Wall clock time and date at job start Tue Mar 31 2020 20:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30612 * 125.42000 * 2 1 4 4 C 1.33695 * 108.99034 * 180.02562 * 3 2 1 5 5 C 1.50708 * 126.27027 * 180.02562 * 4 3 2 6 6 C 1.36337 * 107.45538 * 359.97438 * 4 3 2 7 7 C 1.46720 * 126.64307 * 180.02562 * 6 4 3 8 8 O 1.21687 * 120.00432 * 352.99218 * 7 6 4 9 9 N 1.34782 * 119.99981 * 172.99418 * 7 6 4 10 10 C 1.46925 * 120.62779 * 4.77629 * 9 7 6 11 11 C 1.53198 * 108.77395 * 233.63438 * 10 9 7 12 12 C 1.53043 * 109.30978 * 305.36299 * 11 10 9 13 13 C 1.53078 * 109.65725 * 61.30384 * 12 11 10 14 14 H 1.09004 * 109.62246 * 178.83028 * 13 12 11 15 15 C 1.52995 * 109.38997 * 58.72048 * 13 12 11 16 16 C 1.46923 * 120.63189 * 184.80211 * 9 7 6 17 17 H 1.09002 * 109.58706 * 246.29983 * 16 9 7 18 18 C 1.52997 * 109.58631 * 6.57874 * 16 9 7 19 19 C 1.52998 * 109.47253 * 178.15124 * 18 16 9 20 20 N 1.46497 * 109.47347 * 174.90940 * 19 18 16 21 21 C 1.36939 * 120.00163 * 179.97438 * 20 19 18 22 22 H 1.08005 * 119.99915 * 359.97438 * 21 20 19 23 23 C 1.38813 * 120.00199 * 179.97438 * 21 20 19 24 24 N 1.31616 * 119.99983 * 180.02562 * 23 21 20 25 25 Si 1.86802 * 120.00074 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.46971 * 89.99335 * 25 23 21 27 27 H 1.48496 * 109.47442 * 209.99914 * 25 23 21 28 28 H 1.48508 * 109.46898 * 329.99764 * 25 23 21 29 29 O 1.33664 * 125.41939 * 180.31062 * 2 1 3 30 30 H 1.08999 * 109.47158 * 89.97901 * 1 2 3 31 31 H 1.09003 * 109.46827 * 209.97703 * 1 2 3 32 32 H 1.08994 * 109.46847 * 329.97566 * 1 2 3 33 33 H 1.08997 * 109.47077 * 269.95219 * 5 4 3 34 34 H 1.09000 * 109.47180 * 29.95700 * 5 4 3 35 35 H 1.09003 * 109.46585 * 149.95566 * 5 4 3 36 36 H 1.09002 * 109.59154 * 353.41781 * 10 9 7 37 37 H 1.09003 * 109.58799 * 113.70520 * 10 9 7 38 38 H 1.08998 * 109.50185 * 65.31362 * 11 10 9 39 39 H 1.08996 * 109.49438 * 185.41861 * 11 10 9 40 40 H 1.08999 * 109.45680 * 181.38303 * 12 11 10 41 41 H 1.08999 * 109.46284 * 301.35870 * 12 11 10 42 42 H 1.09000 * 109.47264 * 300.24862 * 15 13 12 43 43 H 1.08995 * 109.47735 * 60.24928 * 15 13 12 44 44 H 1.09003 * 109.47114 * 180.25363 * 15 13 12 45 45 H 1.08997 * 109.47254 * 58.14726 * 18 16 9 46 46 H 1.09005 * 109.47333 * 298.14473 * 18 16 9 47 47 H 1.09009 * 109.46662 * 294.90678 * 19 18 16 48 48 H 1.08993 * 109.47614 * 54.90654 * 19 18 16 49 49 H 0.97003 * 120.00413 * 359.97438 * 20 19 18 50 50 H 0.97003 * 119.99786 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2641 1.0644 0.0000 4 6 3.5464 0.6862 -0.0006 5 6 4.7453 1.5995 -0.0002 6 6 3.5708 -0.6769 -0.0003 7 6 4.7636 -1.5314 -0.0003 8 8 5.8673 -1.0355 -0.1290 9 7 4.6367 -2.8656 0.1423 10 6 3.3077 -3.4899 0.1939 11 6 3.2144 -4.3470 1.4602 12 6 4.3774 -5.3415 1.4850 13 6 5.7052 -4.5804 1.5137 14 1 6.5326 -5.2891 1.5523 15 6 5.7468 -3.6780 2.7485 16 6 5.8247 -3.7233 0.2497 17 1 5.8890 -4.3698 -0.6255 18 6 7.0797 -2.8526 0.3373 19 6 8.3110 -3.7469 0.4953 20 7 9.5215 -2.9226 0.4572 21 6 10.7530 -3.5085 0.5807 22 1 10.8319 -4.5783 0.7067 23 6 11.9000 -2.7275 0.5441 24 7 13.0837 -3.2907 0.6623 25 14 11.7636 -0.8772 0.3269 26 1 11.6639 -0.2285 1.6590 27 1 12.9672 -0.3718 -0.3810 28 1 10.5511 -0.5604 -0.4700 29 8 2.2817 -1.0893 -0.0059 30 1 -0.3633 0.0004 -1.0276 31 1 -0.3633 -0.8902 0.5135 32 1 -0.3633 0.8897 0.5142 33 1 5.0346 1.8197 -1.0278 34 1 4.4949 2.5276 0.5136 35 1 5.5735 1.1116 0.5138 36 1 2.5409 -2.7156 0.2195 37 1 3.1642 -4.1172 -0.6859 38 1 3.2663 -3.7045 2.3392 39 1 2.2701 -4.8914 1.4622 40 1 4.2995 -5.9692 2.3728 41 1 4.3392 -5.9673 0.5934 42 1 4.9184 -2.9707 2.7097 43 1 5.6617 -4.2882 3.6476 44 1 6.6900 -3.1320 2.7678 45 1 7.0011 -2.1873 1.1971 46 1 7.1754 -2.2604 -0.5729 47 1 8.2587 -4.2718 1.4493 48 1 8.3398 -4.4725 -0.3174 49 1 9.4507 -1.9618 0.3444 50 1 13.8852 -2.7449 0.6371 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479518299.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:18 Heat of formation + Delta-G solvation = -5.497386 kcal Electronic energy + Delta-G solvation = -30785.258364 eV Core-core repulsion = 26814.399340 eV Total energy + Delta-G solvation = -3970.859024 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -44.59508 -41.81433 -39.01905 -37.22058 -36.52410 -34.99065 -34.22909 -33.69573 -32.91439 -30.33029 -30.28020 -28.79848 -27.75205 -26.28390 -25.14273 -24.04586 -23.11807 -22.89655 -22.06929 -21.51342 -19.83579 -19.64431 -18.37803 -18.10406 -17.41628 -17.12309 -16.75494 -16.38181 -16.08254 -15.79967 -15.45698 -15.13035 -15.07774 -14.99456 -14.78166 -14.49376 -14.40106 -14.20392 -13.96148 -13.83749 -13.80150 -13.51142 -13.41526 -13.23596 -13.01311 -12.94669 -12.58717 -12.43964 -12.37047 -12.12094 -12.07602 -11.98716 -11.84279 -11.78406 -11.66995 -11.36650 -11.19594 -10.97371 -10.36176 -10.00379 -9.57675 -9.30295 -8.05468 -5.37694 -0.30123 1.18778 1.29267 1.36002 1.37047 1.45975 1.84415 1.97805 2.45810 2.86851 3.25884 3.28242 3.59422 3.61944 3.72812 3.84689 3.89042 4.02595 4.10068 4.19753 4.27852 4.36130 4.39465 4.49830 4.51721 4.58533 4.60731 4.62674 4.64480 4.68153 4.77518 4.78932 4.82340 4.83980 4.93779 4.98303 5.06303 5.13090 5.15938 5.21249 5.26453 5.33235 5.36784 5.42098 5.48449 5.66627 5.73017 6.16798 6.20162 6.50111 6.91829 7.05301 7.83454 8.02140 9.16081 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013291 B = 0.003592 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.114742 B = 7793.051560 C = 9554.547708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.223 3.777 3 N -0.518 5.518 4 C 0.072 3.928 5 C -0.079 4.079 6 C -0.134 4.134 7 C 0.596 3.404 8 O -0.533 6.533 9 N -0.590 5.590 10 C 0.086 3.914 11 C -0.128 4.128 12 C -0.110 4.110 13 C -0.104 4.104 14 H 0.084 0.916 15 C -0.143 4.143 16 C 0.162 3.838 17 H 0.086 0.914 18 C -0.106 4.106 19 C 0.153 3.847 20 N -0.761 5.761 21 C -0.233 4.233 22 H 0.061 0.939 23 C -0.061 4.061 24 N -0.982 5.982 25 Si 0.951 3.049 26 H -0.278 1.278 27 H -0.290 1.290 28 H -0.261 1.261 29 O -0.177 6.177 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.113 0.887 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.110 0.890 37 H 0.088 0.912 38 H 0.061 0.939 39 H 0.104 0.896 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.051 0.949 43 H 0.066 0.934 44 H 0.036 0.964 45 H 0.061 0.939 46 H 0.071 0.929 47 H 0.030 0.970 48 H 0.022 0.978 49 H 0.363 0.637 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.719 1.725 0.109 35.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.018 3.982 3 N -0.248 5.248 4 C -0.052 4.052 5 C -0.136 4.136 6 C -0.188 4.188 7 C 0.384 3.616 8 O -0.413 6.413 9 N -0.322 5.322 10 C -0.034 4.034 11 C -0.166 4.166 12 C -0.148 4.148 13 C -0.123 4.123 14 H 0.102 0.898 15 C -0.200 4.200 16 C 0.059 3.941 17 H 0.104 0.896 18 C -0.144 4.144 19 C 0.026 3.974 20 N -0.406 5.406 21 C -0.363 4.363 22 H 0.079 0.921 23 C -0.253 4.253 24 N -0.632 5.632 25 Si 0.778 3.222 26 H -0.204 1.204 27 H -0.216 1.216 28 H -0.186 1.186 29 O -0.066 6.066 30 H 0.136 0.864 31 H 0.136 0.864 32 H 0.132 0.868 33 H 0.103 0.897 34 H 0.107 0.893 35 H 0.097 0.903 36 H 0.127 0.873 37 H 0.106 0.894 38 H 0.080 0.920 39 H 0.122 0.878 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.070 0.930 43 H 0.085 0.915 44 H 0.055 0.945 45 H 0.079 0.921 46 H 0.090 0.910 47 H 0.048 0.952 48 H 0.040 0.960 49 H 0.195 0.805 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -35.281 2.321 0.064 35.357 hybrid contribution 1.224 0.466 -0.129 1.316 sum -34.057 2.786 -0.065 34.171 Atomic orbital electron populations 1.20759 0.77003 1.07269 1.06830 1.27869 0.98455 0.78478 0.93386 1.70392 1.01405 1.31238 1.21808 1.22255 0.94120 0.91668 0.97152 1.20343 0.91646 0.97679 1.03912 1.22851 0.82744 0.94919 1.18305 1.16824 0.85410 0.81953 0.77377 1.90971 1.24327 1.74428 1.51573 1.48053 1.08886 1.04761 1.70468 1.22550 0.82395 0.98457 1.00012 1.21930 1.00027 0.97852 0.96798 1.21565 0.92262 0.97414 1.03518 1.21583 1.00037 0.97173 0.93493 0.89788 1.21835 1.00844 0.99574 0.97735 1.21258 0.82854 0.90926 0.99035 0.89616 1.22101 0.92176 0.96832 1.03317 1.20923 0.85095 0.93225 0.98109 1.42790 1.02389 1.05875 1.89541 1.19079 0.83873 0.93132 1.40259 0.92125 1.25435 0.94723 1.02381 1.02753 1.69867 0.97592 1.36306 1.59478 0.85461 0.77221 0.81205 0.78268 1.20409 1.21645 1.18640 1.84581 1.15626 1.36019 1.70417 0.86410 0.86358 0.86808 0.89660 0.89344 0.90344 0.87290 0.89389 0.92033 0.87772 0.90198 0.90523 0.93012 0.91496 0.94495 0.92078 0.91035 0.95159 0.95952 0.80472 0.93254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.25 10.51 71.24 0.75 0.50 16 2 C 0.22 3.59 8.32 88.29 0.73 4.33 16 3 N -0.52 -11.82 11.26 -291.05 -3.28 -15.09 16 4 C 0.07 1.85 7.16 41.83 0.30 2.15 16 5 C -0.08 -1.94 9.81 71.24 0.70 -1.24 16 6 C -0.13 -3.36 6.88 24.04 0.17 -3.20 16 7 C 0.60 17.02 7.51 86.46 0.65 17.67 16 8 O -0.53 -18.78 10.42 -4.31 -0.04 -18.83 16 9 N -0.59 -13.79 2.42 -799.64 -1.94 -15.72 16 10 C 0.09 1.32 6.33 86.36 0.55 1.86 16 11 C -0.13 -1.57 5.74 30.67 0.18 -1.39 16 12 C -0.11 -1.58 5.42 30.63 0.17 -1.42 16 13 C -0.10 -2.27 2.26 -10.71 -0.02 -2.29 16 14 H 0.08 2.00 6.86 -2.38 -0.02 1.98 16 15 C -0.14 -3.44 8.19 71.98 0.59 -2.85 16 16 C 0.16 4.18 2.73 44.97 0.12 4.31 16 17 H 0.09 2.08 8.14 -2.39 -0.02 2.07 16 18 C -0.11 -3.74 2.75 30.59 0.08 -3.65 16 19 C 0.15 6.33 5.68 86.38 0.49 6.82 16 20 N -0.76 -39.43 5.41 -343.45 -1.86 -41.29 16 21 C -0.23 -14.14 10.47 84.03 0.88 -13.26 16 22 H 0.06 3.95 8.06 -2.91 -0.02 3.93 16 23 C -0.06 -3.82 5.50 84.86 0.47 -3.36 16 24 N -0.98 -65.28 13.97 21.65 0.30 -64.98 16 25 Si 0.95 49.12 27.74 68.60 1.90 51.02 16 26 H -0.28 -13.98 7.11 99.48 0.71 -13.28 16 27 H -0.29 -14.82 7.11 99.48 0.71 -14.11 16 28 H -0.26 -12.81 6.52 99.48 0.65 -12.17 16 29 O -0.18 -3.30 7.27 -7.09 -0.05 -3.35 16 30 H 0.12 0.10 8.14 -2.39 -0.02 0.08 16 31 H 0.12 -0.09 8.14 -2.39 -0.02 -0.11 16 32 H 0.11 0.30 8.14 -2.39 -0.02 0.29 16 33 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.08 2.20 6.64 -2.39 -0.02 2.19 16 36 H 0.11 1.60 3.78 -51.73 -0.20 1.41 16 37 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.06 0.90 6.34 -2.39 -0.02 0.88 16 39 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.05 1.22 5.97 -2.39 -0.01 1.21 16 43 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.04 1.11 6.14 -2.39 -0.01 1.09 16 45 H 0.06 2.31 5.51 -2.39 -0.01 2.30 16 46 H 0.07 2.84 6.26 -2.38 -0.01 2.83 16 47 H 0.03 1.24 6.61 -2.38 -0.02 1.22 16 48 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 49 H 0.36 18.66 5.53 -92.71 -0.51 18.14 16 50 H 0.26 16.32 8.31 -92.71 -0.77 15.55 16 Total: -1.00 -79.99 378.19 2.04 -77.95 By element: Atomic # 1 Polarization: 25.10 SS G_CDS: 0.21 Total: 25.31 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: 6.79 Total: 4.98 kcal Atomic # 7 Polarization: -130.32 SS G_CDS: -6.77 Total: -137.08 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: -0.10 Total: -22.17 kcal Atomic # 14 Polarization: 49.12 SS G_CDS: 1.90 Total: 51.02 kcal Total: -79.99 2.04 -77.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479518299.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.451 kcal (2) G-P(sol) polarization free energy of solvation -79.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds