Wall clock time and date at job start Tue Mar 31 2020 20:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.34212 * 125.43959 * 2 1 4 4 C 1.33652 * 110.90850 * 179.76291 * 3 2 1 5 5 C 1.50700 * 125.79971 * 180.26725 * 4 3 2 6 6 C 1.36408 * 108.39747 * 0.39318 * 4 3 2 7 7 C 1.47377 * 127.19471 * 179.89139 * 6 4 3 8 8 O 1.21613 * 120.00226 * 269.68836 * 7 6 4 9 9 N 1.34777 * 120.00047 * 89.68119 * 7 6 4 10 10 C 1.46496 * 120.00153 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.47389 * 180.02562 * 10 9 7 12 12 N 1.46898 * 109.47492 * 179.97438 * 11 10 9 13 13 C 1.46900 * 111.00355 * 170.00073 * 12 11 10 14 14 C 1.53235 * 109.34263 * 187.25389 * 13 12 11 15 15 N 1.47086 * 108.51886 * 306.16546 * 14 13 12 16 16 C 1.36930 * 120.88084 * 231.18344 * 15 14 13 17 17 H 1.08003 * 120.00034 * 27.13616 * 16 15 14 18 18 C 1.38810 * 119.99851 * 206.85031 * 16 15 14 19 19 N 1.31624 * 120.00188 * 17.17041 * 18 16 15 20 20 Si 1.86805 * 119.99970 * 197.16526 * 18 16 15 21 21 H 1.48502 * 109.46715 * 90.00616 * 20 18 16 22 22 H 1.48499 * 109.46981 * 210.00183 * 20 18 16 23 23 H 1.48489 * 109.47231 * 330.00643 * 20 18 16 24 24 C 1.47081 * 118.23455 * 51.46100 * 15 14 13 25 25 C 1.46901 * 110.99711 * 294.29927 * 12 11 10 26 26 C 1.34182 * 125.43605 * 180.02562 * 2 1 3 27 27 C 1.50700 * 127.02427 * 0.02562 * 26 2 1 28 28 H 1.08998 * 109.46977 * 269.99411 * 1 2 3 29 29 H 1.09002 * 109.47302 * 29.99444 * 1 2 3 30 30 H 1.08997 * 109.47376 * 149.99731 * 1 2 3 31 31 H 1.08997 * 109.47597 * 270.14541 * 5 4 3 32 32 H 1.09000 * 109.47294 * 30.15024 * 5 4 3 33 33 H 1.09000 * 109.47006 * 150.14464 * 5 4 3 34 34 H 0.97000 * 119.99712 * 359.97438 * 9 7 6 35 35 H 1.08998 * 109.47256 * 59.99569 * 10 9 7 36 36 H 1.09005 * 109.47154 * 299.99644 * 10 9 7 37 37 H 1.09006 * 109.47130 * 59.99283 * 11 10 9 38 38 H 1.09008 * 109.47089 * 299.99963 * 11 10 9 39 39 H 1.09002 * 109.49350 * 67.29049 * 13 12 11 40 40 H 1.09006 * 109.50970 * 307.22448 * 13 12 11 41 41 H 1.08998 * 109.62971 * 186.46211 * 14 13 12 42 42 H 1.09001 * 109.62881 * 65.87432 * 14 13 12 43 43 H 0.96996 * 120.00064 * 179.97438 * 19 18 16 44 44 H 1.09000 * 109.63185 * 68.25003 * 24 15 14 45 45 H 1.08998 * 109.62646 * 188.83355 * 24 15 14 46 46 H 1.09000 * 109.49497 * 292.70822 * 25 12 11 47 47 H 1.08999 * 109.49178 * 52.78806 * 25 12 11 48 48 H 1.09006 * 109.46885 * 269.97805 * 27 26 2 49 49 H 1.08999 * 109.47097 * 29.97405 * 27 26 2 50 50 H 1.08997 * 109.46846 * 149.97625 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2852 1.0935 0.0000 4 6 3.5790 0.7581 0.0052 5 6 4.7389 1.7201 0.0125 6 6 3.6710 -0.6028 -0.0001 7 6 4.9024 -1.4126 0.0005 8 8 5.4107 -1.7471 -1.0525 9 7 5.4653 -1.7822 1.1679 10 6 6.6896 -2.5866 1.1686 11 6 7.1152 -2.8667 2.6113 12 7 8.3425 -3.6738 2.6119 13 6 8.9127 -3.7640 3.9628 14 6 10.2784 -4.4553 3.8921 15 7 10.1153 -5.7422 3.1988 16 6 10.5907 -6.9023 3.7493 17 1 10.6852 -6.9922 4.8215 18 6 10.9456 -7.9650 2.9298 19 7 11.1520 -7.7651 1.6453 20 14 11.1305 -9.6787 3.6499 21 1 9.8267 -10.3866 3.5839 22 1 12.1446 -10.4355 2.8726 23 1 11.5670 -9.5763 5.0655 24 6 9.4335 -5.7490 1.8956 25 6 8.0958 -5.0075 2.0476 26 6 2.2850 -1.0933 -0.0005 27 6 1.8308 -2.5302 -0.0017 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3634 0.8900 -0.5137 30 1 -0.3634 -0.8899 -0.5138 31 1 5.0217 1.9563 -1.0134 32 1 4.4490 2.6350 0.5293 33 1 5.5852 1.2649 0.5269 34 1 5.0601 -1.5149 2.0078 35 1 7.4821 -2.0425 0.6547 36 1 6.5047 -3.5302 0.6551 37 1 6.3225 -3.4109 3.1248 38 1 7.3000 -1.9233 3.1253 39 1 8.2449 -4.3421 4.6016 40 1 9.0331 -2.7620 4.3747 41 1 10.6541 -4.6279 4.9007 42 1 10.9782 -3.8280 3.3399 43 1 11.4003 -8.5076 1.0727 44 1 10.0536 -5.2436 1.1552 45 1 9.2503 -6.7772 1.5836 46 1 7.4394 -5.5683 2.7130 47 1 7.6239 -4.9072 1.0702 48 1 1.7213 -2.8775 1.0258 49 1 0.8727 -2.6080 -0.5155 50 1 2.5699 -3.1444 -0.5160 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479933409.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:33 Heat of formation + Delta-G solvation = 1.684066 kcal Electronic energy + Delta-G solvation = -28824.142293 eV Core-core repulsion = 24853.594680 eV Total energy + Delta-G solvation = -3970.547613 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.88502 -39.56428 -38.16867 -35.40152 -34.58150 -33.96240 -33.33511 -31.43154 -30.11499 -29.91558 -29.14396 -28.23259 -26.06278 -24.86560 -23.64912 -22.92366 -22.46897 -21.30711 -20.35633 -19.47445 -19.09989 -17.43419 -16.90191 -16.76568 -16.11447 -15.90733 -15.52444 -14.94494 -14.64887 -14.44375 -14.30116 -14.03730 -13.87628 -13.67593 -13.53503 -13.42110 -13.36885 -13.28772 -13.07042 -13.04349 -12.91281 -12.70723 -12.51264 -12.47822 -11.65222 -11.58813 -11.43560 -11.28229 -11.05637 -10.75301 -10.46142 -10.33587 -10.20442 -10.05448 -9.75074 -9.66080 -9.61633 -9.11532 -8.59477 -8.50099 -7.89558 -6.66413 -5.77110 -3.18854 1.30053 1.90423 2.40816 2.42897 3.08293 3.38346 3.45056 3.46521 4.11014 4.37706 4.50506 4.52780 4.54770 4.75103 4.81876 4.95347 4.99205 5.01831 5.08205 5.16192 5.20866 5.33194 5.40010 5.40432 5.42363 5.42598 5.51161 5.57863 5.63273 5.81924 5.85273 5.90490 5.95636 6.04974 6.10652 6.15558 6.20274 6.31070 6.34287 6.53903 6.67877 6.80165 6.92318 7.23967 7.34357 7.54005 7.63820 7.69739 7.81865 8.08656 8.44382 9.21878 9.85218 10.43880 11.31575 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.022050 B = 0.002035 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.536956 B =13756.830656 C =14256.525404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.016 4.016 3 O -0.172 6.172 4 C 0.042 3.958 5 C -0.079 4.079 6 C -0.225 4.225 7 C 0.591 3.409 8 O -0.527 6.527 9 N -0.719 5.719 10 C 0.120 3.880 11 C 0.045 3.955 12 N -0.529 5.529 13 C 0.046 3.954 14 C 0.148 3.852 15 N -0.596 5.596 16 C -0.253 4.253 17 H 0.066 0.934 18 C 0.001 3.999 19 N -0.902 5.902 20 Si 0.903 3.097 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.279 1.279 24 C 0.178 3.822 25 C 0.030 3.970 26 C -0.146 4.146 27 C -0.086 4.086 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.400 0.600 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.032 0.968 38 H 0.073 0.927 39 H 0.028 0.972 40 H 0.062 0.938 41 H 0.056 0.944 42 H 0.026 0.974 43 H 0.254 0.746 44 H 0.028 0.972 45 H 0.089 0.911 46 H 0.026 0.974 47 H 0.064 0.936 48 H 0.071 0.929 49 H 0.070 0.930 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.160 18.724 -0.533 28.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.065 4.065 3 O -0.070 6.070 4 C -0.010 4.010 5 C -0.135 4.135 6 C -0.229 4.229 7 C 0.376 3.624 8 O -0.403 6.403 9 N -0.371 5.371 10 C -0.003 4.003 11 C -0.084 4.084 12 N -0.254 5.254 13 C -0.083 4.083 14 C 0.022 3.978 15 N -0.319 5.319 16 C -0.382 4.382 17 H 0.084 0.916 18 C -0.198 4.198 19 N -0.547 5.547 20 Si 0.733 3.267 21 H -0.215 1.215 22 H -0.217 1.217 23 H -0.205 1.205 24 C 0.052 3.948 25 C -0.099 4.099 26 C -0.147 4.147 27 C -0.143 4.143 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.102 0.898 33 H 0.109 0.891 34 H 0.233 0.767 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.050 0.950 38 H 0.091 0.909 39 H 0.046 0.954 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.044 0.956 43 H 0.064 0.936 44 H 0.046 0.954 45 H 0.107 0.893 46 H 0.044 0.956 47 H 0.082 0.918 48 H 0.090 0.910 49 H 0.089 0.911 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -20.455 18.832 -1.706 27.856 hybrid contribution -0.631 -1.331 1.201 1.901 sum -21.086 17.500 -0.505 27.407 Atomic orbital electron populations 1.20316 0.84724 1.04135 1.03589 1.21973 0.93761 0.83214 1.07510 1.83650 1.15944 1.35207 1.72159 1.22474 0.83266 0.93306 1.01920 1.20442 0.91516 0.97178 1.04401 1.21007 0.93943 0.93162 1.14832 1.17248 0.82356 0.78991 0.83785 1.90839 1.63226 1.54924 1.31337 1.45967 1.28099 1.54750 1.08306 1.21431 0.85485 0.95735 0.97682 1.22191 0.92629 0.98530 0.95013 1.61872 1.25040 1.15678 1.22830 1.22627 0.98567 0.99160 0.87944 1.20980 0.92383 0.88004 0.96480 1.44150 1.65305 1.01896 1.20550 1.19190 1.37421 0.90521 0.91081 0.91644 1.25042 0.99459 0.99245 0.96028 1.70028 1.50025 1.30363 1.04259 0.86281 0.77404 0.84692 0.78339 1.21516 1.21733 1.20485 1.20964 0.87498 0.99242 0.87093 1.23092 1.01128 0.87898 0.97744 1.21056 0.90030 0.96492 1.07153 1.20226 1.01521 0.90119 1.02406 0.89986 0.90473 0.89239 0.89240 0.89819 0.89056 0.76663 0.90262 0.90937 0.94982 0.90860 0.95363 0.91986 0.92548 0.95584 0.93571 0.95374 0.89315 0.95565 0.91802 0.91008 0.91142 0.91185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.37 10.21 36.00 0.37 0.00 16 2 C -0.02 -0.15 7.28 -35.74 -0.26 -0.41 16 3 O -0.17 -1.77 10.52 7.66 0.08 -1.69 16 4 C 0.04 0.43 7.37 -34.97 -0.26 0.17 16 5 C -0.08 -0.58 10.24 36.01 0.37 -0.21 16 6 C -0.22 -2.68 6.07 -103.28 -0.63 -3.30 16 7 C 0.59 8.10 7.25 -12.54 -0.09 8.01 16 8 O -0.53 -9.45 17.11 5.27 0.09 -9.36 16 9 N -0.72 -8.26 5.55 -61.40 -0.34 -8.60 16 10 C 0.12 1.61 5.61 -4.04 -0.02 1.59 16 11 C 0.05 0.60 5.08 -3.83 -0.02 0.58 16 12 N -0.53 -9.18 4.63 -234.02 -1.08 -10.26 16 13 C 0.05 0.81 5.62 -3.70 -0.02 0.79 16 14 C 0.15 3.14 6.69 -3.60 -0.02 3.11 16 15 N -0.60 -15.15 3.03 -171.73 -0.52 -15.67 16 16 C -0.25 -6.98 9.63 -15.06 -0.15 -7.12 16 17 H 0.07 1.77 7.88 -52.48 -0.41 1.36 16 18 C 0.00 0.02 4.93 -17.43 -0.09 -0.06 16 19 N -0.90 -26.45 11.16 55.49 0.62 -25.83 16 20 Si 0.90 21.81 29.59 -169.99 -5.03 16.78 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 C 0.18 4.35 5.45 -3.36 -0.02 4.33 16 25 C 0.03 0.59 5.48 -3.46 -0.02 0.58 16 26 C -0.15 -1.53 6.38 -102.49 -0.65 -2.18 16 27 C -0.09 -0.75 10.15 36.01 0.37 -0.38 16 28 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.09 0.35 7.14 -51.93 -0.37 -0.02 16 31 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.09 0.65 7.93 -51.93 -0.41 0.24 16 34 H 0.40 3.55 8.46 -40.82 -0.35 3.21 16 35 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.07 1.11 6.40 -51.93 -0.33 0.78 16 37 H 0.03 0.42 8.12 -51.93 -0.42 -0.01 16 38 H 0.07 0.84 7.97 -51.92 -0.41 0.43 16 39 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.91 7.99 -51.93 -0.41 0.49 16 41 H 0.06 1.14 7.95 -51.93 -0.41 0.73 16 42 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 44 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.09 2.40 6.12 -51.93 -0.32 2.08 16 46 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.06 1.16 6.16 -51.93 -0.32 0.84 16 48 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.07 0.46 7.15 -51.93 -0.37 0.09 16 50 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 403.48 15.07 6.08 6.08 Total: -1.00 -33.99 403.48 -9.58 -43.57 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -8.33 Total: -0.50 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: -1.14 Total: 5.48 kcal Atomic # 7 Polarization: -59.04 SS G_CDS: -1.33 Total: -60.37 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.17 Total: -11.04 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.78 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.99 -9.58 -43.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479933409.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.255 kcal (2) G-P(sol) polarization free energy of solvation -33.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds