Wall clock time and date at job start Tue Mar 31 2020 20:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30612 * 125.42000 * 2 1 4 4 C 1.33695 * 108.99034 * 180.02562 * 3 2 1 5 5 C 1.50708 * 126.27027 * 180.02562 * 4 3 2 6 6 C 1.36337 * 107.45538 * 359.97438 * 4 3 2 7 7 C 1.46720 * 126.64307 * 180.02562 * 6 4 3 8 8 O 1.21687 * 120.00432 * 352.99218 * 7 6 4 9 9 N 1.34782 * 119.99981 * 172.99418 * 7 6 4 10 10 C 1.46925 * 120.62779 * 4.77629 * 9 7 6 11 11 C 1.53198 * 108.77395 * 233.63438 * 10 9 7 12 12 C 1.53043 * 109.30978 * 305.36299 * 11 10 9 13 13 C 1.53078 * 109.65725 * 61.30384 * 12 11 10 14 14 H 1.09004 * 109.62246 * 178.83028 * 13 12 11 15 15 C 1.52995 * 109.38997 * 58.72048 * 13 12 11 16 16 C 1.46923 * 120.63189 * 184.80211 * 9 7 6 17 17 H 1.09002 * 109.58706 * 246.29983 * 16 9 7 18 18 C 1.52997 * 109.58631 * 6.57874 * 16 9 7 19 19 C 1.52998 * 109.47253 * 178.15124 * 18 16 9 20 20 N 1.46497 * 109.47347 * 174.90940 * 19 18 16 21 21 C 1.36939 * 120.00163 * 179.97438 * 20 19 18 22 22 H 1.08005 * 119.99915 * 359.97438 * 21 20 19 23 23 C 1.38813 * 120.00199 * 179.97438 * 21 20 19 24 24 N 1.31616 * 119.99983 * 180.02562 * 23 21 20 25 25 Si 1.86802 * 120.00074 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.46971 * 89.99335 * 25 23 21 27 27 H 1.48496 * 109.47442 * 209.99914 * 25 23 21 28 28 H 1.48508 * 109.46898 * 329.99764 * 25 23 21 29 29 O 1.33664 * 125.41939 * 180.31062 * 2 1 3 30 30 H 1.08999 * 109.47158 * 89.97901 * 1 2 3 31 31 H 1.09003 * 109.46827 * 209.97703 * 1 2 3 32 32 H 1.08994 * 109.46847 * 329.97566 * 1 2 3 33 33 H 1.08997 * 109.47077 * 269.95219 * 5 4 3 34 34 H 1.09000 * 109.47180 * 29.95700 * 5 4 3 35 35 H 1.09003 * 109.46585 * 149.95566 * 5 4 3 36 36 H 1.09002 * 109.59154 * 353.41781 * 10 9 7 37 37 H 1.09003 * 109.58799 * 113.70520 * 10 9 7 38 38 H 1.08998 * 109.50185 * 65.31362 * 11 10 9 39 39 H 1.08996 * 109.49438 * 185.41861 * 11 10 9 40 40 H 1.08999 * 109.45680 * 181.38303 * 12 11 10 41 41 H 1.08999 * 109.46284 * 301.35870 * 12 11 10 42 42 H 1.09000 * 109.47264 * 300.24862 * 15 13 12 43 43 H 1.08995 * 109.47735 * 60.24928 * 15 13 12 44 44 H 1.09003 * 109.47114 * 180.25363 * 15 13 12 45 45 H 1.08997 * 109.47254 * 58.14726 * 18 16 9 46 46 H 1.09005 * 109.47333 * 298.14473 * 18 16 9 47 47 H 1.09009 * 109.46662 * 294.90678 * 19 18 16 48 48 H 1.08993 * 109.47614 * 54.90654 * 19 18 16 49 49 H 0.97003 * 120.00413 * 359.97438 * 20 19 18 50 50 H 0.97003 * 119.99786 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2641 1.0644 0.0000 4 6 3.5464 0.6862 -0.0006 5 6 4.7453 1.5995 -0.0002 6 6 3.5708 -0.6769 -0.0003 7 6 4.7636 -1.5314 -0.0003 8 8 5.8673 -1.0355 -0.1290 9 7 4.6367 -2.8656 0.1423 10 6 3.3077 -3.4899 0.1939 11 6 3.2144 -4.3470 1.4602 12 6 4.3774 -5.3415 1.4850 13 6 5.7052 -4.5804 1.5137 14 1 6.5326 -5.2891 1.5523 15 6 5.7468 -3.6780 2.7485 16 6 5.8247 -3.7233 0.2497 17 1 5.8890 -4.3698 -0.6255 18 6 7.0797 -2.8526 0.3373 19 6 8.3110 -3.7469 0.4953 20 7 9.5215 -2.9226 0.4572 21 6 10.7530 -3.5085 0.5807 22 1 10.8319 -4.5783 0.7067 23 6 11.9000 -2.7275 0.5441 24 7 13.0837 -3.2907 0.6623 25 14 11.7636 -0.8772 0.3269 26 1 11.6639 -0.2285 1.6590 27 1 12.9672 -0.3718 -0.3810 28 1 10.5511 -0.5604 -0.4700 29 8 2.2817 -1.0893 -0.0059 30 1 -0.3633 0.0004 -1.0276 31 1 -0.3633 -0.8902 0.5135 32 1 -0.3633 0.8897 0.5142 33 1 5.0346 1.8197 -1.0278 34 1 4.4949 2.5276 0.5136 35 1 5.5735 1.1116 0.5138 36 1 2.5409 -2.7156 0.2195 37 1 3.1642 -4.1172 -0.6859 38 1 3.2663 -3.7045 2.3392 39 1 2.2701 -4.8914 1.4622 40 1 4.2995 -5.9692 2.3728 41 1 4.3392 -5.9673 0.5934 42 1 4.9184 -2.9707 2.7097 43 1 5.6617 -4.2882 3.6476 44 1 6.6900 -3.1320 2.7678 45 1 7.0011 -2.1873 1.1971 46 1 7.1754 -2.2604 -0.5729 47 1 8.2587 -4.2718 1.4493 48 1 8.3398 -4.4725 -0.3174 49 1 9.4507 -1.9618 0.3444 50 1 13.8852 -2.7449 0.6371 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479518299.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:19 Heat of formation + Delta-G solvation = 19.887294 kcal Electronic energy + Delta-G solvation = -30784.157602 eV Core-core repulsion = 26814.399340 eV Total energy + Delta-G solvation = -3969.758262 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.76728 -40.79664 -38.00930 -35.82916 -35.33885 -33.73726 -33.10682 -32.74161 -31.07468 -29.64854 -29.00781 -27.64292 -26.82371 -25.06258 -23.88163 -22.65616 -22.32797 -21.63132 -20.83217 -20.51930 -18.86377 -17.66752 -17.41746 -17.13208 -16.37839 -16.23803 -15.50153 -15.06053 -14.79284 -14.53547 -14.32849 -14.19698 -14.06316 -13.69871 -13.53591 -13.42555 -13.35464 -13.11461 -13.05556 -12.97636 -12.79619 -12.50025 -12.35506 -12.00280 -11.77233 -11.44261 -11.32077 -11.27238 -11.19966 -10.96804 -10.83680 -10.81606 -10.50448 -10.39385 -10.21438 -10.05543 -9.50260 -9.14745 -9.06979 -8.77763 -8.62836 -7.10832 -5.67981 -3.01896 0.58136 2.02717 2.13384 2.77946 2.95934 3.47734 3.54075 3.54416 3.55964 4.21574 4.45167 4.51945 4.65177 4.67922 4.69801 4.81237 4.84161 4.85667 4.87109 5.03841 5.15145 5.19115 5.28844 5.35254 5.45370 5.53206 5.55722 5.58757 5.61520 5.64504 5.68800 5.70032 5.77382 5.84138 5.94334 5.99050 6.00958 6.11309 6.13998 6.16764 6.18212 6.37376 6.44502 6.55337 6.93285 7.01413 7.15178 7.35114 7.94976 8.09546 8.51986 9.32539 10.05694 10.26930 11.50646 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013291 B = 0.003592 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.114742 B = 7793.051560 C = 9554.547708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.205 3.795 3 N -0.488 5.488 4 C 0.082 3.918 5 C -0.082 4.082 6 C -0.116 4.116 7 C 0.603 3.397 8 O -0.493 6.493 9 N -0.595 5.595 10 C 0.091 3.909 11 C -0.135 4.135 12 C -0.116 4.116 13 C -0.105 4.105 14 H 0.093 0.907 15 C -0.148 4.148 16 C 0.158 3.842 17 H 0.077 0.923 18 C -0.126 4.126 19 C 0.154 3.846 20 N -0.755 5.755 21 C -0.240 4.240 22 H 0.089 0.911 23 C 0.002 3.998 24 N -0.937 5.937 25 Si 0.883 3.117 26 H -0.285 1.285 27 H -0.292 1.292 28 H -0.274 1.274 29 O -0.184 6.184 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.103 0.897 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.096 0.904 36 H 0.105 0.895 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.050 0.950 43 H 0.052 0.948 44 H 0.067 0.933 45 H 0.074 0.926 46 H 0.092 0.908 47 H 0.025 0.975 48 H 0.021 0.979 49 H 0.362 0.638 50 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.600 1.847 0.173 31.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.000 4.000 3 N -0.219 5.219 4 C -0.042 4.042 5 C -0.139 4.139 6 C -0.170 4.170 7 C 0.389 3.611 8 O -0.370 6.370 9 N -0.327 5.327 10 C -0.031 4.031 11 C -0.173 4.173 12 C -0.153 4.153 13 C -0.124 4.124 14 H 0.111 0.889 15 C -0.205 4.205 16 C 0.056 3.944 17 H 0.095 0.905 18 C -0.164 4.164 19 C 0.026 3.974 20 N -0.400 5.400 21 C -0.370 4.370 22 H 0.106 0.894 23 C -0.193 4.193 24 N -0.586 5.586 25 Si 0.713 3.287 26 H -0.211 1.211 27 H -0.218 1.218 28 H -0.200 1.200 29 O -0.073 6.073 30 H 0.115 0.885 31 H 0.110 0.890 32 H 0.121 0.879 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.114 0.886 36 H 0.122 0.878 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.086 0.914 45 H 0.092 0.908 46 H 0.110 0.890 47 H 0.043 0.957 48 H 0.038 0.962 49 H 0.195 0.805 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -31.085 2.467 0.125 31.183 hybrid contribution 0.089 0.496 -0.160 0.529 sum -30.996 2.963 -0.035 31.137 Atomic orbital electron populations 1.20366 0.81017 1.05452 1.05018 1.26691 0.96793 0.79447 0.97057 1.70354 1.01695 1.29983 1.19838 1.22073 0.93388 0.91322 0.97368 1.20400 0.92145 0.97388 1.03920 1.23247 0.82145 0.95293 1.16341 1.16606 0.85369 0.81344 0.77742 1.91000 1.22756 1.73645 1.49599 1.47995 1.07950 1.05403 1.71368 1.22279 0.84281 0.98062 0.98518 1.21942 0.99005 0.98291 0.98032 1.21585 0.94086 0.97404 1.02255 1.21597 0.98159 0.97644 0.95030 0.88882 1.21898 1.02559 0.99484 0.96573 1.21389 0.84005 0.91407 0.97603 0.90496 1.22379 0.91578 0.97467 1.04991 1.20751 0.85528 0.93117 0.98022 1.42697 1.02192 1.05441 1.89674 1.19072 0.82058 0.94178 1.41664 0.89355 1.24658 0.95097 0.97446 1.02141 1.69709 0.96780 1.34452 1.57653 0.86545 0.76903 0.87215 0.78008 1.21127 1.21845 1.19993 1.84580 1.16601 1.35831 1.70249 0.88507 0.89021 0.87850 0.89808 0.90552 0.88586 0.87778 0.91078 0.91134 0.90870 0.91486 0.91739 0.93129 0.92881 0.91360 0.90751 0.88984 0.95687 0.96151 0.80478 0.93187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.24 10.51 36.01 0.38 0.13 16 2 C 0.21 1.91 8.32 -12.79 -0.11 1.81 16 3 N -0.49 -5.88 11.26 -7.07 -0.08 -5.96 16 4 C 0.08 1.07 7.16 -82.46 -0.59 0.48 16 5 C -0.08 -0.97 9.81 36.01 0.35 -0.62 16 6 C -0.12 -1.49 6.88 -36.84 -0.25 -1.74 16 7 C 0.60 8.56 7.51 -12.83 -0.10 8.46 16 8 O -0.49 -8.35 10.42 5.20 0.05 -8.30 16 9 N -0.59 -7.27 2.42 -166.73 -0.40 -7.67 16 10 C 0.09 0.82 6.33 -3.71 -0.02 0.80 16 11 C -0.13 -1.07 5.74 -26.61 -0.15 -1.22 16 12 C -0.12 -1.02 5.42 -26.67 -0.14 -1.16 16 13 C -0.11 -1.22 2.26 -90.48 -0.20 -1.42 16 14 H 0.09 1.15 6.86 -51.93 -0.36 0.79 16 15 C -0.15 -1.82 8.19 37.15 0.30 -1.52 16 16 C 0.16 2.10 2.73 -67.60 -0.18 1.91 16 17 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 18 C -0.13 -2.17 2.75 -26.73 -0.07 -2.24 16 19 C 0.15 3.12 5.68 -4.04 -0.02 3.09 16 20 N -0.75 -19.22 5.41 -59.91 -0.32 -19.54 16 21 C -0.24 -7.11 10.47 -15.06 -0.16 -7.27 16 22 H 0.09 2.77 8.06 -52.48 -0.42 2.35 16 23 C 0.00 0.06 5.50 -17.43 -0.10 -0.04 16 24 N -0.94 -30.43 13.97 55.49 0.78 -29.65 16 25 Si 0.88 23.34 27.74 -169.99 -4.71 18.62 16 26 H -0.28 -7.45 7.11 56.52 0.40 -7.04 16 27 H -0.29 -7.74 7.11 56.52 0.40 -7.33 16 28 H -0.27 -6.97 6.52 56.52 0.37 -6.60 16 29 O -0.18 -1.91 7.27 4.42 0.03 -1.88 16 30 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.10 1.27 6.64 -51.93 -0.34 0.92 16 36 H 0.11 0.93 3.78 -55.04 -0.21 0.72 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.62 6.34 -51.93 -0.33 0.30 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.05 0.62 5.97 -51.93 -0.31 0.30 16 43 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.07 1.01 6.14 -51.93 -0.32 0.69 16 45 H 0.07 1.35 5.51 -51.93 -0.29 1.07 16 46 H 0.09 1.77 6.26 -51.93 -0.32 1.44 16 47 H 0.03 0.50 6.61 -51.92 -0.34 0.16 16 48 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.36 9.24 5.53 -40.82 -0.23 9.01 16 50 H 0.26 7.97 8.31 -40.82 -0.34 7.63 16 LS Contribution 378.19 15.07 5.70 5.70 Total: -1.00 -35.56 378.19 -7.74 -43.30 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -7.71 Total: 5.93 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: -1.07 Total: -0.55 kcal Atomic # 7 Polarization: -62.79 SS G_CDS: -0.03 Total: -62.82 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.09 Total: -10.18 kcal Atomic # 14 Polarization: 23.34 SS G_CDS: -4.71 Total: 18.62 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.56 -7.74 -43.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479518299.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.192 kcal (2) G-P(sol) polarization free energy of solvation -35.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds