Wall clock time and date at job start Tue Mar 31 2020 18:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50702 * 113.25423 * 2 1 4 4 N 1.30277 * 126.28425 * 192.64001 * 3 2 1 5 5 N 1.28659 * 109.37936 * 179.82826 * 4 3 2 6 6 C 1.30271 * 109.38696 * 0.44469 * 5 4 3 7 7 C 1.50699 * 126.28641 * 179.73047 * 6 5 4 8 8 C 1.53170 * 109.54263 * 59.55655 * 7 6 5 9 9 C 1.53095 * 109.16262 * 183.15328 * 8 7 6 10 10 O 1.42904 * 109.41555 * 57.60922 * 9 8 7 11 11 C 1.42897 * 114.09539 * 298.84113 * 10 9 8 12 12 C 1.53091 * 109.41715 * 61.15985 * 11 10 9 13 13 O 1.34365 * 126.27955 * 12.95403 * 3 2 1 14 14 C 1.53514 * 114.17354 * 132.95043 * 2 1 3 15 15 N 1.47481 * 87.93114 * 87.62333 * 14 2 1 16 16 C 1.46896 * 111.00014 * 138.70261 * 15 14 2 17 17 C 1.52997 * 109.47114 * 170.00294 * 16 15 14 18 18 C 1.53006 * 109.47127 * 180.02562 * 17 16 15 19 19 C 1.50698 * 109.47184 * 180.02562 * 18 17 16 20 20 H 1.08005 * 119.99819 * 359.97438 * 19 18 17 21 21 C 1.37875 * 120.00046 * 180.02562 * 19 18 17 22 22 N 1.31511 * 120.00192 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99979 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.47309 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47510 * 119.99847 * 23 21 19 26 26 H 1.48506 * 109.47246 * 239.99882 * 23 21 19 27 27 C 1.47486 * 87.83444 * 27.01026 * 15 14 2 28 28 H 1.08999 * 109.47324 * 287.04340 * 1 2 3 29 29 H 1.09001 * 109.47649 * 47.04838 * 1 2 3 30 30 H 1.08999 * 109.47018 * 167.04909 * 1 2 3 31 31 H 1.09002 * 109.54403 * 179.82611 * 7 6 5 32 32 H 1.08996 * 109.52440 * 303.05501 * 8 7 6 33 33 H 1.08995 * 109.52567 * 63.24837 * 8 7 6 34 34 H 1.09003 * 109.48126 * 297.62530 * 9 8 7 35 35 H 1.09007 * 109.47948 * 177.59126 * 9 8 7 36 36 H 1.09003 * 109.48466 * 301.17506 * 11 10 9 37 37 H 1.09004 * 109.48032 * 181.13975 * 11 10 9 38 38 H 1.09000 * 109.52238 * 182.48442 * 12 11 10 39 39 H 1.09004 * 109.57442 * 62.32287 * 12 11 10 40 40 H 1.08996 * 113.47400 * 332.86264 * 14 2 1 41 41 H 1.08998 * 113.53003 * 202.40124 * 14 2 1 42 42 H 1.08996 * 109.47194 * 50.00462 * 16 15 14 43 43 H 1.09001 * 109.47271 * 290.00025 * 16 15 14 44 44 H 1.09001 * 109.47502 * 60.00479 * 17 16 15 45 45 H 1.09001 * 109.47289 * 300.00275 * 17 16 15 46 46 H 1.09001 * 109.47002 * 299.99574 * 18 17 16 47 47 H 1.08993 * 109.46955 * 60.00011 * 18 17 16 48 48 H 0.96996 * 120.00505 * 179.97438 * 22 21 19 49 49 H 1.08998 * 113.47729 * 87.75610 * 27 15 14 50 50 H 1.09001 * 113.47597 * 218.21731 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1250 1.3846 0.0000 4 7 3.3708 1.6884 -0.2298 5 7 3.5207 2.9638 -0.1515 6 6 2.3776 3.5164 0.1402 7 6 2.1214 4.9895 0.3282 8 6 2.4828 5.7405 -0.9569 9 6 2.2942 7.2429 -0.7309 10 8 3.1037 7.6631 0.3693 11 6 2.7792 7.0289 1.6080 12 6 2.9872 5.5179 1.4760 13 8 1.4690 2.5318 0.2428 14 6 2.1586 -0.9543 1.0251 15 7 2.0811 -2.0161 0.0045 16 6 3.2986 -2.8379 0.0063 17 6 3.0852 -4.0675 -0.8788 18 6 4.3532 -4.9239 -0.8765 19 6 4.1432 -6.1347 -1.7488 20 1 3.1996 -6.2792 -2.2539 21 6 5.1553 -7.0584 -1.9011 22 7 6.3042 -6.8827 -1.2855 23 14 4.8948 -8.5596 -2.9817 24 1 3.5261 -8.5242 -3.5567 25 1 5.8939 -8.5581 -4.0804 26 1 5.0572 -9.7905 -2.1668 27 6 2.1585 -0.9588 -1.0208 28 1 -0.3634 0.3012 0.9825 29 1 -0.3634 0.7002 -0.7522 30 1 -0.3633 -1.0015 -0.2303 31 1 1.0688 5.1496 0.5619 32 1 3.5220 5.5389 -1.2166 33 1 1.8331 5.4097 -1.7671 34 1 1.2467 7.4488 -0.5110 35 1 2.5909 7.7856 -1.6286 36 1 1.7379 7.2319 1.8586 37 1 3.4251 7.4173 2.3954 38 1 2.6982 5.0279 2.4058 39 1 4.0365 5.3107 1.2659 40 1 1.5247 -1.1386 1.8924 41 1 3.1797 -0.6882 1.2982 42 1 3.5199 -3.1573 1.0246 43 1 4.1328 -2.2524 -0.3803 44 1 2.8640 -3.7482 -1.8973 45 1 2.2510 -4.6531 -0.4924 46 1 5.1876 -4.3385 -1.2628 47 1 4.5740 -5.2432 0.1420 48 1 7.0161 -7.5328 -1.3923 49 1 3.1797 -0.6932 -1.2945 50 1 1.5247 -1.1470 -1.8874 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327718635.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:03 Heat of formation + Delta-G solvation = -16.547052 kcal Electronic energy + Delta-G solvation = -28500.434029 eV Core-core repulsion = 24529.095855 eV Total energy + Delta-G solvation = -3971.338174 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -45.44620 -41.65285 -40.34309 -37.35817 -36.42267 -35.78761 -34.49456 -32.62505 -32.16082 -30.99116 -28.84239 -27.37012 -27.16807 -26.11191 -25.16614 -24.62387 -23.84771 -23.14053 -21.84525 -21.29996 -20.29214 -18.66964 -18.54241 -18.32076 -17.43458 -17.21091 -16.96518 -16.73639 -16.50914 -16.17578 -15.86344 -15.69274 -15.18040 -14.89295 -14.67981 -14.48961 -14.39135 -13.96052 -13.85445 -13.61300 -13.51838 -13.40107 -13.27512 -13.02431 -12.88842 -12.76381 -12.64925 -12.51709 -12.42916 -12.25380 -12.13043 -12.08249 -11.93710 -11.78126 -11.44055 -11.41816 -11.35437 -11.06209 -10.64309 -10.56945 -10.55441 -10.07545 -8.20917 -6.32106 -0.04714 0.99288 1.16589 1.39383 1.39800 1.53543 2.39529 2.44451 2.90788 2.97434 3.01717 3.12163 3.27175 3.39939 3.56907 3.71877 3.76816 3.80576 3.91065 3.93041 4.09250 4.24593 4.25000 4.25160 4.32828 4.37024 4.49879 4.52069 4.55607 4.58676 4.66293 4.68222 4.69295 4.74299 4.80483 4.81158 4.83118 4.88394 4.99981 5.02065 5.04989 5.18218 5.19876 5.26111 5.29193 5.51306 5.73344 5.84349 5.86950 6.24396 6.25092 6.84998 7.14182 7.37208 8.91293 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.025919 B = 0.001755 C = 0.001710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.017619 B =15952.343968 C =16365.607765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.006 3.994 3 C 0.188 3.812 4 N -0.318 5.318 5 N -0.313 5.313 6 C 0.173 3.827 7 C 0.011 3.989 8 C -0.146 4.146 9 C 0.065 3.935 10 O -0.403 6.403 11 C 0.065 3.935 12 C -0.146 4.146 13 O -0.216 6.216 14 C 0.018 3.982 15 N -0.462 5.462 16 C 0.032 3.968 17 C -0.082 4.082 18 C 0.023 3.977 19 C -0.541 4.541 20 H 0.060 0.940 21 C -0.003 4.003 22 N -0.934 5.934 23 Si 0.967 3.033 24 H -0.261 1.261 25 H -0.278 1.278 26 H -0.277 1.277 27 C 0.017 3.983 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.132 0.868 32 H 0.064 0.936 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.110 0.890 36 H 0.079 0.921 37 H 0.110 0.890 38 H 0.089 0.911 39 H 0.064 0.936 40 H 0.118 0.882 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.037 0.963 44 H 0.047 0.953 45 H 0.056 0.944 46 H -0.012 1.012 47 H -0.007 1.007 48 H 0.263 0.737 49 H 0.069 0.931 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.469 31.491 6.076 36.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.004 3.996 3 C -0.024 4.024 4 N -0.164 5.164 5 N -0.158 5.158 6 C -0.039 4.039 7 C -0.009 4.009 8 C -0.185 4.185 9 C -0.011 4.011 10 O -0.322 6.322 11 C -0.011 4.011 12 C -0.185 4.185 13 O -0.095 6.095 14 C -0.112 4.112 15 N -0.183 5.183 16 C -0.096 4.096 17 C -0.120 4.120 18 C -0.015 4.015 19 C -0.579 4.579 20 H 0.079 0.921 21 C -0.201 4.201 22 N -0.575 5.575 23 Si 0.792 3.208 24 H -0.185 1.185 25 H -0.204 1.204 26 H -0.202 1.202 27 C -0.113 4.113 28 H 0.101 0.899 29 H 0.090 0.910 30 H 0.109 0.891 31 H 0.150 0.850 32 H 0.083 0.917 33 H 0.107 0.893 34 H 0.097 0.903 35 H 0.128 0.872 36 H 0.097 0.903 37 H 0.128 0.872 38 H 0.107 0.893 39 H 0.083 0.917 40 H 0.136 0.864 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.055 0.945 44 H 0.066 0.934 45 H 0.075 0.925 46 H 0.006 0.994 47 H 0.011 0.989 48 H 0.072 0.928 49 H 0.087 0.913 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -15.411 30.904 5.809 35.019 hybrid contribution 0.306 -0.823 -0.264 0.917 sum -15.105 30.081 5.544 34.114 Atomic orbital electron populations 1.21559 0.87191 1.04644 1.03980 1.20778 0.98791 0.79901 1.00146 1.27982 0.87575 0.89532 0.97341 1.74380 1.16346 1.06569 1.19075 1.74327 1.23365 0.99939 1.18198 1.28634 0.82826 0.94833 0.97614 1.20083 1.04094 0.78108 0.98581 1.22293 1.03285 0.97060 0.95838 1.22717 0.96169 0.91806 0.90450 1.87962 1.60664 1.65394 1.18185 1.22713 1.02629 0.89294 0.86503 1.22299 1.00148 0.98441 0.97596 1.84789 1.41075 1.15666 1.67950 1.24049 1.00945 0.89316 0.96852 1.68965 1.34376 1.10880 1.04103 1.22621 0.90739 0.95518 1.00732 1.21249 0.98104 0.94540 0.98151 1.19006 0.93236 0.94032 0.95189 1.21722 0.99797 1.07465 1.28950 0.92126 1.26023 0.94830 1.01778 0.97454 1.70108 1.05160 1.37463 1.44766 0.85366 0.78628 0.78517 0.78338 1.18482 1.20417 1.20235 1.24095 1.01112 0.89327 0.96751 0.89904 0.90973 0.89116 0.84988 0.91720 0.89258 0.90310 0.87191 0.90307 0.87191 0.89258 0.91734 0.86384 0.91508 0.91013 0.94500 0.93449 0.92478 0.99411 0.98882 0.92788 0.91323 0.87488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.77 8.98 71.98 0.65 -1.12 16 2 C 0.01 0.14 1.48 -52.58 -0.08 0.06 16 3 C 0.19 4.59 7.26 88.34 0.64 5.24 16 4 N -0.32 -9.62 11.81 -165.50 -1.95 -11.57 16 5 N -0.31 -8.74 12.22 -165.50 -2.02 -10.76 16 6 C 0.17 3.54 7.00 88.34 0.62 4.16 16 7 C 0.01 0.13 2.75 -11.42 -0.03 0.10 16 8 C -0.15 -1.64 5.40 30.68 0.17 -1.47 16 9 C 0.06 0.51 6.84 72.01 0.49 1.01 16 10 O -0.40 -5.08 10.77 -148.98 -1.60 -6.69 16 11 C 0.06 0.51 6.84 72.01 0.49 1.01 16 12 C -0.15 -1.63 5.41 30.69 0.17 -1.46 16 13 O -0.22 -4.54 10.58 -3.74 -0.04 -4.58 16 14 C 0.02 0.42 6.83 83.58 0.57 0.99 16 15 N -0.46 -13.06 6.14 -927.76 -5.69 -18.75 16 16 C 0.03 1.14 4.82 86.30 0.42 1.56 16 17 C -0.08 -3.53 5.48 30.60 0.17 -3.36 16 18 C 0.02 1.26 4.97 29.85 0.15 1.41 16 19 C -0.54 -31.76 9.11 25.60 0.23 -31.53 16 20 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 21 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 22 N -0.93 -58.32 13.29 21.45 0.28 -58.04 16 23 Si 0.97 45.25 29.54 68.60 2.03 47.28 16 24 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 25 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 26 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 27 C 0.02 0.43 6.80 83.57 0.57 1.00 16 28 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.09 1.42 7.92 -2.39 -0.02 1.40 16 31 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 35 H 0.11 0.68 8.14 -2.38 -0.02 0.66 16 36 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 37 H 0.11 0.68 8.14 -2.38 -0.02 0.66 16 38 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.12 2.23 8.12 -2.39 -0.02 2.21 16 41 H 0.07 1.75 7.87 -2.39 -0.02 1.73 16 42 H 0.07 2.52 8.08 -2.39 -0.02 2.50 16 43 H 0.04 1.37 7.30 -2.39 -0.02 1.35 16 44 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 45 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 46 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 47 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 48 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 49 H 0.07 2.07 7.04 -2.39 -0.02 2.05 16 50 H 0.11 2.52 8.12 -2.39 -0.02 2.50 16 Total: -1.00 -74.44 403.72 -2.42 -76.86 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: 0.91 Total: 8.42 kcal Atomic # 6 Polarization: -27.85 SS G_CDS: 5.68 Total: -22.17 kcal Atomic # 7 Polarization: -89.73 SS G_CDS: -9.39 Total: -99.12 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: -1.64 Total: -11.26 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -74.44 -2.42 -76.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327718635.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.310 kcal (2) G-P(sol) polarization free energy of solvation -74.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds