Wall clock time and date at job start Tue Mar 31 2020 20:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.33685 * 126.28140 * 2 1 4 4 C 1.30613 * 108.99921 * 180.26762 * 3 2 1 5 5 C 1.50703 * 125.42580 * 179.70849 * 4 3 2 6 6 C 1.53005 * 109.47206 * 300.02838 * 5 4 3 7 7 C 1.52996 * 109.47080 * 60.02481 * 5 4 3 8 8 O 1.33661 * 109.15370 * 359.73316 * 4 3 2 9 9 C 1.35340 * 107.68733 * 359.97438 * 8 4 3 10 10 C 1.46721 * 126.64802 * 180.02562 * 9 8 4 11 11 O 1.21687 * 120.00226 * 180.02562 * 10 9 8 12 12 N 1.34774 * 119.99931 * 0.02562 * 10 9 8 13 13 C 1.48121 * 127.03198 * 0.04252 * 12 10 9 14 14 C 1.54949 * 103.25094 * 140.67458 * 13 12 10 15 15 H 1.08998 * 110.73606 * 155.71930 * 14 13 12 16 16 C 1.53000 * 110.73820 * 279.03805 * 14 13 12 17 17 C 1.54614 * 102.83925 * 37.37633 * 14 13 12 18 18 H 1.09006 * 110.40916 * 97.08789 * 17 14 13 19 19 C 1.52996 * 110.32857 * 219.25578 * 17 14 13 20 20 N 1.46498 * 109.47059 * 182.07465 * 19 17 14 21 21 C 1.36943 * 119.99752 * 179.72430 * 20 19 17 22 22 H 1.08002 * 119.99793 * 0.27665 * 21 20 19 23 23 C 1.38811 * 120.00012 * 180.27737 * 21 20 19 24 24 N 1.31624 * 119.99698 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00072 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47159 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.47290 * 120.00044 * 25 23 21 28 28 H 1.48503 * 109.47163 * 240.00049 * 25 23 21 29 29 C 1.47485 * 127.03731 * 180.02562 * 12 10 9 30 30 H 1.09001 * 109.47432 * 270.19214 * 1 2 3 31 31 H 1.09004 * 109.46620 * 30.18999 * 1 2 3 32 32 H 1.09002 * 109.47375 * 150.18657 * 1 2 3 33 33 H 1.09000 * 109.47449 * 180.02562 * 5 4 3 34 34 H 1.08999 * 109.46926 * 300.00455 * 6 5 4 35 35 H 1.09000 * 109.46965 * 59.99644 * 6 5 4 36 36 H 1.09000 * 109.47399 * 179.97438 * 6 5 4 37 37 H 1.09002 * 109.46994 * 60.00282 * 7 5 4 38 38 H 1.09000 * 109.47215 * 180.02562 * 7 5 4 39 39 H 1.09000 * 109.47222 * 300.00437 * 7 5 4 40 40 H 1.08990 * 110.66372 * 259.11514 * 13 12 10 41 41 H 1.08998 * 110.66272 * 22.07080 * 13 12 10 42 42 H 1.09003 * 109.46932 * 173.42133 * 16 14 13 43 43 H 1.08998 * 109.47475 * 293.42051 * 16 14 13 44 44 H 1.09004 * 109.46960 * 53.42175 * 16 14 13 45 45 H 1.09004 * 109.47066 * 62.07733 * 19 17 14 46 46 H 1.08994 * 109.46974 * 302.07880 * 19 17 14 47 47 H 0.97001 * 120.00384 * 0.02562 * 20 19 17 48 48 H 0.96999 * 119.99739 * 180.02562 * 24 23 21 49 49 H 1.08996 * 109.91158 * 86.11841 * 29 12 10 50 50 H 1.09001 * 110.07043 * 324.93101 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2981 1.0777 0.0000 4 6 3.5452 0.6897 -0.0058 5 6 4.7441 1.6027 -0.0140 6 6 4.7059 2.4834 -1.2646 7 6 4.7198 2.4877 1.2338 8 8 3.5889 -0.6462 -0.0037 9 6 2.3136 -1.0993 0.0042 10 6 1.8825 -2.5018 0.0095 11 8 0.6964 -2.7737 0.0160 12 7 2.8001 -3.4888 0.0071 13 6 4.2735 -3.3371 0.0002 14 6 4.7506 -4.4596 0.9559 15 1 5.7774 -4.7477 0.7306 16 6 4.6172 -4.0214 2.4157 17 6 3.7753 -5.6171 0.6403 18 1 4.2273 -6.3130 -0.0665 19 6 3.3830 -6.3471 1.9264 20 7 2.4991 -7.4691 1.6007 21 6 2.0210 -8.2760 2.5986 22 1 2.2920 -8.0825 3.6260 23 6 1.1881 -9.3426 2.2895 24 7 0.8584 -9.5787 1.0373 25 14 0.5354 -10.4428 3.6506 26 1 1.0494 -9.9679 4.9603 27 1 -0.9490 -10.3964 3.6557 28 1 0.9862 -11.8385 3.4180 29 6 2.5427 -4.9411 0.0111 30 1 -0.3634 0.0034 1.0276 31 1 -0.3633 0.8883 -0.5168 32 1 -0.3634 -0.8916 -0.5109 33 1 5.6558 1.0054 -0.0180 34 1 4.7231 1.8530 -2.1536 35 1 3.7942 3.0808 -1.2605 36 1 5.5728 3.1442 -1.2703 37 1 4.7470 1.8603 2.1248 38 1 5.5866 3.1484 1.2276 39 1 3.8080 3.0851 1.2379 40 1 4.6713 -3.4910 -1.0027 41 1 4.5610 -2.3569 0.3805 42 1 4.8461 -4.8627 3.0699 43 1 5.3126 -3.2061 2.6154 44 1 3.5978 -3.6832 2.6018 45 1 2.8642 -5.6572 2.5920 46 1 4.2799 -6.7222 2.4192 47 1 2.2560 -7.6432 0.6780 48 1 0.2761 -10.3238 0.8214 49 1 2.4049 -5.2964 -1.0100 50 1 1.6551 -5.1620 0.6040 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325577468.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:26 Heat of formation + Delta-G solvation = -9.169822 kcal Electronic energy + Delta-G solvation = -29852.328822 eV Core-core repulsion = 25881.310550 eV Total energy + Delta-G solvation = -3971.018273 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.66669 -40.09205 -38.07687 -36.27563 -35.41160 -34.60742 -32.78199 -31.28780 -31.09060 -29.30178 -27.99596 -27.67655 -26.73787 -25.40019 -24.41373 -23.18833 -21.99388 -21.64575 -20.72866 -19.99566 -19.08224 -17.70694 -17.21152 -16.90066 -16.56230 -16.12384 -15.81760 -14.98122 -14.85846 -14.68217 -14.26283 -13.87121 -13.64798 -13.60328 -13.40233 -13.36585 -13.31122 -13.00298 -12.74361 -12.65960 -12.51226 -12.18746 -12.14089 -11.93764 -11.79860 -11.77512 -11.66843 -11.55887 -11.13630 -11.05120 -10.95106 -10.83932 -10.57992 -10.46634 -10.23993 -10.10879 -9.92434 -9.67381 -9.07325 -8.86741 -8.59027 -6.91166 -5.75199 -3.04029 0.66455 2.11919 2.20718 2.91931 3.04409 3.44870 3.50391 3.52663 3.56128 4.25090 4.40254 4.51324 4.51741 4.57764 4.61517 4.64248 4.84437 4.93103 5.10682 5.16178 5.21128 5.31761 5.33886 5.37533 5.41373 5.45052 5.51912 5.55527 5.56482 5.60140 5.68170 5.73686 5.75657 5.79720 5.81085 5.86403 5.99748 6.03249 6.11816 6.17801 6.24841 6.29672 6.38795 6.46712 6.70676 6.85840 7.32181 7.48668 7.71809 7.99297 8.43464 9.54767 10.11528 10.45916 11.47711 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019505 B = 0.002593 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.159394 B =10793.708503 C =11466.637344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.078 3.922 3 N -0.482 5.482 4 C 0.216 3.784 5 C 0.001 3.999 6 C -0.144 4.144 7 C -0.144 4.144 8 O -0.184 6.184 9 C -0.108 4.108 10 C 0.621 3.379 11 O -0.511 6.511 12 N -0.606 5.606 13 C 0.098 3.902 14 C -0.097 4.097 15 H 0.090 0.910 16 C -0.143 4.143 17 C -0.104 4.104 18 H 0.087 0.913 19 C 0.162 3.838 20 N -0.734 5.734 21 C -0.239 4.239 22 H 0.070 0.930 23 C -0.014 4.014 24 N -0.932 5.932 25 Si 0.906 3.094 26 H -0.281 1.281 27 H -0.291 1.291 28 H -0.292 1.292 29 C 0.113 3.887 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.060 0.940 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.087 0.913 42 H 0.068 0.932 43 H 0.049 0.951 44 H 0.056 0.944 45 H 0.025 0.975 46 H 0.023 0.977 47 H 0.383 0.617 48 H 0.255 0.745 49 H 0.069 0.931 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.799 25.316 -4.425 28.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.046 4.046 3 N -0.211 5.211 4 C 0.010 3.990 5 C -0.019 4.019 6 C -0.202 4.202 7 C -0.202 4.202 8 O -0.071 6.071 9 C -0.163 4.163 10 C 0.408 3.592 11 O -0.388 6.388 12 N -0.339 5.339 13 C -0.024 4.024 14 C -0.117 4.117 15 H 0.108 0.892 16 C -0.200 4.200 17 C -0.123 4.123 18 H 0.106 0.894 19 C 0.035 3.965 20 N -0.378 5.378 21 C -0.370 4.370 22 H 0.088 0.912 23 C -0.210 4.210 24 N -0.581 5.581 25 Si 0.738 3.262 26 H -0.206 1.206 27 H -0.218 1.218 28 H -0.219 1.219 29 C -0.008 4.008 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.114 0.886 33 H 0.118 0.882 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.105 0.895 42 H 0.087 0.913 43 H 0.068 0.932 44 H 0.075 0.925 45 H 0.042 0.958 46 H 0.040 0.960 47 H 0.217 0.783 48 H 0.064 0.936 49 H 0.087 0.913 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 10.917 25.737 -4.252 28.278 hybrid contribution -0.143 -1.521 0.354 1.568 sum 10.774 24.216 -3.898 26.790 Atomic orbital electron populations 1.20391 0.85253 1.04319 1.03807 1.22051 0.98327 0.86309 0.97883 1.70256 1.00272 1.31006 1.19607 1.26573 0.95660 0.79546 0.97191 1.19755 0.90406 0.93154 0.98537 1.21850 1.03539 0.99403 0.95369 1.21851 1.03530 0.99386 0.95441 1.84545 1.29760 1.23311 1.69503 1.22921 0.81156 0.96061 1.16131 1.15889 0.84894 0.80638 0.77778 1.90898 1.15163 1.81427 1.51334 1.48645 1.06863 1.07091 1.71261 1.22831 0.79535 1.00184 0.99897 1.22246 0.99450 0.94376 0.95584 0.89221 1.21811 1.01739 1.01227 0.95242 1.22366 0.94276 0.96154 0.99543 0.89422 1.20794 0.93477 0.89558 0.92711 1.42406 1.56434 1.31420 1.07522 1.19242 1.22889 1.05976 0.88868 0.91196 1.24740 1.00683 0.99279 0.96261 1.69667 1.40432 1.31883 1.16108 0.86125 0.78532 0.80510 0.81074 1.20595 1.21843 1.21889 1.22253 1.00229 0.76775 1.01553 0.89963 0.90565 0.88568 0.88190 0.92153 0.91062 0.90775 0.92092 0.90775 0.91059 0.90739 0.89500 0.91259 0.93218 0.92534 0.95774 0.95956 0.78310 0.93554 0.91295 0.88687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.96 9.87 36.00 0.36 -0.61 16 2 C 0.08 1.07 7.16 -82.47 -0.59 0.48 16 3 N -0.48 -6.03 11.26 -7.07 -0.08 -6.11 16 4 C 0.22 2.32 6.82 -12.80 -0.09 2.23 16 5 C 0.00 0.01 3.39 -91.77 -0.31 -0.30 16 6 C -0.14 -0.80 9.18 37.16 0.34 -0.46 16 7 C -0.14 -0.82 9.17 37.16 0.34 -0.48 16 8 O -0.18 -2.25 7.93 4.44 0.04 -2.21 16 9 C -0.11 -1.55 6.99 -36.84 -0.26 -1.80 16 10 C 0.62 10.17 7.86 -12.84 -0.10 10.07 16 11 O -0.51 -9.77 15.14 5.20 0.08 -9.69 16 12 N -0.61 -9.13 3.19 -171.28 -0.55 -9.67 16 13 C 0.10 1.15 6.18 -2.12 -0.01 1.14 16 14 C -0.10 -1.16 3.60 -88.74 -0.32 -1.48 16 15 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 16 C -0.14 -1.77 7.99 37.16 0.30 -1.47 16 17 C -0.10 -1.61 3.00 -89.24 -0.27 -1.87 16 18 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 19 C 0.16 3.18 4.18 -4.04 -0.02 3.16 16 20 N -0.73 -18.42 5.33 -59.91 -0.32 -18.74 16 21 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 22 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 23 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 24 N -0.93 -28.42 13.06 55.49 0.72 -27.70 16 25 Si 0.91 22.71 29.55 -169.99 -5.02 17.68 16 26 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 28 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 29 C 0.11 1.89 6.31 -2.97 -0.02 1.87 16 30 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.10 1.27 6.48 -51.93 -0.34 0.93 16 33 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.09 0.95 5.43 -51.93 -0.28 0.67 16 42 H 0.07 0.89 6.67 -51.93 -0.35 0.54 16 43 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.06 0.81 7.61 -51.93 -0.40 0.42 16 45 H 0.02 0.50 6.85 -51.93 -0.36 0.15 16 46 H 0.02 0.44 7.55 -51.93 -0.39 0.05 16 47 H 0.38 10.09 7.51 -40.82 -0.31 9.78 16 48 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 49 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 50 H 0.09 1.93 7.48 -51.93 -0.39 1.54 16 LS Contribution 399.67 15.07 6.02 6.02 Total: -1.00 -33.46 399.67 -8.27 -41.73 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -8.27 Total: 5.57 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: -0.90 Total: 3.10 kcal Atomic # 7 Polarization: -62.00 SS G_CDS: -0.22 Total: -62.22 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.11 Total: -11.90 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.46 -8.27 -41.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325577468.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.563 kcal (2) G-P(sol) polarization free energy of solvation -33.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds