Wall clock time and date at job start Tue Mar 31 2020 19:02:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 O 1.34258 * 126.52229 * 2 1
4 4 C 1.34053 * 108.22630 * 180.02562 * 3 2 1
5 5 C 1.50699 * 125.38011 * 180.02562 * 4 3 2
6 6 C 1.53009 * 109.46908 * 299.98140 * 5 4 3
7 7 C 1.53002 * 109.47060 * 59.97989 * 5 4 3
8 8 N 1.29940 * 109.24298 * 359.72720 * 4 3 2
9 9 C 1.36073 * 108.47212 * 0.43838 * 8 4 3
10 10 C 1.47425 * 126.44405 * 179.82694 * 9 8 4
11 11 O 1.21605 * 119.99999 * 179.69197 * 10 9 8
12 12 N 1.34779 * 119.99960 * 359.68881 * 10 9 8
13 13 C 1.47025 * 125.64744 * 0.03827 * 12 10 9
14 14 C 1.54325 * 107.26722 * 181.02504 * 13 12 10
15 15 C 1.55158 * 102.94392 * 22.19606 * 14 13 12
16 16 H 1.08998 * 111.03652 * 82.58706 * 15 14 13
17 17 C 1.52996 * 111.00281 * 206.42263 * 15 14 13
18 18 C 1.52998 * 109.46929 * 178.65123 * 17 15 14
19 19 N 1.46506 * 109.47237 * 179.97438 * 18 17 15
20 20 C 1.36939 * 120.00073 * 179.72302 * 19 18 17
21 21 H 1.08004 * 119.99859 * 0.02562 * 20 19 18
22 22 C 1.38805 * 119.99849 * 180.02562 * 20 19 18
23 23 N 1.31625 * 120.00056 * 179.97438 * 22 20 19
24 24 Si 1.86801 * 120.00155 * 359.97438 * 22 20 19
25 25 H 1.48501 * 109.46896 * 90.00225 * 24 22 20
26 26 H 1.48501 * 109.47275 * 210.00265 * 24 22 20
27 27 H 1.48499 * 109.47039 * 330.00065 * 24 22 20
28 28 C 1.47416 * 125.64852 * 180.02562 * 12 10 9
29 29 H 1.09001 * 109.47123 * 269.97347 * 1 2 3
30 30 H 1.08997 * 109.46821 * 29.97620 * 1 2 3
31 31 H 1.08999 * 109.46632 * 149.97740 * 1 2 3
32 32 H 1.09000 * 109.47525 * 179.97438 * 5 4 3
33 33 H 1.09003 * 109.46692 * 179.97438 * 6 5 4
34 34 H 1.08995 * 109.46849 * 299.99774 * 6 5 4
35 35 H 1.09000 * 109.46918 * 59.99762 * 6 5 4
36 36 H 1.08988 * 109.47161 * 59.99786 * 7 5 4
37 37 H 1.09003 * 109.46773 * 180.02562 * 7 5 4
38 38 H 1.09000 * 109.46894 * 299.99769 * 7 5 4
39 39 H 1.08999 * 109.88668 * 300.44230 * 13 12 10
40 40 H 1.08997 * 109.88125 * 61.45556 * 13 12 10
41 41 H 1.09000 * 110.72241 * 263.82659 * 14 13 12
42 42 H 1.09003 * 110.72024 * 140.55779 * 14 13 12
43 43 H 1.09000 * 109.47441 * 58.65212 * 17 15 14
44 44 H 1.09002 * 109.47087 * 298.64658 * 17 15 14
45 45 H 1.09001 * 109.47671 * 60.00109 * 18 17 15
46 46 H 1.08998 * 109.47454 * 300.00107 * 18 17 15
47 47 H 0.97005 * 119.99811 * 0.02562 * 19 18 17
48 48 H 0.97000 * 119.99835 * 179.97438 * 23 22 20
49 49 H 1.09001 * 110.36817 * 37.06235 * 28 12 10
50 50 H 1.09001 * 110.45891 * 274.79101 * 28 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 8 2.3060 1.0789 0.0000
4 6 3.5788 0.6581 -0.0006
5 6 4.7929 1.5508 -0.0002
6 6 4.7765 2.4345 -1.2492
7 6 4.7766 2.4335 1.2494
8 7 3.6003 -0.6411 0.0049
9 6 2.3170 -1.0936 -0.0007
10 6 1.8854 -2.5032 -0.0009
11 8 0.7004 -2.7763 -0.0006
12 7 2.8042 -3.4893 -0.0016
13 6 4.2624 -3.3017 -0.0013
14 6 4.9047 -4.7047 -0.0287
15 6 3.7750 -5.5928 -0.6140
16 1 3.7566 -5.5356 -1.7023
17 6 3.9191 -7.0423 -0.1463
18 6 2.7709 -7.8783 -0.7153
19 7 2.9091 -9.2665 -0.2679
20 6 1.9870 -10.2040 -0.6501
21 1 1.1582 -9.9202 -1.2816
22 6 2.1177 -11.5192 -0.2257
23 7 1.2312 -12.4202 -0.5926
24 14 3.5517 -12.0102 0.8660
25 1 3.1664 -11.8500 2.2912
26 1 3.9088 -13.4281 0.6062
27 1 4.7200 -11.1431 0.5685
28 6 2.5134 -4.9345 -0.0025
29 1 -0.3633 -0.0005 1.0277
30 1 -0.3633 0.8902 -0.5135
31 1 -0.3632 -0.8898 -0.5142
32 1 5.6944 0.9381 -0.0004
33 1 5.6545 3.0805 -1.2487
34 1 4.7882 1.8057 -2.1393
35 1 3.8750 3.0472 -1.2489
36 1 4.7882 1.8040 2.1390
37 1 5.6546 3.0794 1.2494
38 1 3.8751 3.0462 1.2496
39 1 4.5640 -2.7387 -0.8845
40 1 4.5675 -2.7693 0.8995
41 1 5.1671 -5.0284 0.9785
42 1 5.7797 -4.7156 -0.6786
43 1 3.8890 -7.0774 0.9428
44 1 4.8696 -7.4445 -0.4967
45 1 2.8009 -7.8433 -1.8043
46 1 1.8203 -7.4762 -0.3650
47 1 3.6513 -9.5206 0.3026
48 1 1.3227 -13.3394 -0.2964
49 1 1.6391 -5.1452 -0.6184
50 1 2.3547 -5.2918 1.0150
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001326273095.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:02:51
Heat of formation + Delta-G solvation = -37.695108 kcal
Electronic energy + Delta-G solvation = -28769.064790 eV
Core-core repulsion = 24796.809568 eV
Total energy + Delta-G solvation = -3972.255222 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.200 amu
Computer time = 1.41 seconds
Orbital eigenvalues (eV)
-44.59399 -41.10587 -39.00061 -37.03710 -36.73781 -35.90939 -34.51551 -33.05921
-32.97264 -30.91195 -29.27885 -28.10996 -28.05704 -26.15703 -24.83281 -23.97723
-23.44708 -22.72547 -22.02548 -21.24988 -20.14224 -19.62944 -18.62316 -18.11331
-17.37598 -17.23559 -16.61558 -16.51000 -16.17882 -16.00058 -15.74180 -15.21748
-15.10827 -14.81950 -14.64224 -14.37349 -14.33303 -14.15854 -13.88885 -13.76850
-13.65173 -13.55696 -13.15262 -13.07139 -13.05884 -12.88320 -12.60224 -12.50755
-12.37262 -12.15259 -12.06884 -12.01633 -11.98968 -11.83485 -11.73773 -11.56702
-11.43422 -11.26638 -10.96546 -10.04678 -9.64614 -9.30878 -8.03504 -5.37981
-0.06856 0.88252 1.35307 1.37780 1.42963 1.50387 1.80668 2.08735
2.48770 2.68116 3.27159 3.28850 3.49008 3.52911 3.65667 3.71567
3.89936 3.99184 4.04921 4.12321 4.22022 4.27716 4.31103 4.37975
4.45728 4.49849 4.51791 4.62171 4.71862 4.75408 4.75930 4.83506
4.84851 4.90033 4.91476 4.93623 4.97445 5.03678 5.07015 5.12446
5.17247 5.27986 5.30011 5.31343 5.35022 5.44348 5.74347 6.20441
6.27374 6.42665 6.90565 7.07313 7.82795 8.03783 9.18138
Molecular weight = 335.20amu
Principal moments of inertia in cm(-1)
A = 0.023083 B = 0.002045 C = 0.001928
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1212.699944 B =13685.725537 C =14518.854084
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.075 4.075
2 C 0.043 3.957
3 O -0.192 6.192
4 C 0.203 3.797
5 C 0.004 3.996
6 C -0.147 4.147
7 C -0.147 4.147
8 N -0.469 5.469
9 C -0.100 4.100
10 C 0.605 3.395
11 O -0.568 6.568
12 N -0.605 5.605
13 C 0.118 3.882
14 C -0.118 4.118
15 C -0.085 4.085
16 H 0.088 0.912
17 C -0.103 4.103
18 C 0.149 3.851
19 N -0.759 5.759
20 C -0.240 4.240
21 H 0.050 0.950
22 C -0.069 4.069
23 N -0.985 5.985
24 Si 0.963 3.037
25 H -0.277 1.277
26 H -0.294 1.294
27 H -0.246 1.246
28 C 0.108 3.892
29 H 0.103 0.897
30 H 0.107 0.893
31 H 0.095 0.905
32 H 0.126 0.874
33 H 0.098 0.902
34 H 0.054 0.946
35 H 0.059 0.941
36 H 0.054 0.946
37 H 0.098 0.902
38 H 0.059 0.941
39 H 0.075 0.925
40 H 0.075 0.925
41 H 0.088 0.912
42 H 0.107 0.893
43 H 0.073 0.927
44 H 0.084 0.916
45 H 0.021 0.979
46 H 0.018 0.982
47 H 0.368 0.632
48 H 0.258 0.742
49 H 0.061 0.939
50 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.818 38.003 2.892 40.211
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C -0.014 4.014
3 O -0.080 6.080
4 C -0.006 4.006
5 C -0.016 4.016
6 C -0.205 4.205
7 C -0.205 4.205
8 N -0.198 5.198
9 C -0.218 4.218
10 C 0.394 3.606
11 O -0.449 6.449
12 N -0.336 5.336
13 C -0.004 4.004
14 C -0.156 4.156
15 C -0.105 4.105
16 H 0.107 0.893
17 C -0.141 4.141
18 C 0.023 3.977
19 N -0.405 5.405
20 C -0.371 4.371
21 H 0.068 0.932
22 C -0.260 4.260
23 N -0.636 5.636
24 Si 0.789 3.211
25 H -0.203 1.203
26 H -0.221 1.221
27 H -0.170 1.170
28 C -0.014 4.014
29 H 0.121 0.879
30 H 0.125 0.875
31 H 0.114 0.886
32 H 0.143 0.857
33 H 0.117 0.883
34 H 0.073 0.927
35 H 0.079 0.921
36 H 0.073 0.927
37 H 0.117 0.883
38 H 0.078 0.922
39 H 0.093 0.907
40 H 0.093 0.907
41 H 0.106 0.894
42 H 0.126 0.874
43 H 0.091 0.909
44 H 0.102 0.898
45 H 0.039 0.961
46 H 0.036 0.964
47 H 0.202 0.798
48 H 0.067 0.933
49 H 0.079 0.921
50 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges 12.515 37.488 2.782 39.620
hybrid contribution -0.672 -0.748 0.415 1.088
sum 11.843 36.740 3.197 38.734
Atomic orbital electron populations
1.20666 0.81076 1.05832 1.05518 1.24110 0.96029 0.83062 0.98210
1.84325 1.18260 1.35723 1.69672 1.27134 0.84661 0.90197 0.98638
1.20076 0.88297 0.94253 0.98938 1.21902 1.04231 0.99354 0.94991
1.21900 1.04232 0.99360 0.94977 1.70832 1.20817 1.09662 1.18455
1.21263 0.90097 0.94712 1.15752 1.16653 0.84405 0.83028 0.76523
1.90772 1.17074 1.83682 1.53350 1.48352 1.08275 1.06070 1.70913
1.22138 0.77286 0.98022 1.02913 1.22783 0.97761 0.91775 1.03237
1.22202 0.93841 0.93620 1.00789 0.89343 1.21588 0.98545 0.92751
1.01206 1.20857 0.97172 0.82954 0.96691 1.42711 1.30247 1.06110
1.61438 1.19049 1.03672 0.89697 1.24730 0.93155 1.25639 1.01875
0.95756 1.02770 1.69913 1.39133 1.02809 1.51726 0.85295 0.79936
0.77233 0.78638 1.20346 1.22115 1.16974 1.22394 0.99144 0.78636
1.01235 0.87903 0.87483 0.88621 0.85653 0.88320 0.92714 0.92150
0.92718 0.88319 0.92156 0.90703 0.90715 0.89351 0.87444 0.90863
0.89773 0.96098 0.96431 0.79826 0.93286 0.92063 0.91253
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -1.23 9.88 71.24 0.70 -0.53 16
2 C 0.04 0.92 7.44 25.19 0.19 1.11 16
3 O -0.19 -3.60 10.73 0.35 0.00 -3.60 16
4 C 0.20 3.49 6.81 88.39 0.60 4.09 16
5 C 0.00 0.03 3.39 -11.54 -0.04 -0.01 16
6 C -0.15 -0.89 9.18 71.99 0.66 -0.23 16
7 C -0.15 -0.89 9.18 71.98 0.66 -0.23 16
8 N -0.47 -10.27 8.83 -293.02 -2.59 -12.86 16
9 C -0.10 -2.55 6.83 40.41 0.28 -2.27 16
10 C 0.60 18.26 7.85 86.66 0.68 18.94 16
11 O -0.57 -20.02 15.06 -4.05 -0.06 -20.08 16
12 N -0.60 -16.28 3.33 -815.72 -2.71 -18.99 16
13 C 0.12 2.39 5.53 86.73 0.48 2.87 16
14 C -0.12 -1.98 6.42 31.78 0.20 -1.77 16
15 C -0.08 -1.94 3.07 -9.41 -0.03 -1.96 16
16 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16
17 C -0.10 -2.77 4.84 30.59 0.15 -2.62 16
18 C 0.15 5.77 6.11 86.38 0.53 6.30 16
19 N -0.76 -36.46 5.41 -343.44 -1.86 -38.32 16
20 C -0.24 -14.32 10.47 84.03 0.88 -13.44 16
21 H 0.05 3.31 8.06 -2.91 -0.02 3.29 16
22 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16
23 N -0.99 -64.89 13.97 21.65 0.30 -64.59 16
24 Si 0.96 45.97 27.73 68.60 1.90 47.88 16
25 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16
26 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16
27 H -0.25 -10.35 6.52 99.48 0.65 -9.70 16
28 C 0.11 2.99 5.57 86.85 0.48 3.47 16
29 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16
30 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16
31 H 0.10 1.99 6.48 -2.39 -0.02 1.97 16
32 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16
33 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16
34 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16
35 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16
36 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16
37 H 0.10 0.15 8.14 -2.39 -0.02 0.13 16
38 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16
39 H 0.07 1.50 7.64 -2.39 -0.02 1.48 16
40 H 0.07 1.49 7.74 -2.39 -0.02 1.47 16
41 H 0.09 1.35 8.04 -2.39 -0.02 1.33 16
42 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16
43 H 0.07 1.90 8.10 -2.39 -0.02 1.88 16
44 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16
45 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16
46 H 0.02 0.72 7.46 -2.39 -0.02 0.70 16
47 H 0.37 16.40 5.53 -92.70 -0.51 15.89 16
48 H 0.26 16.11 8.31 -92.71 -0.77 15.34 16
49 H 0.06 1.96 7.96 -2.39 -0.02 1.94 16
50 H 0.07 1.97 8.00 -2.39 -0.02 1.95 16
Total: -1.00 -79.39 403.01 2.24 -77.16
By element:
Atomic # 1 Polarization: 23.08 SS G_CDS: 0.36 Total: 23.44 kcal
Atomic # 6 Polarization: 3.08 SS G_CDS: 6.89 Total: 9.97 kcal
Atomic # 7 Polarization: -127.91 SS G_CDS: -6.86 Total: -134.77 kcal
Atomic # 8 Polarization: -23.62 SS G_CDS: -0.06 Total: -23.68 kcal
Atomic # 14 Polarization: 45.97 SS G_CDS: 1.90 Total: 47.88 kcal
Total: -79.39 2.24 -77.16 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001326273095.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 39.462 kcal
(2) G-P(sol) polarization free energy of solvation -79.393 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.932 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.237 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.157 kcal
(6) G-S(sol) free energy of system = (1) + (5) -37.695 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.41 seconds