Wall clock time and date at job start Tue Mar 31 2020 20:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.34212 * 125.43959 * 2 1 4 4 C 1.33652 * 110.90850 * 179.76291 * 3 2 1 5 5 C 1.50700 * 125.79971 * 180.26725 * 4 3 2 6 6 C 1.36408 * 108.39747 * 0.39318 * 4 3 2 7 7 C 1.47377 * 127.19471 * 179.89139 * 6 4 3 8 8 O 1.21613 * 120.00226 * 269.68836 * 7 6 4 9 9 N 1.34777 * 120.00047 * 89.68119 * 7 6 4 10 10 C 1.46496 * 120.00153 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.47389 * 180.02562 * 10 9 7 12 12 N 1.46898 * 109.47492 * 179.97438 * 11 10 9 13 13 C 1.46900 * 111.00355 * 170.00073 * 12 11 10 14 14 C 1.53235 * 109.34263 * 187.25389 * 13 12 11 15 15 N 1.47086 * 108.51886 * 306.16546 * 14 13 12 16 16 C 1.36930 * 120.88084 * 231.18344 * 15 14 13 17 17 H 1.08003 * 120.00034 * 27.13616 * 16 15 14 18 18 C 1.38810 * 119.99851 * 206.85031 * 16 15 14 19 19 N 1.31624 * 120.00188 * 17.17041 * 18 16 15 20 20 Si 1.86805 * 119.99970 * 197.16526 * 18 16 15 21 21 H 1.48502 * 109.46715 * 90.00616 * 20 18 16 22 22 H 1.48499 * 109.46981 * 210.00183 * 20 18 16 23 23 H 1.48489 * 109.47231 * 330.00643 * 20 18 16 24 24 C 1.47081 * 118.23455 * 51.46100 * 15 14 13 25 25 C 1.46901 * 110.99711 * 294.29927 * 12 11 10 26 26 C 1.34182 * 125.43605 * 180.02562 * 2 1 3 27 27 C 1.50700 * 127.02427 * 0.02562 * 26 2 1 28 28 H 1.08998 * 109.46977 * 269.99411 * 1 2 3 29 29 H 1.09002 * 109.47302 * 29.99444 * 1 2 3 30 30 H 1.08997 * 109.47376 * 149.99731 * 1 2 3 31 31 H 1.08997 * 109.47597 * 270.14541 * 5 4 3 32 32 H 1.09000 * 109.47294 * 30.15024 * 5 4 3 33 33 H 1.09000 * 109.47006 * 150.14464 * 5 4 3 34 34 H 0.97000 * 119.99712 * 359.97438 * 9 7 6 35 35 H 1.08998 * 109.47256 * 59.99569 * 10 9 7 36 36 H 1.09005 * 109.47154 * 299.99644 * 10 9 7 37 37 H 1.09006 * 109.47130 * 59.99283 * 11 10 9 38 38 H 1.09008 * 109.47089 * 299.99963 * 11 10 9 39 39 H 1.09002 * 109.49350 * 67.29049 * 13 12 11 40 40 H 1.09006 * 109.50970 * 307.22448 * 13 12 11 41 41 H 1.08998 * 109.62971 * 186.46211 * 14 13 12 42 42 H 1.09001 * 109.62881 * 65.87432 * 14 13 12 43 43 H 0.96996 * 120.00064 * 179.97438 * 19 18 16 44 44 H 1.09000 * 109.63185 * 68.25003 * 24 15 14 45 45 H 1.08998 * 109.62646 * 188.83355 * 24 15 14 46 46 H 1.09000 * 109.49497 * 292.70822 * 25 12 11 47 47 H 1.08999 * 109.49178 * 52.78806 * 25 12 11 48 48 H 1.09006 * 109.46885 * 269.97805 * 27 26 2 49 49 H 1.08999 * 109.47097 * 29.97405 * 27 26 2 50 50 H 1.08997 * 109.46846 * 149.97625 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2852 1.0935 0.0000 4 6 3.5790 0.7581 0.0052 5 6 4.7389 1.7201 0.0125 6 6 3.6710 -0.6028 -0.0001 7 6 4.9024 -1.4126 0.0005 8 8 5.4107 -1.7471 -1.0525 9 7 5.4653 -1.7822 1.1679 10 6 6.6896 -2.5866 1.1686 11 6 7.1152 -2.8667 2.6113 12 7 8.3425 -3.6738 2.6119 13 6 8.9127 -3.7640 3.9628 14 6 10.2784 -4.4553 3.8921 15 7 10.1153 -5.7422 3.1988 16 6 10.5907 -6.9023 3.7493 17 1 10.6852 -6.9922 4.8215 18 6 10.9456 -7.9650 2.9298 19 7 11.1520 -7.7651 1.6453 20 14 11.1305 -9.6787 3.6499 21 1 9.8267 -10.3866 3.5839 22 1 12.1446 -10.4355 2.8726 23 1 11.5670 -9.5763 5.0655 24 6 9.4335 -5.7490 1.8956 25 6 8.0958 -5.0075 2.0476 26 6 2.2850 -1.0933 -0.0005 27 6 1.8308 -2.5302 -0.0017 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3634 0.8900 -0.5137 30 1 -0.3634 -0.8899 -0.5138 31 1 5.0217 1.9563 -1.0134 32 1 4.4490 2.6350 0.5293 33 1 5.5852 1.2649 0.5269 34 1 5.0601 -1.5149 2.0078 35 1 7.4821 -2.0425 0.6547 36 1 6.5047 -3.5302 0.6551 37 1 6.3225 -3.4109 3.1248 38 1 7.3000 -1.9233 3.1253 39 1 8.2449 -4.3421 4.6016 40 1 9.0331 -2.7620 4.3747 41 1 10.6541 -4.6279 4.9007 42 1 10.9782 -3.8280 3.3399 43 1 11.4003 -8.5076 1.0727 44 1 10.0536 -5.2436 1.1552 45 1 9.2503 -6.7772 1.5836 46 1 7.4394 -5.5683 2.7130 47 1 7.6239 -4.9072 1.0702 48 1 1.7213 -2.8775 1.0258 49 1 0.8727 -2.6080 -0.5155 50 1 2.5699 -3.1444 -0.5160 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479933409.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:31 Heat of formation + Delta-G solvation = -21.798770 kcal Electronic energy + Delta-G solvation = -28825.160585 eV Core-core repulsion = 24853.594680 eV Total energy + Delta-G solvation = -3971.565905 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.63002 -40.69039 -39.68478 -36.87841 -35.48203 -35.25523 -34.10437 -33.25149 -31.63569 -30.67110 -30.39475 -29.08339 -27.68124 -25.69707 -25.02462 -24.35665 -23.90981 -22.57788 -21.29558 -20.84183 -20.26158 -18.74515 -18.25905 -17.69770 -17.27598 -16.90278 -16.68763 -16.57369 -16.03274 -15.78780 -15.43020 -15.28170 -15.18776 -14.94353 -14.70993 -14.59608 -14.39354 -14.25609 -14.06367 -13.90241 -13.68524 -13.50521 -13.29189 -13.22405 -13.01595 -12.98060 -12.86374 -12.63696 -12.60096 -12.27468 -12.22096 -12.04891 -11.86986 -11.57536 -11.49208 -11.28730 -10.59872 -10.48348 -10.23282 -9.32200 -9.28762 -8.69640 -7.88183 -5.33480 0.55398 1.14441 1.35586 1.45981 1.47208 1.56462 1.72975 2.08091 2.50154 3.06850 3.27129 3.46590 3.66318 3.69128 3.81950 3.88632 4.03586 4.09549 4.28247 4.29819 4.33947 4.38690 4.43578 4.53144 4.54258 4.62522 4.63615 4.66425 4.70243 4.77220 4.80178 4.80969 4.87808 4.89544 4.96174 4.99177 5.02743 5.04213 5.18603 5.20131 5.26887 5.36654 5.50484 5.60679 5.66539 6.07210 6.12180 6.20301 6.36493 6.39814 7.07415 7.11975 7.83087 8.37483 9.18580 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.022050 B = 0.002035 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.536956 B =13756.830656 C =14256.525404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.013 4.013 3 O -0.177 6.177 4 C 0.044 3.956 5 C -0.080 4.080 6 C -0.255 4.255 7 C 0.596 3.404 8 O -0.579 6.579 9 N -0.701 5.701 10 C 0.129 3.871 11 C 0.056 3.944 12 N -0.541 5.541 13 C 0.058 3.942 14 C 0.141 3.859 15 N -0.615 5.615 16 C -0.262 4.262 17 H 0.070 0.930 18 C -0.055 4.055 19 N -0.937 5.937 20 Si 0.970 3.030 21 H -0.286 1.286 22 H -0.296 1.296 23 H -0.266 1.266 24 C 0.185 3.815 25 C 0.049 3.951 26 C -0.169 4.169 27 C -0.083 4.083 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.103 0.897 31 H 0.092 0.908 32 H 0.107 0.893 33 H 0.092 0.908 34 H 0.416 0.584 35 H 0.065 0.935 36 H 0.051 0.949 37 H 0.045 0.955 38 H 0.104 0.896 39 H 0.028 0.972 40 H 0.102 0.898 41 H 0.064 0.936 42 H 0.016 0.984 43 H 0.250 0.750 44 H -0.003 1.003 45 H 0.055 0.945 46 H 0.023 0.977 47 H 0.074 0.926 48 H 0.082 0.918 49 H 0.092 0.908 50 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.455 20.445 1.510 31.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.061 4.061 3 O -0.074 6.074 4 C -0.008 4.008 5 C -0.136 4.136 6 C -0.260 4.260 7 C 0.382 3.618 8 O -0.458 6.458 9 N -0.353 5.353 10 C 0.005 3.995 11 C -0.072 4.072 12 N -0.267 5.267 13 C -0.071 4.071 14 C 0.016 3.984 15 N -0.339 5.339 16 C -0.392 4.392 17 H 0.088 0.912 18 C -0.250 4.250 19 N -0.583 5.583 20 Si 0.798 3.202 21 H -0.213 1.213 22 H -0.223 1.223 23 H -0.191 1.191 24 C 0.059 3.941 25 C -0.080 4.080 26 C -0.170 4.170 27 C -0.140 4.140 28 H 0.117 0.883 29 H 0.106 0.894 30 H 0.121 0.879 31 H 0.110 0.890 32 H 0.126 0.874 33 H 0.110 0.890 34 H 0.253 0.747 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.123 0.877 39 H 0.047 0.953 40 H 0.120 0.880 41 H 0.082 0.918 42 H 0.034 0.966 43 H 0.059 0.941 44 H 0.015 0.985 45 H 0.073 0.927 46 H 0.042 0.958 47 H 0.092 0.908 48 H 0.101 0.899 49 H 0.111 0.889 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -22.779 20.595 0.406 30.712 hybrid contribution 0.082 -1.768 0.570 1.859 sum -22.697 18.828 0.976 29.505 Atomic orbital electron populations 1.20532 0.81831 1.05345 1.05048 1.22677 0.95273 0.82429 1.05712 1.83680 1.15971 1.35734 1.72050 1.22921 0.83975 0.93254 1.00603 1.20578 0.90517 0.97599 1.04937 1.21007 0.93794 0.93925 1.17223 1.17522 0.82512 0.78377 0.83339 1.90809 1.64793 1.57065 1.33165 1.45754 1.27204 1.53673 1.08651 1.21200 0.85785 0.94780 0.97769 1.22175 0.91078 0.99147 0.94847 1.61751 1.27550 1.14340 1.23036 1.22480 0.95920 1.00770 0.87914 1.21174 0.94846 0.86321 0.96076 1.44440 1.65589 1.03046 1.20801 1.19552 1.36592 0.91623 0.91440 0.91203 1.25848 0.99861 1.02905 0.96405 1.70200 1.51533 1.31028 1.05581 0.85227 0.77036 0.79940 0.78014 1.21252 1.22268 1.19085 1.20693 0.89435 0.97653 0.86333 1.22696 0.97790 0.88898 0.98619 1.21322 0.89613 0.97675 1.08439 1.20241 1.01763 0.88870 1.03083 0.88259 0.89427 0.87852 0.88976 0.87431 0.88968 0.74738 0.91634 0.93097 0.93642 0.87735 0.95330 0.88012 0.91798 0.96646 0.94120 0.98518 0.92665 0.95831 0.90803 0.89891 0.88950 0.93646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.53 10.21 71.24 0.73 0.19 16 2 C -0.01 -0.21 7.28 24.76 0.18 -0.03 16 3 O -0.18 -3.33 10.52 4.50 0.05 -3.28 16 4 C 0.04 0.86 7.37 25.26 0.19 1.05 16 5 C -0.08 -1.05 10.24 71.24 0.73 -0.32 16 6 C -0.26 -5.94 6.07 -18.99 -0.12 -6.06 16 7 C 0.60 16.38 7.25 86.65 0.63 17.00 16 8 O -0.58 -21.49 17.11 -4.07 -0.07 -21.56 16 9 N -0.70 -15.31 5.55 -466.42 -2.59 -17.90 16 10 C 0.13 3.35 5.61 86.38 0.48 3.83 16 11 C 0.06 1.31 5.08 86.30 0.44 1.75 16 12 N -0.54 -17.87 4.63 -894.29 -4.14 -22.01 16 13 C 0.06 1.87 5.62 86.38 0.49 2.36 16 14 C 0.14 5.87 6.69 86.35 0.58 6.45 16 15 N -0.61 -31.73 3.03 -697.23 -2.11 -33.84 16 16 C -0.26 -14.63 9.63 84.03 0.81 -13.82 16 17 H 0.07 3.76 7.88 -2.91 -0.02 3.74 16 18 C -0.06 -3.14 4.93 84.86 0.42 -2.72 16 19 N -0.94 -57.00 11.16 21.65 0.24 -56.75 16 20 Si 0.97 45.51 29.59 68.60 2.03 47.54 16 21 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 22 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 23 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 24 C 0.19 9.37 5.45 86.50 0.47 9.84 16 25 C 0.05 1.93 5.48 86.54 0.47 2.41 16 26 C -0.17 -3.37 6.38 -18.48 -0.12 -3.49 16 27 C -0.08 -1.36 10.15 71.24 0.72 -0.64 16 28 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.10 0.50 7.14 -2.39 -0.02 0.48 16 31 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.09 1.18 7.93 -2.39 -0.02 1.16 16 34 H 0.42 6.45 8.46 -92.71 -0.78 5.67 16 35 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.05 1.57 6.40 -2.38 -0.02 1.55 16 37 H 0.05 1.01 8.12 -2.38 -0.02 0.99 16 38 H 0.10 1.91 7.97 -2.38 -0.02 1.89 16 39 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.10 2.52 7.99 -2.38 -0.02 2.51 16 41 H 0.06 2.51 7.95 -2.39 -0.02 2.49 16 42 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 44 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 45 H 0.06 3.14 6.12 -2.39 -0.01 3.12 16 46 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.07 2.73 6.16 -2.39 -0.01 2.72 16 48 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 49 H 0.09 1.04 7.15 -2.39 -0.02 1.03 16 50 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -77.12 403.48 0.66 -76.46 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 0.16 Total: 13.53 kcal Atomic # 6 Polarization: 10.72 SS G_CDS: 7.10 Total: 17.82 kcal Atomic # 7 Polarization: -121.91 SS G_CDS: -8.60 Total: -130.51 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -0.02 Total: -24.83 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -77.12 0.66 -76.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479933409.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.657 kcal (2) G-P(sol) polarization free energy of solvation -77.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds