Wall clock time and date at job start Tue Mar 31 2020 18:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47168 * 10.26207 * 3 2 1 5 5 C 1.52996 * 109.47131 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.47188 * 180.02562 * 5 4 3 7 7 O 1.21282 * 120.00025 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00035 * 180.02562 * 6 5 4 9 9 C 1.48152 * 127.84001 * 0.02562 * 8 6 5 10 10 C 1.54386 * 104.61798 * 219.58819 * 9 8 6 11 11 H 1.09004 * 110.33627 * 95.00849 * 10 9 8 12 12 N 1.46897 * 110.34093 * 217.15317 * 10 9 8 13 13 C 1.46894 * 111.00435 * 273.55293 * 12 10 9 14 14 C 1.50703 * 109.47323 * 180.02562 * 13 12 10 15 15 O 1.21298 * 119.99775 * 359.97438 * 14 13 12 16 16 N 1.34772 * 120.00130 * 180.02562 * 14 13 12 17 17 C 1.37094 * 120.00290 * 179.97438 * 16 14 13 18 18 H 1.08007 * 119.99716 * 0.02562 * 17 16 14 19 19 C 1.38951 * 120.00413 * 179.97438 * 17 16 14 20 20 N 1.31414 * 119.99822 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00095 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47147 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47197 * 120.00616 * 21 19 17 24 24 H 1.48503 * 109.47431 * 240.00568 * 21 19 17 25 25 C 1.54283 * 104.96167 * 336.13431 * 10 9 8 26 26 C 1.53002 * 110.34184 * 118.86966 * 25 10 9 27 27 C 1.52998 * 110.34182 * 241.02114 * 25 10 9 28 28 C 1.48151 * 127.83814 * 179.70643 * 8 6 5 29 29 H 4.44645 * 5.63342 * 179.97438 * 4 1 2 30 30 H 1.09001 * 109.47046 * 130.25833 * 3 2 1 31 31 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 32 32 H 1.09001 * 109.47289 * 300.00032 * 4 3 2 33 33 H 1.09004 * 109.47261 * 59.99776 * 4 3 2 34 34 H 1.09001 * 109.46997 * 299.99574 * 5 4 3 35 35 H 1.08996 * 109.47452 * 60.00000 * 5 4 3 36 36 H 1.08998 * 110.40161 * 338.37741 * 9 8 6 37 37 H 1.09002 * 110.40383 * 100.80141 * 9 8 6 38 38 H 1.00908 * 111.00075 * 37.50690 * 12 10 9 39 39 H 1.09002 * 109.46893 * 299.99472 * 13 12 10 40 40 H 1.08991 * 109.47410 * 60.00111 * 13 12 10 41 41 H 0.97005 * 120.00323 * 359.97438 * 16 14 13 42 42 H 0.97001 * 119.99677 * 179.97438 * 20 19 17 43 43 H 1.09006 * 109.46612 * 59.99904 * 26 25 10 44 44 H 1.08996 * 109.47126 * 179.97438 * 26 25 10 45 45 H 1.08996 * 109.46957 * 300.00221 * 26 25 10 46 46 H 1.08998 * 109.47211 * 60.00282 * 27 25 10 47 47 H 1.08993 * 109.46947 * 180.02562 * 27 25 10 48 48 H 1.09006 * 109.47097 * 300.00231 * 27 25 10 49 49 H 1.09005 * 110.40494 * 259.19144 * 28 8 6 50 50 H 1.08998 * 110.40839 * 21.62289 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.4185 -0.2570 5 6 4.6866 -1.4179 -0.2563 6 6 5.1896 -2.8157 -0.5101 7 8 4.4019 -3.7230 -0.6747 8 7 6.5147 -3.0575 -0.5530 9 6 7.6216 -2.0889 -0.3755 10 6 8.6788 -2.5098 -1.4190 11 1 8.5605 -1.9288 -2.3337 12 7 10.0318 -2.3339 -0.8748 13 6 10.5130 -0.9633 -1.0930 14 6 11.9009 -0.8214 -0.5232 15 8 12.4364 -1.7689 0.0124 16 7 12.5468 0.3584 -0.6079 17 6 13.8092 0.4876 -0.0892 18 1 14.2864 -0.3562 0.3870 19 6 14.4754 1.7039 -0.1770 20 7 13.8951 2.7305 -0.7568 21 14 16.1958 1.8797 0.5293 22 1 16.6213 0.5870 1.1236 23 1 17.1386 2.2607 -0.5530 24 1 16.1953 2.9309 1.5782 25 6 8.3975 -4.0022 -1.6914 26 6 8.0376 -4.2156 -3.1631 27 6 9.6137 -4.8501 -1.3138 28 6 7.1950 -4.3535 -0.7820 29 1 -1.0498 -0.0004 0.0001 30 1 3.0090 0.6649 -0.7843 31 1 3.0092 0.3479 0.9672 32 1 2.7936 -2.0829 0.5272 33 1 2.7934 -1.7658 -1.2243 34 1 5.0500 -0.7536 -1.0404 35 1 5.0494 -1.0709 0.7111 36 1 7.2746 -1.0749 -0.5736 37 1 8.0320 -2.1612 0.6317 38 1 10.0621 -2.5761 0.1043 39 1 10.5363 -0.7523 -2.1621 40 1 9.8432 -0.2600 -0.5983 41 1 12.1185 1.1163 -1.0360 42 1 14.3600 3.5797 -0.8178 43 1 8.8671 -3.8898 -3.7908 44 1 7.8424 -5.2733 -3.3396 45 1 7.1476 -3.6357 -3.4072 46 1 9.8344 -4.7176 -0.2547 47 1 9.4000 -5.9004 -1.5121 48 1 10.4734 -4.5365 -1.9062 49 1 7.5399 -4.7739 0.1627 50 1 6.5259 -5.0500 -1.2872 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332371219.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:07 Heat of formation + Delta-G solvation = -45.734697 kcal Electronic energy + Delta-G solvation = -28636.984189 eV Core-core repulsion = 24664.380345 eV Total energy + Delta-G solvation = -3972.603845 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.45795 -40.12302 -39.39597 -36.52500 -36.10476 -35.39997 -34.57471 -33.20573 -33.15724 -30.01083 -29.38048 -28.31611 -27.48577 -26.88137 -25.66150 -23.62242 -22.96132 -21.09930 -20.32636 -19.97690 -19.75626 -18.99134 -17.98572 -17.64442 -17.23794 -17.03429 -16.43421 -16.37100 -16.21896 -15.77557 -15.41163 -15.15719 -15.04811 -14.91278 -14.66569 -14.26374 -14.11142 -13.89671 -13.66919 -13.52396 -13.43075 -13.26453 -13.12555 -12.98328 -12.79206 -12.69769 -12.58933 -12.41299 -12.36122 -12.10186 -11.96788 -11.81914 -11.62440 -11.47009 -11.46522 -11.18909 -10.97713 -10.89358 -10.27229 -9.96207 -9.82831 -9.20653 -8.43414 -5.90913 1.38586 1.44411 1.57557 1.59616 1.78520 1.92612 1.99327 2.12303 2.31722 2.94152 3.24943 3.36059 3.50387 3.51936 3.71552 3.80467 3.92621 4.05730 4.11807 4.14886 4.26235 4.39139 4.40238 4.47445 4.51571 4.61868 4.63839 4.66209 4.71522 4.73606 4.79310 4.79729 4.85851 4.90824 5.00513 5.12614 5.15944 5.17629 5.21532 5.30477 5.35617 5.40786 5.45432 5.65427 5.95476 6.16703 6.41881 6.54265 6.65226 6.72089 7.11264 7.17907 7.62956 8.18414 8.74027 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011602 B = 0.002252 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.772993 B =12430.266490 C =14407.444456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.217 4.217 3 C -0.012 4.012 4 C -0.091 4.091 5 C -0.130 4.130 6 C 0.528 3.472 7 O -0.589 6.589 8 N -0.618 5.618 9 C 0.071 3.929 10 C 0.086 3.914 11 H 0.102 0.898 12 N -0.660 5.660 13 C 0.064 3.936 14 C 0.439 3.561 15 O -0.623 6.623 16 N -0.575 5.575 17 C -0.329 4.329 18 H 0.078 0.922 19 C -0.013 4.013 20 N -0.920 5.920 21 Si 0.989 3.011 22 H -0.274 1.274 23 H -0.273 1.273 24 H -0.272 1.272 25 C -0.063 4.063 26 C -0.129 4.129 27 C -0.112 4.112 28 C 0.110 3.890 29 H 0.239 0.761 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.122 0.878 35 H 0.118 0.882 36 H 0.108 0.892 37 H 0.078 0.922 38 H 0.347 0.653 39 H 0.104 0.896 40 H 0.075 0.925 41 H 0.397 0.603 42 H 0.276 0.724 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.051 0.949 46 H 0.049 0.951 47 H 0.053 0.947 48 H 0.055 0.945 49 H 0.073 0.927 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.590 -4.413 -1.819 21.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.217 4.217 3 C -0.048 4.048 4 C -0.130 4.130 5 C -0.169 4.169 6 C 0.319 3.681 7 O -0.470 6.470 8 N -0.351 5.351 9 C -0.053 4.053 10 C -0.026 4.026 11 H 0.120 0.880 12 N -0.292 5.292 13 C -0.068 4.068 14 C 0.227 3.773 15 O -0.509 6.509 16 N -0.212 5.212 17 C -0.459 4.459 18 H 0.096 0.904 19 C -0.213 4.213 20 N -0.561 5.561 21 Si 0.813 3.187 22 H -0.199 1.199 23 H -0.199 1.199 24 H -0.197 1.197 25 C -0.065 4.065 26 C -0.187 4.187 27 C -0.170 4.170 28 C -0.013 4.013 29 H 0.256 0.744 30 H 0.123 0.877 31 H 0.122 0.878 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.140 0.860 35 H 0.136 0.864 36 H 0.126 0.874 37 H 0.096 0.904 38 H 0.168 0.832 39 H 0.122 0.878 40 H 0.093 0.907 41 H 0.231 0.769 42 H 0.086 0.914 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.070 0.930 46 H 0.068 0.932 47 H 0.072 0.928 48 H 0.074 0.926 49 H 0.091 0.909 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.357 -5.543 -2.130 21.206 hybrid contribution 0.085 0.833 0.780 1.145 sum -20.272 -4.710 -1.350 20.856 Atomic orbital electron populations 1.25703 0.97097 1.00052 1.00841 1.23805 0.95808 1.01167 1.00890 1.18843 0.83866 0.97257 1.04830 1.21158 0.93490 0.96023 1.02297 1.21708 0.96457 0.92298 1.06470 1.20994 0.79850 0.92145 0.75125 1.90694 1.55279 1.48571 1.52439 1.48980 1.04660 1.11111 1.70383 1.23440 0.87311 0.94620 0.99948 1.22638 0.85593 0.96344 0.97979 0.88024 1.60240 1.22210 1.22751 1.24003 1.21603 0.91723 0.91191 1.02310 1.20950 0.89652 0.82724 0.83992 1.90509 1.70336 1.40105 1.49931 1.41934 1.15303 1.11526 1.52486 1.19667 0.92950 0.97692 1.35609 0.90416 1.25965 1.03366 0.94494 0.97447 1.69667 1.39861 1.02514 1.44061 0.84929 0.77530 0.78147 0.78101 1.19888 1.19880 1.19728 1.21520 0.94373 0.94748 0.95810 1.21771 1.01101 1.01908 0.93892 1.21456 0.96417 0.97736 1.01434 1.22598 0.93059 0.86324 0.99308 0.74409 0.87655 0.87813 0.92745 0.92555 0.86029 0.86370 0.87355 0.90415 0.83205 0.87782 0.90698 0.76935 0.91428 0.92019 0.92086 0.93023 0.93200 0.92802 0.92564 0.90855 0.91024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.41 19.25 74.32 1.43 -1.98 16 2 C -0.22 -3.70 13.34 31.13 0.42 -3.28 16 3 C -0.01 -0.14 5.70 28.79 0.16 0.03 16 4 C -0.09 -1.40 4.46 30.59 0.14 -1.27 16 5 C -0.13 -1.61 4.68 29.85 0.14 -1.47 16 6 C 0.53 11.02 7.91 87.66 0.69 11.72 16 7 O -0.59 -17.52 16.25 -3.04 -0.05 -17.57 16 8 N -0.62 -11.48 3.31 -807.12 -2.67 -14.15 16 9 C 0.07 1.07 6.51 86.53 0.56 1.63 16 10 C 0.09 1.57 2.99 45.82 0.14 1.71 16 11 H 0.10 1.73 7.43 -2.38 -0.02 1.71 16 12 N -0.66 -16.69 4.22 -490.92 -2.07 -18.76 16 13 C 0.06 1.80 6.00 85.56 0.51 2.32 16 14 C 0.44 19.02 7.82 87.66 0.69 19.71 16 15 O -0.62 -32.15 15.78 -3.08 -0.05 -32.20 16 16 N -0.57 -27.62 5.29 -306.98 -1.62 -29.24 16 17 C -0.33 -17.99 9.68 84.04 0.81 -17.18 16 18 H 0.08 4.57 7.16 -2.91 -0.02 4.55 16 19 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 20 N -0.92 -47.95 13.05 21.66 0.28 -47.67 16 21 Si 0.99 41.85 29.55 68.60 2.03 43.88 16 22 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 23 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 24 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 25 C -0.06 -1.18 1.03 -51.13 -0.05 -1.24 16 26 C -0.13 -2.29 8.26 71.98 0.59 -1.69 16 27 C -0.11 -2.41 7.46 71.98 0.54 -1.88 16 28 C 0.11 2.17 6.16 86.68 0.53 2.70 16 29 H 0.24 2.00 7.80 -4.43 -0.03 1.97 16 30 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.05 1.03 8.10 -2.39 -0.02 1.02 16 33 H 0.06 1.06 8.10 -2.38 -0.02 1.04 16 34 H 0.12 0.94 7.95 -2.39 -0.02 0.92 16 35 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.11 1.09 7.30 -2.39 -0.02 1.07 16 37 H 0.08 1.20 7.60 -2.39 -0.02 1.18 16 38 H 0.35 9.42 7.33 -89.69 -0.66 8.77 16 39 H 0.10 2.66 8.08 -2.39 -0.02 2.64 16 40 H 0.08 1.70 8.11 -2.39 -0.02 1.68 16 41 H 0.40 17.97 7.90 -92.70 -0.73 17.24 16 42 H 0.28 13.51 8.31 -92.71 -0.77 12.74 16 43 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 44 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.05 1.14 7.44 -2.39 -0.02 1.12 16 47 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 48 H 0.06 1.45 7.84 -2.38 -0.02 1.43 16 49 H 0.07 1.43 7.84 -2.38 -0.02 1.41 16 50 H 0.07 1.58 7.61 -2.39 -0.02 1.56 16 Total: -1.00 -72.36 414.43 3.17 -69.20 By element: Atomic # 1 Polarization: 37.36 SS G_CDS: -0.45 Total: 36.91 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: 7.77 Total: 9.61 kcal Atomic # 7 Polarization: -103.74 SS G_CDS: -6.08 Total: -109.82 kcal Atomic # 8 Polarization: -49.67 SS G_CDS: -0.10 Total: -49.77 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -72.36 3.17 -69.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332371219.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.461 kcal (2) G-P(sol) polarization free energy of solvation -72.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds