40 16 45 H 0.25 14.02 8.32 -92.71 -0.77 13.25 16 46 H 0.11 3.89 8.14 -2.39 -0.02 3.88 16 47 H 0.07 3.08 6.46 -2.39 -0.02 3.06 16 48 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 49 H 0.10 3.30 8.14 -2.38 -0.02 3.28 16 50 H 0.05 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -66.57 413.08 1.48 -65.09 By element: Atomic # 1 Polarization: 27.64 SS G_CDS: 0.17 Total: 27.81 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: 6.90 Total: 4.14 kcal Atomic # 7 Polarization: -111.30 SS G_CDS: -7.48 Total: -118.78 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: -0.14 Total: -24.06 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -66.57 1.48 -65.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316925052.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.045 kcal (2) G-P(sol) polarization free energy of solvation -66.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds