Wall clock time and date at job start Tue Mar 31 2020 18:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 113.55773 * 2 1 4 4 C 1.56572 * 114.55778 * 134.23940 * 2 1 3 5 5 H 1.08997 * 114.59068 * 44.83544 * 4 2 1 6 6 N 1.46900 * 114.56029 * 271.04970 * 4 2 1 7 7 C 1.46899 * 110.99866 * 163.99404 * 6 4 2 8 8 C 1.50703 * 109.46964 * 179.97438 * 7 6 4 9 9 O 1.21280 * 119.99797 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99943 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00172 * 180.02562 * 10 8 7 12 12 C 1.50704 * 109.46841 * 270.00031 * 11 10 8 13 13 H 1.08003 * 119.99990 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99626 * 179.97438 * 12 11 10 15 15 N 1.31510 * 120.00105 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99778 * 179.97438 * 14 12 11 17 17 H 1.48508 * 109.47254 * 90.00066 * 16 14 12 18 18 H 1.48499 * 109.47397 * 209.99827 * 16 14 12 19 19 H 1.48501 * 109.47296 * 330.00112 * 16 14 12 20 20 C 1.46504 * 120.00092 * 0.02562 * 10 8 7 21 21 C 1.53002 * 109.47281 * 270.00130 * 20 10 8 22 22 C 1.47199 * 109.46999 * 179.97438 * 21 20 10 23 23 N 8.38456 * 92.26563 * 138.71941 * 2 1 3 24 24 C 1.50337 * 81.30845 * 157.94203 * 4 2 1 25 25 H 1.08991 * 114.28482 * 71.06627 * 24 4 2 26 26 C 1.51863 * 127.86516 * 226.64796 * 24 4 2 27 27 C 1.55782 * 102.15507 * 118.36088 * 26 24 4 28 28 O 1.46077 * 105.44711 * 353.64368 * 27 26 24 29 29 C 1.40075 * 103.54031 * 329.96030 * 28 27 26 30 30 H 1.09005 * 110.76768 * 293.27155 * 29 28 27 31 31 H 1.09000 * 109.46713 * 285.75920 * 1 2 3 32 32 H 1.08999 * 109.46877 * 45.75779 * 1 2 3 33 33 H 1.08997 * 109.46818 * 165.75972 * 1 2 3 34 34 H 1.08997 * 109.46969 * 208.09654 * 3 2 1 35 35 H 1.08988 * 109.47089 * 328.10033 * 3 2 1 36 36 H 1.09007 * 109.46772 * 88.10040 * 3 2 1 37 37 H 1.00896 * 111.00014 * 40.03646 * 6 4 2 38 38 H 1.09000 * 109.47250 * 59.99985 * 7 6 4 39 39 H 1.09003 * 109.47233 * 299.99759 * 7 6 4 40 40 H 1.08999 * 109.47177 * 29.99799 * 11 10 8 41 41 H 1.08993 * 109.47422 * 150.00206 * 11 10 8 42 42 H 0.97000 * 119.99719 * 180.02562 * 15 14 12 43 43 H 1.08995 * 109.47036 * 149.99907 * 20 10 8 44 44 H 1.09009 * 109.46907 * 29.99951 * 20 10 8 45 45 H 1.09000 * 109.46603 * 59.99703 * 21 20 10 46 46 H 1.09000 * 109.46789 * 299.99892 * 21 20 10 47 47 H 1.09001 * 110.85930 * 236.52315 * 26 24 4 48 48 H 1.08997 * 110.86675 * 0.19199 * 26 24 4 49 49 H 1.08997 * 110.25418 * 234.65285 * 27 26 24 50 50 H 1.08998 * 110.25079 * 112.63583 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1415 1.4025 0.0000 4 6 2.1807 -0.9935 1.0203 5 1 1.7300 -1.9858 1.0376 6 7 2.4123 -0.4310 2.3574 7 6 2.6588 -1.4944 3.3404 8 6 2.8920 -0.8805 4.6968 9 8 2.8568 0.3244 4.8312 10 7 3.1397 -1.6702 5.7604 11 6 3.3659 -1.0735 7.0791 12 6 4.8363 -0.7974 7.2599 13 1 5.5327 -1.0424 6.4716 14 6 5.2925 -0.2320 8.4318 15 7 4.4444 0.0668 9.3915 16 14 7.1152 0.1096 8.6563 17 1 7.4267 1.4766 8.1667 18 1 7.4643 0.0080 10.0961 19 1 7.9038 -0.8842 7.8844 20 6 3.1827 -3.1256 5.5979 21 6 1.7836 -3.7048 5.8167 22 6 1.8268 -5.1671 5.6529 23 7 1.8615 -6.2960 5.5274 24 6 3.3391 -0.8498 0.0728 25 1 3.8319 0.1215 0.1113 26 6 4.2025 -1.9508 -0.5177 27 6 3.9365 -1.7930 -2.0445 28 8 2.8852 -0.7847 -2.1541 29 6 2.1504 -0.9472 -0.9727 30 1 1.6426 -1.9117 -0.9629 31 1 -0.3633 0.2791 0.9891 32 1 -0.3633 0.7170 -0.7362 33 1 -0.3633 -0.9961 -0.2528 34 1 3.1177 1.3732 -0.4840 35 1 1.4871 2.0842 -0.5430 36 1 2.2555 1.7492 1.0272 37 1 1.6406 0.1532 2.6425 38 1 3.5385 -2.0659 3.0445 39 1 1.7936 -2.1561 3.3846 40 1 2.8088 -0.1397 7.1557 41 1 3.0278 -1.7628 7.8527 42 1 4.7654 0.4649 10.2157 43 1 3.8708 -3.5524 6.3275 44 1 3.5234 -3.3689 4.5914 45 1 1.0955 -3.2779 5.0871 46 1 1.4430 -3.4615 6.8231 47 1 5.2548 -1.7843 -0.2877 48 1 3.8773 -2.9299 -0.1661 49 1 3.5980 -2.7385 -2.4683 50 1 4.8395 -1.4532 -2.5516 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364426078.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:41 Heat of formation + Delta-G solvation = 39.640218 kcal Electronic energy + Delta-G solvation = -29721.126818 eV Core-core repulsion = 25752.225108 eV Total energy + Delta-G solvation = -3968.901711 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.28580 -39.30408 -37.29584 -36.86944 -35.28435 -34.03635 -32.83477 -32.01491 -30.86659 -29.23038 -28.12411 -27.90313 -26.08899 -24.05639 -23.90058 -22.94463 -22.14806 -20.23970 -19.43624 -18.51793 -17.70091 -16.98881 -16.47567 -16.28934 -16.09914 -15.72396 -15.68326 -15.03534 -14.76501 -14.68553 -14.55771 -14.13787 -13.98463 -13.80591 -13.48426 -13.34508 -12.92566 -12.82916 -12.53538 -12.46148 -12.35780 -12.17281 -11.95883 -11.91223 -11.79563 -11.68239 -11.48501 -11.31877 -11.28497 -11.01442 -10.86389 -10.75665 -10.63454 -10.48596 -10.19285 -10.05005 -9.71389 -9.28775 -8.98720 -8.47433 -8.42518 -7.85362 -6.09233 -4.13602 2.68000 2.75979 2.85667 3.27660 3.29937 3.36476 3.39342 3.53748 3.87041 4.03937 4.14589 4.32449 4.42244 4.47068 4.67278 4.74221 4.78189 4.91734 5.03089 5.04217 5.07181 5.09621 5.17169 5.24771 5.26346 5.28793 5.35197 5.44065 5.49270 5.53429 5.57392 5.57907 5.70478 5.74029 5.78990 5.83430 5.87907 6.03756 6.08456 6.11074 6.25065 6.66447 6.80988 7.03191 7.32265 7.35395 7.42513 7.52617 7.87135 8.16897 8.25109 8.84093 8.98898 9.52121 10.98906 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010148 B = 0.003134 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2758.428325 B = 8933.005534 C =10124.744355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.042 4.042 3 C -0.130 4.130 4 C 0.085 3.915 5 H 0.081 0.919 6 N -0.652 5.652 7 C 0.039 3.961 8 C 0.507 3.493 9 O -0.518 6.518 10 N -0.599 5.599 11 C 0.246 3.754 12 C -0.528 4.528 13 H 0.058 0.942 14 C 0.063 3.937 15 N -0.894 5.894 16 Si 0.897 3.103 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.274 1.274 20 C 0.118 3.882 21 C -0.050 4.050 22 C 0.216 3.784 23 N -0.445 5.445 24 C -0.162 4.162 25 H 0.128 0.872 26 C -0.143 4.143 27 C 0.048 3.952 28 O -0.356 6.356 29 C 0.017 3.983 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.056 0.944 36 H 0.078 0.922 37 H 0.352 0.648 38 H 0.096 0.904 39 H 0.052 0.948 40 H 0.046 0.954 41 H 0.034 0.966 42 H 0.263 0.737 43 H 0.094 0.906 44 H 0.074 0.926 45 H 0.104 0.896 46 H 0.118 0.882 47 H 0.078 0.922 48 H 0.071 0.929 49 H 0.062 0.938 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.191 -4.570 -18.873 20.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.043 4.043 3 C -0.186 4.186 4 C -0.025 4.025 5 H 0.098 0.902 6 N -0.285 5.285 7 C -0.094 4.094 8 C 0.292 3.708 9 O -0.393 6.393 10 N -0.331 5.331 11 C 0.127 3.873 12 C -0.567 4.567 13 H 0.076 0.924 14 C -0.140 4.140 15 N -0.533 5.533 16 Si 0.724 3.276 17 H -0.205 1.205 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.009 4.009 21 C -0.092 4.092 22 C -0.102 4.102 23 N -0.123 5.123 24 C -0.181 4.181 25 H 0.146 0.854 26 C -0.181 4.181 27 C -0.028 4.028 28 O -0.274 6.274 29 C -0.042 4.042 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.173 0.827 38 H 0.114 0.886 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.052 0.948 42 H 0.073 0.927 43 H 0.113 0.887 44 H 0.092 0.908 45 H 0.122 0.878 46 H 0.136 0.864 47 H 0.096 0.904 48 H 0.090 0.910 49 H 0.080 0.920 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.531 -5.240 -19.065 20.823 hybrid contribution 0.258 -0.163 0.507 0.592 sum -6.273 -5.403 -18.558 20.321 Atomic orbital electron populations 1.21826 0.93528 1.02103 1.02449 1.21966 0.94835 0.95391 0.92114 1.21730 1.00615 0.92736 1.03554 1.23011 0.95509 0.96462 0.87487 0.90153 1.60201 1.48174 1.20122 1.00001 1.21980 1.01747 0.93984 0.91676 1.20215 0.77905 0.87443 0.85210 1.90700 1.49931 1.14095 1.84580 1.48214 1.69379 1.04349 1.11177 1.19330 0.97017 0.94612 0.76311 1.21421 0.92715 1.41423 1.01111 0.92367 1.24908 0.98012 0.95264 0.95766 1.69916 1.34246 1.42778 1.06378 0.86523 0.85042 0.78888 0.77119 1.20520 1.21209 1.19932 1.21288 0.93895 0.82546 1.03128 1.19910 1.01630 0.81407 1.06224 1.29136 0.93089 0.95096 0.92837 1.81229 1.08661 1.12935 1.09439 1.24598 0.94288 1.01312 0.97862 0.85415 1.22364 1.01398 0.99352 0.94945 1.24164 0.90747 0.91676 0.96253 1.88480 1.42273 1.56851 1.39785 1.23885 0.97616 0.98925 0.83806 0.90220 0.91770 0.91914 0.92461 0.91250 0.92449 0.90327 0.82657 0.88585 0.93025 0.93597 0.94808 0.92689 0.88748 0.90778 0.87773 0.86447 0.90354 0.91015 0.91981 0.89352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.36 37.16 0.35 -0.76 16 2 C -0.04 -0.39 1.41 -166.66 -0.24 -0.62 16 3 C -0.13 -1.28 8.60 37.16 0.32 -0.96 16 4 C 0.09 0.82 3.46 -80.56 -0.28 0.54 16 5 H 0.08 0.68 7.43 -51.93 -0.39 0.30 16 6 N -0.65 -7.87 5.51 -122.21 -0.67 -8.54 16 7 C 0.04 0.47 4.62 -4.97 -0.02 0.45 16 8 C 0.51 8.89 7.71 -10.99 -0.08 8.81 16 9 O -0.52 -11.60 15.78 5.56 0.09 -11.51 16 10 N -0.60 -10.51 2.46 -175.05 -0.43 -10.94 16 11 C 0.25 5.71 5.16 -5.19 -0.03 5.68 16 12 C -0.53 -13.98 9.39 -34.44 -0.32 -14.30 16 13 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 14 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 15 N -0.89 -25.36 13.29 55.43 0.74 -24.62 16 16 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 19 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 20 C 0.12 1.50 5.17 -4.04 -0.02 1.48 16 21 C -0.05 -0.49 6.03 -29.52 -0.18 -0.67 16 22 C 0.22 2.49 15.43 -20.75 -0.32 2.17 16 23 N -0.45 -6.33 18.54 42.17 0.78 -5.55 16 24 C -0.16 -1.64 4.12 -101.68 -0.42 -2.05 16 25 H 0.13 1.49 5.34 -51.93 -0.28 1.21 16 26 C -0.14 -1.25 6.86 -25.82 -0.18 -1.42 16 27 C 0.05 0.40 7.77 38.64 0.30 0.70 16 28 O -0.36 -3.99 11.48 -33.11 -0.38 -4.37 16 29 C 0.02 0.16 3.99 -38.91 -0.16 0.01 16 30 H 0.08 0.72 7.39 -51.93 -0.38 0.33 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.47 8.00 -51.93 -0.42 0.06 16 33 H 0.06 0.40 7.93 -51.93 -0.41 -0.01 16 34 H 0.07 0.73 6.04 -51.93 -0.31 0.42 16 35 H 0.06 0.52 7.90 -51.94 -0.41 0.11 16 36 H 0.08 0.86 7.50 -51.93 -0.39 0.47 16 37 H 0.35 4.35 8.29 -39.29 -0.33 4.02 16 38 H 0.10 1.12 7.40 -51.93 -0.38 0.73 16 39 H 0.05 0.48 7.18 -51.93 -0.37 0.11 16 40 H 0.05 1.22 7.42 -51.93 -0.39 0.84 16 41 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 42 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 43 H 0.09 1.30 8.07 -51.93 -0.42 0.88 16 44 H 0.07 0.78 6.44 -51.92 -0.33 0.44 16 45 H 0.10 0.80 7.22 -51.93 -0.37 0.43 16 46 H 0.12 1.15 8.14 -51.93 -0.42 0.73 16 47 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 48 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 50 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 405.05 15.07 6.10 6.10 Total: -1.00 -32.78 405.05 -8.25 -41.03 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -8.09 Total: 1.57 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -1.37 Total: 0.66 kcal Atomic # 7 Polarization: -50.07 SS G_CDS: 0.42 Total: -49.65 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.29 Total: -15.88 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.78 -8.25 -41.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364426078.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.668 kcal (2) G-P(sol) polarization free energy of solvation -32.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds