Wall clock time and date at job start Tue Mar 31 2020 18:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50702 * 113.25423 * 2 1 4 4 N 1.30277 * 126.28425 * 192.64001 * 3 2 1 5 5 N 1.28659 * 109.37936 * 179.82826 * 4 3 2 6 6 C 1.30271 * 109.38696 * 0.44469 * 5 4 3 7 7 C 1.50699 * 126.28641 * 179.73047 * 6 5 4 8 8 C 1.53170 * 109.54263 * 59.55655 * 7 6 5 9 9 C 1.53095 * 109.16262 * 183.15328 * 8 7 6 10 10 O 1.42904 * 109.41555 * 57.60922 * 9 8 7 11 11 C 1.42897 * 114.09539 * 298.84113 * 10 9 8 12 12 C 1.53091 * 109.41715 * 61.15985 * 11 10 9 13 13 O 1.34365 * 126.27955 * 12.95403 * 3 2 1 14 14 C 1.53514 * 114.17354 * 132.95043 * 2 1 3 15 15 N 1.47481 * 87.93114 * 87.62333 * 14 2 1 16 16 C 1.46896 * 111.00014 * 138.70261 * 15 14 2 17 17 C 1.52997 * 109.47114 * 170.00294 * 16 15 14 18 18 C 1.53006 * 109.47127 * 180.02562 * 17 16 15 19 19 C 1.50698 * 109.47184 * 180.02562 * 18 17 16 20 20 H 1.08005 * 119.99819 * 359.97438 * 19 18 17 21 21 C 1.37875 * 120.00046 * 180.02562 * 19 18 17 22 22 N 1.31511 * 120.00192 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99979 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.47309 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47510 * 119.99847 * 23 21 19 26 26 H 1.48506 * 109.47246 * 239.99882 * 23 21 19 27 27 C 1.47486 * 87.83444 * 27.01026 * 15 14 2 28 28 H 1.08999 * 109.47324 * 287.04340 * 1 2 3 29 29 H 1.09001 * 109.47649 * 47.04838 * 1 2 3 30 30 H 1.08999 * 109.47018 * 167.04909 * 1 2 3 31 31 H 1.09002 * 109.54403 * 179.82611 * 7 6 5 32 32 H 1.08996 * 109.52440 * 303.05501 * 8 7 6 33 33 H 1.08995 * 109.52567 * 63.24837 * 8 7 6 34 34 H 1.09003 * 109.48126 * 297.62530 * 9 8 7 35 35 H 1.09007 * 109.47948 * 177.59126 * 9 8 7 36 36 H 1.09003 * 109.48466 * 301.17506 * 11 10 9 37 37 H 1.09004 * 109.48032 * 181.13975 * 11 10 9 38 38 H 1.09000 * 109.52238 * 182.48442 * 12 11 10 39 39 H 1.09004 * 109.57442 * 62.32287 * 12 11 10 40 40 H 1.08996 * 113.47400 * 332.86264 * 14 2 1 41 41 H 1.08998 * 113.53003 * 202.40124 * 14 2 1 42 42 H 1.08996 * 109.47194 * 50.00462 * 16 15 14 43 43 H 1.09001 * 109.47271 * 290.00025 * 16 15 14 44 44 H 1.09001 * 109.47502 * 60.00479 * 17 16 15 45 45 H 1.09001 * 109.47289 * 300.00275 * 17 16 15 46 46 H 1.09001 * 109.47002 * 299.99574 * 18 17 16 47 47 H 1.08993 * 109.46955 * 60.00011 * 18 17 16 48 48 H 0.96996 * 120.00505 * 179.97438 * 22 21 19 49 49 H 1.08998 * 113.47729 * 87.75610 * 27 15 14 50 50 H 1.09001 * 113.47597 * 218.21731 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1250 1.3846 0.0000 4 7 3.3708 1.6884 -0.2298 5 7 3.5207 2.9638 -0.1515 6 6 2.3776 3.5164 0.1402 7 6 2.1214 4.9895 0.3282 8 6 2.4828 5.7405 -0.9569 9 6 2.2942 7.2429 -0.7309 10 8 3.1037 7.6631 0.3693 11 6 2.7792 7.0289 1.6080 12 6 2.9872 5.5179 1.4760 13 8 1.4690 2.5318 0.2428 14 6 2.1586 -0.9543 1.0251 15 7 2.0811 -2.0161 0.0045 16 6 3.2986 -2.8379 0.0063 17 6 3.0852 -4.0675 -0.8788 18 6 4.3532 -4.9239 -0.8765 19 6 4.1432 -6.1347 -1.7488 20 1 3.1996 -6.2792 -2.2539 21 6 5.1553 -7.0584 -1.9011 22 7 6.3042 -6.8827 -1.2855 23 14 4.8948 -8.5596 -2.9817 24 1 3.5261 -8.5242 -3.5567 25 1 5.8939 -8.5581 -4.0804 26 1 5.0572 -9.7905 -2.1668 27 6 2.1585 -0.9588 -1.0208 28 1 -0.3634 0.3012 0.9825 29 1 -0.3634 0.7002 -0.7522 30 1 -0.3633 -1.0015 -0.2303 31 1 1.0688 5.1496 0.5619 32 1 3.5220 5.5389 -1.2166 33 1 1.8331 5.4097 -1.7671 34 1 1.2467 7.4488 -0.5110 35 1 2.5909 7.7856 -1.6286 36 1 1.7379 7.2319 1.8586 37 1 3.4251 7.4173 2.3954 38 1 2.6982 5.0279 2.4058 39 1 4.0365 5.3107 1.2659 40 1 1.5247 -1.1386 1.8924 41 1 3.1797 -0.6882 1.2982 42 1 3.5199 -3.1573 1.0246 43 1 4.1328 -2.2524 -0.3803 44 1 2.8640 -3.7482 -1.8973 45 1 2.2510 -4.6531 -0.4924 46 1 5.1876 -4.3385 -1.2628 47 1 4.5740 -5.2432 0.1420 48 1 7.0161 -7.5328 -1.3923 49 1 3.1797 -0.6932 -1.2945 50 1 1.5247 -1.1470 -1.8874 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327718635.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:04 Heat of formation + Delta-G solvation = 9.899069 kcal Electronic energy + Delta-G solvation = -28499.287239 eV Core-core repulsion = 24529.095855 eV Total energy + Delta-G solvation = -3970.191384 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.51336 -40.58818 -39.87803 -36.41141 -35.31169 -34.53402 -32.78580 -31.74505 -31.13861 -30.00032 -27.32247 -26.52804 -26.17198 -24.85239 -24.19195 -23.89190 -22.94620 -21.76911 -20.75351 -20.07710 -19.34274 -17.64835 -17.60762 -16.86150 -16.54009 -16.50763 -15.92503 -15.57078 -15.40912 -15.23026 -14.88676 -14.44537 -14.40554 -14.03894 -13.71839 -13.36902 -13.09351 -13.03186 -12.73147 -12.61317 -12.28315 -12.17794 -12.13321 -12.10097 -11.94280 -11.89164 -11.63341 -11.29362 -11.14532 -11.03279 -10.98323 -10.94859 -10.71870 -10.54833 -10.43395 -10.21087 -9.63428 -9.61957 -9.29819 -9.03943 -8.84048 -8.31910 -5.96788 -3.98760 0.84913 1.86212 2.12162 3.26394 3.33291 3.36335 3.40568 3.45092 3.83713 3.97673 4.01041 4.05224 4.22767 4.33962 4.34780 4.48846 4.55767 4.61615 4.74141 4.79451 4.90865 4.95323 5.07763 5.10475 5.16262 5.18359 5.21784 5.30790 5.35384 5.39072 5.41669 5.48834 5.49365 5.52759 5.57208 5.67514 5.70144 5.71703 5.90596 5.97215 6.23197 6.35942 6.61335 6.69244 6.81246 7.17994 7.20755 7.71789 7.86117 8.03715 8.08268 8.46936 9.08680 9.65146 11.14716 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.025919 B = 0.001755 C = 0.001710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.017619 B =15952.343968 C =16365.607765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.009 4.009 3 C 0.187 3.813 4 N -0.282 5.282 5 N -0.275 5.275 6 C 0.155 3.845 7 C 0.012 3.988 8 C -0.150 4.150 9 C 0.064 3.936 10 O -0.379 6.379 11 C 0.064 3.936 12 C -0.150 4.150 13 O -0.221 6.221 14 C 0.017 3.983 15 N -0.461 5.461 16 C 0.020 3.980 17 C -0.098 4.098 18 C 0.020 3.980 19 C -0.517 4.517 20 H 0.056 0.944 21 C 0.055 3.945 22 N -0.896 5.896 23 Si 0.892 3.108 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.284 1.284 27 C 0.023 3.977 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.089 0.911 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.055 0.945 35 H 0.102 0.898 36 H 0.055 0.945 37 H 0.102 0.898 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.047 0.953 44 H 0.047 0.953 45 H 0.055 0.945 46 H 0.014 0.986 47 H 0.015 0.985 48 H 0.259 0.741 49 H 0.087 0.913 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.582 30.432 6.010 33.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.012 4.012 3 C -0.023 4.023 4 N -0.128 5.128 5 N -0.122 5.122 6 C -0.056 4.056 7 C -0.008 4.008 8 C -0.188 4.188 9 C -0.013 4.013 10 O -0.297 6.297 11 C -0.013 4.013 12 C -0.188 4.188 13 O -0.100 6.100 14 C -0.113 4.113 15 N -0.183 5.183 16 C -0.108 4.108 17 C -0.136 4.136 18 C -0.018 4.018 19 C -0.556 4.556 20 H 0.074 0.926 21 C -0.146 4.146 22 N -0.536 5.536 23 Si 0.720 3.280 24 H -0.197 1.197 25 H -0.211 1.211 26 H -0.210 1.210 27 C -0.107 4.107 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.108 0.892 31 H 0.120 0.880 32 H 0.109 0.891 33 H 0.099 0.901 34 H 0.073 0.927 35 H 0.121 0.879 36 H 0.073 0.927 37 H 0.120 0.880 38 H 0.099 0.901 39 H 0.108 0.892 40 H 0.113 0.887 41 H 0.097 0.903 42 H 0.090 0.910 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.074 0.926 46 H 0.033 0.967 47 H 0.034 0.966 48 H 0.069 0.931 49 H 0.105 0.895 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -12.523 29.827 5.742 32.855 hybrid contribution -0.622 -0.585 -0.266 0.894 sum -13.145 29.242 5.476 32.525 Atomic orbital electron populations 1.21528 0.89568 1.04213 1.02583 1.20813 0.97390 0.80974 1.02019 1.27894 0.87972 0.88842 0.97637 1.74435 1.14878 1.05688 1.17810 1.74377 1.21630 1.00066 1.16081 1.27819 0.83742 0.93700 1.00321 1.19729 1.02216 0.80795 0.98045 1.22316 1.04684 0.95931 0.95870 1.22599 0.95068 0.93083 0.90515 1.87988 1.59627 1.64977 1.17155 1.22593 1.00989 0.90712 0.86960 1.22322 1.01800 0.97154 0.97541 1.84778 1.41298 1.15952 1.67930 1.24002 1.00866 0.90066 0.96340 1.69029 1.36638 1.10114 1.02522 1.22908 0.89566 0.96516 1.01782 1.21522 1.01010 0.93858 0.97243 1.19099 0.91592 0.93931 0.97144 1.21287 0.99426 1.06421 1.28428 0.92600 1.25035 0.95260 0.98271 0.96024 1.69975 1.04175 1.36086 1.43338 0.86543 0.78175 0.82931 0.80397 1.19731 1.21057 1.21042 1.24078 1.01561 0.89008 0.96039 0.91589 0.91978 0.89189 0.88041 0.89147 0.90096 0.92697 0.87945 0.92695 0.87953 0.90118 0.89164 0.88687 0.90339 0.91006 0.93498 0.93457 0.92620 0.96741 0.96627 0.93106 0.89469 0.88594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.09 8.98 37.16 0.33 -0.76 16 2 C -0.01 -0.11 1.48 -155.13 -0.23 -0.34 16 3 C 0.19 2.36 7.26 -12.94 -0.09 2.26 16 4 N -0.28 -4.16 11.81 32.55 0.38 -3.78 16 5 N -0.28 -3.75 12.22 32.55 0.40 -3.35 16 6 C 0.16 1.66 7.00 -12.94 -0.09 1.57 16 7 C 0.01 0.08 2.75 -91.59 -0.25 -0.17 16 8 C -0.15 -0.92 5.40 -26.59 -0.14 -1.07 16 9 C 0.06 0.32 6.84 37.21 0.25 0.57 16 10 O -0.38 -2.68 10.77 -35.23 -0.38 -3.06 16 11 C 0.06 0.32 6.84 37.20 0.25 0.57 16 12 C -0.15 -0.92 5.41 -26.59 -0.14 -1.07 16 13 O -0.22 -2.50 10.58 5.36 0.06 -2.44 16 14 C 0.02 0.21 6.83 -7.54 -0.05 0.16 16 15 N -0.46 -6.67 6.14 -244.59 -1.50 -8.17 16 16 C 0.02 0.35 4.82 -3.83 -0.02 0.33 16 17 C -0.10 -2.07 5.48 -26.73 -0.15 -2.22 16 18 C 0.02 0.52 4.97 -27.88 -0.14 0.39 16 19 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 20 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 21 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 22 N -0.90 -27.41 13.29 55.43 0.74 -26.67 16 23 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 24 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 27 C 0.02 0.30 6.80 -7.54 -0.05 0.24 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.09 0.83 7.92 -51.93 -0.41 0.42 16 31 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.05 0.19 8.14 -51.93 -0.42 -0.23 16 35 H 0.10 0.40 8.14 -51.92 -0.42 -0.02 16 36 H 0.05 0.19 8.14 -51.93 -0.42 -0.23 16 37 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.09 1.00 8.12 -51.93 -0.42 0.58 16 41 H 0.08 1.02 7.87 -51.93 -0.41 0.61 16 42 H 0.07 1.24 8.08 -51.93 -0.42 0.82 16 43 H 0.05 0.83 7.30 -51.93 -0.38 0.45 16 44 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 46 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 48 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 49 H 0.09 1.26 7.04 -51.93 -0.37 0.90 16 50 H 0.10 1.17 8.12 -51.93 -0.42 0.75 16 LS Contribution 403.72 15.07 6.08 6.08 Total: -1.00 -33.54 403.72 -8.88 -42.42 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -8.71 Total: -4.75 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -0.93 Total: -13.27 kcal Atomic # 7 Polarization: -41.99 SS G_CDS: 0.02 Total: -41.97 kcal Atomic # 8 Polarization: -5.18 SS G_CDS: -0.32 Total: -5.50 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.54 -8.88 -42.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327718635.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.318 kcal (2) G-P(sol) polarization free energy of solvation -33.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds