Wall clock time and date at job start Tue Mar 31 2020 18:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 113.55773 * 2 1 4 4 C 1.56572 * 114.55778 * 134.23940 * 2 1 3 5 5 H 1.08997 * 114.59068 * 44.83544 * 4 2 1 6 6 N 1.46900 * 114.56029 * 271.04970 * 4 2 1 7 7 C 1.46899 * 110.99866 * 163.99404 * 6 4 2 8 8 C 1.50703 * 109.46964 * 179.97438 * 7 6 4 9 9 O 1.21280 * 119.99797 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99943 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00172 * 180.02562 * 10 8 7 12 12 C 1.50704 * 109.46841 * 270.00031 * 11 10 8 13 13 H 1.08003 * 119.99990 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99626 * 179.97438 * 12 11 10 15 15 N 1.31510 * 120.00105 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99778 * 179.97438 * 14 12 11 17 17 H 1.48508 * 109.47254 * 90.00066 * 16 14 12 18 18 H 1.48499 * 109.47397 * 209.99827 * 16 14 12 19 19 H 1.48501 * 109.47296 * 330.00112 * 16 14 12 20 20 C 1.46504 * 120.00092 * 0.02562 * 10 8 7 21 21 C 1.53002 * 109.47281 * 270.00130 * 20 10 8 22 22 C 1.47199 * 109.46999 * 179.97438 * 21 20 10 23 23 N 8.38456 * 92.26563 * 138.71941 * 2 1 3 24 24 C 1.50337 * 81.30845 * 157.94203 * 4 2 1 25 25 H 1.08991 * 114.28482 * 71.06627 * 24 4 2 26 26 C 1.51863 * 127.86516 * 226.64796 * 24 4 2 27 27 C 1.55782 * 102.15507 * 118.36088 * 26 24 4 28 28 O 1.46077 * 105.44711 * 353.64368 * 27 26 24 29 29 C 1.40075 * 103.54031 * 329.96030 * 28 27 26 30 30 H 1.09005 * 110.76768 * 293.27155 * 29 28 27 31 31 H 1.09000 * 109.46713 * 285.75920 * 1 2 3 32 32 H 1.08999 * 109.46877 * 45.75779 * 1 2 3 33 33 H 1.08997 * 109.46818 * 165.75972 * 1 2 3 34 34 H 1.08997 * 109.46969 * 208.09654 * 3 2 1 35 35 H 1.08988 * 109.47089 * 328.10033 * 3 2 1 36 36 H 1.09007 * 109.46772 * 88.10040 * 3 2 1 37 37 H 1.00896 * 111.00014 * 40.03646 * 6 4 2 38 38 H 1.09000 * 109.47250 * 59.99985 * 7 6 4 39 39 H 1.09003 * 109.47233 * 299.99759 * 7 6 4 40 40 H 1.08999 * 109.47177 * 29.99799 * 11 10 8 41 41 H 1.08993 * 109.47422 * 150.00206 * 11 10 8 42 42 H 0.97000 * 119.99719 * 180.02562 * 15 14 12 43 43 H 1.08995 * 109.47036 * 149.99907 * 20 10 8 44 44 H 1.09009 * 109.46907 * 29.99951 * 20 10 8 45 45 H 1.09000 * 109.46603 * 59.99703 * 21 20 10 46 46 H 1.09000 * 109.46789 * 299.99892 * 21 20 10 47 47 H 1.09001 * 110.85930 * 236.52315 * 26 24 4 48 48 H 1.08997 * 110.86675 * 0.19199 * 26 24 4 49 49 H 1.08997 * 110.25418 * 234.65285 * 27 26 24 50 50 H 1.08998 * 110.25079 * 112.63583 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1415 1.4025 0.0000 4 6 2.1807 -0.9935 1.0203 5 1 1.7300 -1.9858 1.0376 6 7 2.4123 -0.4310 2.3574 7 6 2.6588 -1.4944 3.3404 8 6 2.8920 -0.8805 4.6968 9 8 2.8568 0.3244 4.8312 10 7 3.1397 -1.6702 5.7604 11 6 3.3659 -1.0735 7.0791 12 6 4.8363 -0.7974 7.2599 13 1 5.5327 -1.0424 6.4716 14 6 5.2925 -0.2320 8.4318 15 7 4.4444 0.0668 9.3915 16 14 7.1152 0.1096 8.6563 17 1 7.4267 1.4766 8.1667 18 1 7.4643 0.0080 10.0961 19 1 7.9038 -0.8842 7.8844 20 6 3.1827 -3.1256 5.5979 21 6 1.7836 -3.7048 5.8167 22 6 1.8268 -5.1671 5.6529 23 7 1.8615 -6.2960 5.5274 24 6 3.3391 -0.8498 0.0728 25 1 3.8319 0.1215 0.1113 26 6 4.2025 -1.9508 -0.5177 27 6 3.9365 -1.7930 -2.0445 28 8 2.8852 -0.7847 -2.1541 29 6 2.1504 -0.9472 -0.9727 30 1 1.6426 -1.9117 -0.9629 31 1 -0.3633 0.2791 0.9891 32 1 -0.3633 0.7170 -0.7362 33 1 -0.3633 -0.9961 -0.2528 34 1 3.1177 1.3732 -0.4840 35 1 1.4871 2.0842 -0.5430 36 1 2.2555 1.7492 1.0272 37 1 1.6406 0.1532 2.6425 38 1 3.5385 -2.0659 3.0445 39 1 1.7936 -2.1561 3.3846 40 1 2.8088 -0.1397 7.1557 41 1 3.0278 -1.7628 7.8527 42 1 4.7654 0.4649 10.2157 43 1 3.8708 -3.5524 6.3275 44 1 3.5234 -3.3689 4.5914 45 1 1.0955 -3.2779 5.0871 46 1 1.4430 -3.4615 6.8231 47 1 5.2548 -1.7843 -0.2877 48 1 3.8773 -2.9299 -0.1661 49 1 3.5980 -2.7385 -2.4683 50 1 4.8395 -1.4532 -2.5516 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364426078.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:40 Heat of formation + Delta-G solvation = 17.917736 kcal Electronic energy + Delta-G solvation = -29722.068776 eV Core-core repulsion = 25752.225108 eV Total energy + Delta-G solvation = -3969.843668 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.01389 -40.66325 -38.10992 -37.89198 -36.63933 -35.12710 -34.63994 -32.73118 -32.11942 -30.03080 -29.54547 -28.64377 -27.43561 -25.28086 -24.77427 -24.15567 -23.21323 -20.95859 -20.28274 -19.72819 -18.81189 -18.32077 -17.99704 -17.36638 -17.12470 -16.69278 -16.49101 -16.34701 -15.92518 -15.70839 -15.51028 -15.31797 -14.92499 -14.72890 -14.40229 -14.33490 -14.15999 -13.98470 -13.58035 -13.57014 -13.51064 -13.17632 -13.07623 -12.99288 -12.76046 -12.74149 -12.66417 -12.51508 -12.45417 -12.17020 -12.14724 -12.04098 -11.82378 -11.63628 -11.51140 -11.20173 -10.74487 -10.57103 -10.49300 -9.94431 -9.44643 -9.25056 -8.16100 -6.27830 1.40458 1.43187 1.51372 1.71156 1.85420 1.95424 2.13834 2.32143 2.46158 3.07705 3.15688 3.18824 3.37179 3.45933 3.73620 3.86365 3.99105 4.06082 4.08687 4.14715 4.15709 4.33397 4.35557 4.43269 4.49434 4.54498 4.61338 4.62846 4.68964 4.84530 4.86932 4.90383 4.91471 5.01770 5.05913 5.08344 5.11691 5.15422 5.23174 5.34203 5.37469 5.42287 5.46085 5.64354 5.89934 5.96532 6.14323 6.16343 6.42479 6.62332 6.80172 6.87593 7.37940 7.60336 8.90329 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010148 B = 0.003134 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2758.428325 B = 8933.005534 C =10124.744355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.044 4.044 3 C -0.127 4.127 4 C 0.093 3.907 5 H 0.106 0.894 6 N -0.672 5.672 7 C 0.053 3.947 8 C 0.500 3.500 9 O -0.577 6.577 10 N -0.599 5.599 11 C 0.261 3.739 12 C -0.538 4.538 13 H 0.052 0.948 14 C 0.012 3.988 15 N -0.926 5.926 16 Si 0.955 3.045 17 H -0.284 1.284 18 H -0.279 1.279 19 H -0.264 1.264 20 C 0.114 3.886 21 C -0.037 4.037 22 C 0.246 3.754 23 N -0.490 5.490 24 C -0.171 4.171 25 H 0.105 0.895 26 C -0.139 4.139 27 C 0.046 3.954 28 O -0.382 6.382 29 C 0.019 3.981 30 H 0.097 0.903 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.349 0.651 38 H 0.110 0.890 39 H 0.095 0.905 40 H 0.004 0.996 41 H 0.033 0.967 42 H 0.265 0.735 43 H 0.081 0.919 44 H 0.106 0.894 45 H 0.138 0.862 46 H 0.119 0.881 47 H 0.074 0.926 48 H 0.086 0.914 49 H 0.079 0.921 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.579 -6.597 -20.460 22.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.044 4.044 3 C -0.184 4.184 4 C -0.016 4.016 5 H 0.123 0.877 6 N -0.305 5.305 7 C -0.079 4.079 8 C 0.289 3.711 9 O -0.456 6.456 10 N -0.331 5.331 11 C 0.140 3.860 12 C -0.577 4.577 13 H 0.070 0.930 14 C -0.187 4.187 15 N -0.566 5.566 16 Si 0.780 3.220 17 H -0.210 1.210 18 H -0.204 1.204 19 H -0.188 1.188 20 C -0.011 4.011 21 C -0.078 4.078 22 C -0.072 4.072 23 N -0.168 5.168 24 C -0.190 4.190 25 H 0.122 0.878 26 C -0.177 4.177 27 C -0.030 4.030 28 O -0.301 6.301 29 C -0.040 4.040 30 H 0.114 0.886 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.170 0.830 38 H 0.128 0.872 39 H 0.112 0.888 40 H 0.022 0.978 41 H 0.051 0.949 42 H 0.074 0.926 43 H 0.099 0.901 44 H 0.124 0.876 45 H 0.156 0.844 46 H 0.137 0.863 47 H 0.092 0.908 48 H 0.105 0.895 49 H 0.097 0.903 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.917 -7.325 -20.680 23.003 hybrid contribution 0.390 0.523 0.968 1.167 sum -6.527 -6.802 -19.712 21.850 Atomic orbital electron populations 1.21815 0.92227 1.02940 1.02646 1.21950 0.95776 0.94598 0.92098 1.21666 1.00318 0.93930 1.02448 1.23072 0.95312 0.97358 0.85867 0.87670 1.60144 1.48669 1.20687 1.00993 1.21921 1.04030 0.94024 0.87919 1.21219 0.76250 0.86785 0.86842 1.90675 1.52408 1.16862 1.85641 1.48077 1.69146 1.06534 1.09314 1.18759 0.94633 0.93178 0.79428 1.21772 0.94313 1.40898 1.00751 0.92995 1.25692 1.01974 0.95307 0.95764 1.70016 1.35973 1.43750 1.06844 0.85606 0.80509 0.78434 0.77409 1.21028 1.20416 1.18842 1.21499 0.95620 0.79311 1.04646 1.19839 1.00331 0.80146 1.07498 1.29181 0.91684 0.94926 0.91360 1.81276 1.10077 1.14307 1.11139 1.24533 0.94963 1.00915 0.98627 0.87758 1.22362 1.00940 0.99475 0.94898 1.24305 0.90494 0.91867 0.96335 1.88451 1.43153 1.57973 1.40484 1.23991 0.97332 0.99524 0.83110 0.88597 0.91552 0.91959 0.91116 0.92422 0.91914 0.91827 0.83024 0.87194 0.88772 0.97833 0.94860 0.92632 0.90092 0.87607 0.84446 0.86287 0.90759 0.89510 0.90283 0.88867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.36 71.98 0.67 -1.18 16 2 C -0.04 -0.73 1.41 -60.05 -0.08 -0.81 16 3 C -0.13 -2.53 8.60 71.98 0.62 -1.91 16 4 C 0.09 1.54 3.46 36.60 0.13 1.67 16 5 H 0.11 1.27 7.43 -2.39 -0.02 1.25 16 6 N -0.67 -15.02 5.51 -540.56 -2.98 -18.00 16 7 C 0.05 1.12 4.62 85.56 0.39 1.52 16 8 C 0.50 17.10 7.71 87.66 0.68 17.78 16 9 O -0.58 -26.46 15.78 -3.03 -0.05 -26.51 16 10 N -0.60 -20.49 2.46 -826.14 -2.03 -22.52 16 11 C 0.26 12.37 5.16 85.63 0.44 12.81 16 12 C -0.54 -28.93 9.39 25.60 0.24 -28.69 16 13 H 0.05 2.79 7.81 -2.91 -0.02 2.76 16 14 C 0.01 0.65 5.46 84.66 0.46 1.11 16 15 N -0.93 -53.51 13.29 21.45 0.28 -53.23 16 16 Si 0.95 43.71 29.54 68.60 2.03 45.74 16 17 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 18 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 19 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 20 C 0.11 2.59 5.17 86.38 0.45 3.04 16 21 C -0.04 -0.60 6.03 28.79 0.17 -0.43 16 22 C 0.25 4.93 15.43 89.44 1.38 6.31 16 23 N -0.49 -12.86 18.54 20.01 0.37 -12.49 16 24 C -0.17 -3.18 4.12 -17.96 -0.07 -3.25 16 25 H 0.10 2.44 5.34 -2.39 -0.01 2.43 16 26 C -0.14 -2.10 6.86 31.18 0.21 -1.88 16 27 C 0.05 0.68 7.77 72.94 0.57 1.24 16 28 O -0.38 -7.97 11.48 -141.40 -1.62 -9.59 16 29 C 0.02 0.33 3.99 22.70 0.09 0.42 16 30 H 0.10 1.35 7.39 -2.38 -0.02 1.34 16 31 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.06 0.83 8.00 -2.39 -0.02 0.81 16 33 H 0.07 0.76 7.93 -2.39 -0.02 0.74 16 34 H 0.06 1.27 6.04 -2.39 -0.01 1.25 16 35 H 0.06 1.13 7.90 -2.39 -0.02 1.11 16 36 H 0.06 1.44 7.50 -2.38 -0.02 1.43 16 37 H 0.35 8.27 8.29 -89.70 -0.74 7.52 16 38 H 0.11 2.10 7.40 -2.39 -0.02 2.08 16 39 H 0.09 1.24 7.18 -2.39 -0.02 1.22 16 40 H 0.00 0.20 7.42 -2.39 -0.02 0.18 16 41 H 0.03 1.56 8.07 -2.39 -0.02 1.54 16 42 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 43 H 0.08 2.10 8.07 -2.39 -0.02 2.08 16 44 H 0.11 1.77 6.44 -2.38 -0.02 1.76 16 45 H 0.14 1.41 7.22 -2.39 -0.02 1.39 16 46 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 47 H 0.07 1.16 8.14 -2.39 -0.02 1.15 16 48 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 49 H 0.08 0.90 8.14 -2.39 -0.02 0.89 16 50 H 0.09 1.24 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -74.53 405.05 2.56 -71.97 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: 0.21 Total: 16.87 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: 6.35 Total: 7.75 kcal Atomic # 7 Polarization: -101.88 SS G_CDS: -4.35 Total: -106.23 kcal Atomic # 8 Polarization: -34.43 SS G_CDS: -1.67 Total: -36.10 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -74.53 2.56 -71.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364426078.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.888 kcal (2) G-P(sol) polarization free energy of solvation -74.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds