Wall clock time and date at job start Tue Mar 31 2020 19:02:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 O 1.34258 * 126.52229 * 2 1
4 4 C 1.34053 * 108.22630 * 180.02562 * 3 2 1
5 5 C 1.50699 * 125.38011 * 180.02562 * 4 3 2
6 6 C 1.53009 * 109.46908 * 299.98140 * 5 4 3
7 7 C 1.53002 * 109.47060 * 59.97989 * 5 4 3
8 8 N 1.29940 * 109.24298 * 359.72720 * 4 3 2
9 9 C 1.36073 * 108.47212 * 0.43838 * 8 4 3
10 10 C 1.47425 * 126.44405 * 179.82694 * 9 8 4
11 11 O 1.21605 * 119.99999 * 179.69197 * 10 9 8
12 12 N 1.34779 * 119.99960 * 359.68881 * 10 9 8
13 13 C 1.47025 * 125.64744 * 0.03827 * 12 10 9
14 14 C 1.54325 * 107.26722 * 181.02504 * 13 12 10
15 15 C 1.55158 * 102.94392 * 22.19606 * 14 13 12
16 16 H 1.08998 * 111.03652 * 82.58706 * 15 14 13
17 17 C 1.52996 * 111.00281 * 206.42263 * 15 14 13
18 18 C 1.52998 * 109.46929 * 178.65123 * 17 15 14
19 19 N 1.46506 * 109.47237 * 179.97438 * 18 17 15
20 20 C 1.36939 * 120.00073 * 179.72302 * 19 18 17
21 21 H 1.08004 * 119.99859 * 0.02562 * 20 19 18
22 22 C 1.38805 * 119.99849 * 180.02562 * 20 19 18
23 23 N 1.31625 * 120.00056 * 179.97438 * 22 20 19
24 24 Si 1.86801 * 120.00155 * 359.97438 * 22 20 19
25 25 H 1.48501 * 109.46896 * 90.00225 * 24 22 20
26 26 H 1.48501 * 109.47275 * 210.00265 * 24 22 20
27 27 H 1.48499 * 109.47039 * 330.00065 * 24 22 20
28 28 C 1.47416 * 125.64852 * 180.02562 * 12 10 9
29 29 H 1.09001 * 109.47123 * 269.97347 * 1 2 3
30 30 H 1.08997 * 109.46821 * 29.97620 * 1 2 3
31 31 H 1.08999 * 109.46632 * 149.97740 * 1 2 3
32 32 H 1.09000 * 109.47525 * 179.97438 * 5 4 3
33 33 H 1.09003 * 109.46692 * 179.97438 * 6 5 4
34 34 H 1.08995 * 109.46849 * 299.99774 * 6 5 4
35 35 H 1.09000 * 109.46918 * 59.99762 * 6 5 4
36 36 H 1.08988 * 109.47161 * 59.99786 * 7 5 4
37 37 H 1.09003 * 109.46773 * 180.02562 * 7 5 4
38 38 H 1.09000 * 109.46894 * 299.99769 * 7 5 4
39 39 H 1.08999 * 109.88668 * 300.44230 * 13 12 10
40 40 H 1.08997 * 109.88125 * 61.45556 * 13 12 10
41 41 H 1.09000 * 110.72241 * 263.82659 * 14 13 12
42 42 H 1.09003 * 110.72024 * 140.55779 * 14 13 12
43 43 H 1.09000 * 109.47441 * 58.65212 * 17 15 14
44 44 H 1.09002 * 109.47087 * 298.64658 * 17 15 14
45 45 H 1.09001 * 109.47671 * 60.00109 * 18 17 15
46 46 H 1.08998 * 109.47454 * 300.00107 * 18 17 15
47 47 H 0.97005 * 119.99811 * 0.02562 * 19 18 17
48 48 H 0.97000 * 119.99835 * 179.97438 * 23 22 20
49 49 H 1.09001 * 110.36817 * 37.06235 * 28 12 10
50 50 H 1.09001 * 110.45891 * 274.79101 * 28 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 8 2.3060 1.0789 0.0000
4 6 3.5788 0.6581 -0.0006
5 6 4.7929 1.5508 -0.0002
6 6 4.7765 2.4345 -1.2492
7 6 4.7766 2.4335 1.2494
8 7 3.6003 -0.6411 0.0049
9 6 2.3170 -1.0936 -0.0007
10 6 1.8854 -2.5032 -0.0009
11 8 0.7004 -2.7763 -0.0006
12 7 2.8042 -3.4893 -0.0016
13 6 4.2624 -3.3017 -0.0013
14 6 4.9047 -4.7047 -0.0287
15 6 3.7750 -5.5928 -0.6140
16 1 3.7566 -5.5356 -1.7023
17 6 3.9191 -7.0423 -0.1463
18 6 2.7709 -7.8783 -0.7153
19 7 2.9091 -9.2665 -0.2679
20 6 1.9870 -10.2040 -0.6501
21 1 1.1582 -9.9202 -1.2816
22 6 2.1177 -11.5192 -0.2257
23 7 1.2312 -12.4202 -0.5926
24 14 3.5517 -12.0102 0.8660
25 1 3.1664 -11.8500 2.2912
26 1 3.9088 -13.4281 0.6062
27 1 4.7200 -11.1431 0.5685
28 6 2.5134 -4.9345 -0.0025
29 1 -0.3633 -0.0005 1.0277
30 1 -0.3633 0.8902 -0.5135
31 1 -0.3632 -0.8898 -0.5142
32 1 5.6944 0.9381 -0.0004
33 1 5.6545 3.0805 -1.2487
34 1 4.7882 1.8057 -2.1393
35 1 3.8750 3.0472 -1.2489
36 1 4.7882 1.8040 2.1390
37 1 5.6546 3.0794 1.2494
38 1 3.8751 3.0462 1.2496
39 1 4.5640 -2.7387 -0.8845
40 1 4.5675 -2.7693 0.8995
41 1 5.1671 -5.0284 0.9785
42 1 5.7797 -4.7156 -0.6786
43 1 3.8890 -7.0774 0.9428
44 1 4.8696 -7.4445 -0.4967
45 1 2.8009 -7.8433 -1.8043
46 1 1.8203 -7.4762 -0.3650
47 1 3.6513 -9.5206 0.3026
48 1 1.3227 -13.3394 -0.2964
49 1 1.6391 -5.1452 -0.6184
50 1 2.3547 -5.2918 1.0150
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001326273095.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:02:52
Heat of formation + Delta-G solvation = -13.428655 kcal
Electronic energy + Delta-G solvation = -28768.012518 eV
Core-core repulsion = 24796.809568 eV
Total energy + Delta-G solvation = -3971.202950 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.200 amu
Computer time = 1.00 seconds
Orbital eigenvalues (eV)
-43.80457 -40.04846 -37.88570 -36.28096 -35.35417 -35.01950 -32.92814 -32.29591
-31.19782 -29.69341 -28.18607 -27.80300 -26.98565 -24.92293 -23.63436 -22.81384
-22.60589 -21.27688 -21.16607 -20.13583 -19.27876 -17.66624 -17.52971 -17.30106
-16.54298 -16.28322 -15.59685 -15.47188 -14.94849 -14.69546 -14.52060 -14.01552
-13.92469 -13.82831 -13.81802 -13.30830 -13.27971 -13.05521 -12.85820 -12.78934
-12.77852 -12.61425 -12.27770 -12.15437 -11.92024 -11.81057 -11.64937 -11.62589
-11.53565 -11.19750 -11.00451 -10.86193 -10.63926 -10.49034 -10.29863 -10.18877
-10.05547 -9.54821 -9.16194 -8.85054 -8.64956 -7.18694 -5.72624 -3.07998
0.79185 1.70728 2.09786 2.78810 3.10982 3.39410 3.40080 3.42688
3.47661 4.16471 4.19682 4.40658 4.41537 4.54845 4.59261 4.62720
4.70238 4.80475 4.87473 5.01093 5.01634 5.14100 5.19311 5.20416
5.22490 5.31672 5.34760 5.40563 5.53697 5.55336 5.57537 5.60208
5.63177 5.67006 5.72730 5.73909 5.83890 5.86677 5.90257 6.00635
6.07145 6.17741 6.22982 6.35528 6.77970 6.81356 7.15208 7.39038
7.98279 8.04417 8.46498 9.25850 9.98151 10.18115 11.45890
Molecular weight = 335.20amu
Principal moments of inertia in cm(-1)
A = 0.023083 B = 0.002045 C = 0.001928
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1212.699944 B =13685.725537 C =14518.854084
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.077 4.077
2 C 0.040 3.960
3 O -0.194 6.194
4 C 0.196 3.804
5 C 0.004 3.996
6 C -0.151 4.151
7 C -0.151 4.151
8 N -0.453 5.453
9 C -0.071 4.071
10 C 0.614 3.386
11 O -0.535 6.535
12 N -0.602 5.602
13 C 0.115 3.885
14 C -0.131 4.131
15 C -0.094 4.094
16 H 0.087 0.913
17 C -0.118 4.118
18 C 0.154 3.846
19 N -0.758 5.758
20 C -0.243 4.243
21 H 0.090 0.910
22 C 0.002 3.998
23 N -0.935 5.935
24 Si 0.886 3.114
25 H -0.284 1.284
26 H -0.291 1.291
27 H -0.277 1.277
28 C 0.110 3.890
29 H 0.092 0.908
30 H 0.080 0.920
31 H 0.114 0.886
32 H 0.115 0.885
33 H 0.074 0.926
34 H 0.063 0.937
35 H 0.063 0.937
36 H 0.062 0.938
37 H 0.074 0.926
38 H 0.063 0.937
39 H 0.072 0.928
40 H 0.071 0.929
41 H 0.077 0.923
42 H 0.082 0.918
43 H 0.065 0.935
44 H 0.068 0.932
45 H 0.026 0.974
46 H 0.028 0.972
47 H 0.360 0.640
48 H 0.259 0.741
49 H 0.084 0.916
50 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.344 35.635 1.866 36.887
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C -0.016 4.016
3 O -0.081 6.081
4 C -0.013 4.013
5 C -0.016 4.016
6 C -0.208 4.208
7 C -0.208 4.208
8 N -0.182 5.182
9 C -0.191 4.191
10 C 0.401 3.599
11 O -0.412 6.412
12 N -0.334 5.334
13 C -0.008 4.008
14 C -0.169 4.169
15 C -0.114 4.114
16 H 0.105 0.895
17 C -0.156 4.156
18 C 0.027 3.973
19 N -0.403 5.403
20 C -0.373 4.373
21 H 0.108 0.892
22 C -0.194 4.194
23 N -0.583 5.583
24 Si 0.716 3.284
25 H -0.211 1.211
26 H -0.218 1.218
27 H -0.203 1.203
28 C -0.011 4.011
29 H 0.110 0.890
30 H 0.099 0.901
31 H 0.132 0.868
32 H 0.133 0.867
33 H 0.093 0.907
34 H 0.082 0.918
35 H 0.082 0.918
36 H 0.081 0.919
37 H 0.093 0.907
38 H 0.082 0.918
39 H 0.091 0.909
40 H 0.089 0.911
41 H 0.096 0.904
42 H 0.101 0.899
43 H 0.084 0.916
44 H 0.087 0.913
45 H 0.044 0.956
46 H 0.046 0.954
47 H 0.193 0.807
48 H 0.069 0.931
49 H 0.103 0.897
50 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges 8.996 35.073 1.761 36.251
hybrid contribution 0.501 -0.122 0.802 0.954
sum 9.497 34.951 2.563 36.309
Atomic orbital electron populations
1.20614 0.82448 1.05471 1.04762 1.23745 0.95114 0.83244 0.99534
1.84293 1.17953 1.36194 1.69678 1.26220 0.84056 0.90217 1.00821
1.19779 0.89800 0.94281 0.97696 1.21904 1.03232 0.99537 0.96172
1.21903 1.03236 0.99544 0.96164 1.70875 1.21517 1.08623 1.17147
1.21399 0.88872 0.95341 1.13465 1.16287 0.84603 0.81984 0.76980
1.90804 1.15758 1.82961 1.51711 1.48231 1.07159 1.06510 1.71529
1.22044 0.78928 0.97165 1.02649 1.22790 0.98223 0.93667 1.02249
1.22323 0.93562 0.94769 1.00725 0.89505 1.21732 1.00347 0.92544
1.01020 1.20673 0.95229 0.84545 0.96819 1.42723 1.31077 1.05127
1.61385 1.19084 1.03894 0.88423 1.25861 0.89224 1.24692 0.98280
0.95877 1.00548 1.69711 1.36493 1.02390 1.49733 0.86517 0.83135
0.77597 0.81108 1.21107 1.21763 1.20346 1.22445 0.98988 0.77838
1.01859 0.88960 0.90142 0.86802 0.86702 0.90699 0.91834 0.91812
0.91866 0.90696 0.91814 0.90929 0.91055 0.90438 0.89946 0.91633
0.91306 0.95585 0.95376 0.80733 0.93113 0.89716 0.90744
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.64 9.88 36.01 0.36 -0.28 16
2 C 0.04 0.44 7.44 -35.08 -0.26 0.17 16
3 O -0.19 -1.91 10.73 6.50 0.07 -1.84 16
4 C 0.20 1.80 6.81 -13.08 -0.09 1.72 16
5 C 0.00 0.02 3.39 -91.77 -0.31 -0.29 16
6 C -0.15 -0.64 9.18 37.16 0.34 -0.30 16
7 C -0.15 -0.64 9.18 37.16 0.34 -0.30 16
8 N -0.45 -5.13 8.83 -7.65 -0.07 -5.20 16
9 C -0.07 -0.90 6.83 -83.02 -0.57 -1.47 16
10 C 0.61 8.97 7.85 -12.52 -0.10 8.87 16
11 O -0.53 -8.91 15.06 5.27 0.08 -8.83 16
12 N -0.60 -8.09 3.33 -171.80 -0.57 -8.66 16
13 C 0.11 1.25 5.53 -3.06 -0.02 1.24 16
14 C -0.13 -1.31 6.42 -24.90 -0.16 -1.47 16
15 C -0.09 -1.15 3.07 -88.48 -0.27 -1.43 16
16 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16
17 C -0.12 -1.73 4.84 -26.73 -0.13 -1.86 16
18 C 0.15 3.01 6.11 -4.04 -0.02 2.98 16
19 N -0.76 -18.48 5.41 -59.91 -0.32 -18.80 16
20 C -0.24 -7.08 10.47 -15.06 -0.16 -7.24 16
21 H 0.09 2.80 8.06 -52.48 -0.42 2.38 16
22 C 0.00 0.05 5.50 -17.43 -0.10 -0.05 16
23 N -0.94 -29.99 13.97 55.49 0.78 -29.22 16
24 Si 0.89 22.48 27.73 -169.99 -4.71 17.77 16
25 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16
26 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16
27 H -0.28 -6.58 6.52 56.52 0.37 -6.21 16
28 C 0.11 1.51 5.57 -2.55 -0.01 1.50 16
29 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16
30 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16
31 H 0.11 1.12 6.48 -51.93 -0.34 0.79 16
32 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16
33 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16
34 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16
35 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16
36 H 0.06 0.31 8.14 -51.94 -0.42 -0.11 16
37 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16
38 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16
39 H 0.07 0.79 7.64 -51.93 -0.40 0.39 16
40 H 0.07 0.77 7.74 -51.93 -0.40 0.37 16
41 H 0.08 0.74 8.04 -51.93 -0.42 0.33 16
42 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16
43 H 0.06 0.95 8.10 -51.93 -0.42 0.53 16
44 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16
45 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16
46 H 0.03 0.56 7.46 -51.93 -0.39 0.18 16
47 H 0.36 8.48 5.53 -40.82 -0.23 8.25 16
48 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16
49 H 0.08 1.27 7.96 -51.93 -0.41 0.86 16
50 H 0.07 1.05 8.00 -51.93 -0.42 0.63 16
LS Contribution 403.01 15.07 6.07 6.07
Total: -1.00 -35.31 403.01 -8.34 -43.65
By element:
Atomic # 1 Polarization: 11.75 SS G_CDS: -8.50 Total: 3.25 kcal
Atomic # 6 Polarization: 2.96 SS G_CDS: -1.16 Total: 1.80 kcal
Atomic # 7 Polarization: -61.69 SS G_CDS: -0.19 Total: -61.87 kcal
Atomic # 8 Polarization: -10.82 SS G_CDS: 0.15 Total: -10.67 kcal
Atomic # 14 Polarization: 22.48 SS G_CDS: -4.71 Total: 17.77 kcal
Total LS contribution 6.07 Total: 6.07 kcal
Total: -35.31 -8.34 -43.65 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001326273095.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 30.226 kcal
(2) G-P(sol) polarization free energy of solvation -35.314 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.088 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.340 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.655 kcal
(6) G-S(sol) free energy of system = (1) + (5) -13.429 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.00 seconds