Wall clock time and date at job start Tue Mar 31 2020 19:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 110.35009 * 2 1 4 4 C 1.53991 * 110.30816 * 122.14333 * 2 1 3 5 5 N 1.47905 * 107.22505 * 120.04390 * 4 2 1 6 6 C 1.46897 * 111.00050 * 214.25344 * 5 4 2 7 7 C 1.50694 * 109.47194 * 169.99666 * 6 5 4 8 8 O 1.21297 * 120.00284 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00402 * 179.97438 * 7 6 5 10 10 C 1.37094 * 120.00292 * 180.02562 * 9 7 6 11 11 H 1.07992 * 119.99974 * 0.02562 * 10 9 7 12 12 C 1.38952 * 119.99684 * 180.02562 * 10 9 7 13 13 N 1.31411 * 120.00312 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99566 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47171 * 60.00435 * 14 12 10 16 16 H 1.48503 * 109.46899 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47565 * 299.99939 * 14 12 10 18 18 C 1.48813 * 105.67450 * 334.90354 * 5 4 2 19 19 C 1.54594 * 110.30616 * 237.86108 * 2 1 3 20 20 H 1.08998 * 110.72457 * 144.50393 * 19 2 1 21 21 N 1.46497 * 110.72610 * 21.39662 * 19 2 1 22 22 C 1.34776 * 120.00271 * 154.99922 * 21 19 2 23 23 O 1.21289 * 119.99403 * 0.02562 * 22 21 19 24 24 C 1.50702 * 120.00569 * 180.02562 * 22 21 19 25 25 C 1.54632 * 111.03155 * 292.02250 * 24 22 21 26 26 C 1.51109 * 104.72404 * 217.33107 * 25 24 22 27 27 C 1.30523 * 111.10169 * 16.43847 * 26 25 24 28 28 C 1.51100 * 111.10451 * 0.02562 * 27 26 25 29 29 H 1.09001 * 109.47265 * 299.30633 * 1 2 3 30 30 H 1.09001 * 109.47162 * 59.30743 * 1 2 3 31 31 H 1.09003 * 109.47139 * 179.31045 * 1 2 3 32 32 H 1.08998 * 109.46981 * 180.68473 * 3 2 1 33 33 H 1.08994 * 109.47621 * 300.69226 * 3 2 1 34 34 H 1.09006 * 109.46811 * 60.69351 * 3 2 1 35 35 H 1.09002 * 109.91707 * 239.49450 * 4 2 1 36 36 H 1.09002 * 109.91668 * 0.59241 * 4 2 1 37 37 H 1.09000 * 109.47143 * 290.00333 * 6 5 4 38 38 H 1.09011 * 109.46966 * 49.99945 * 6 5 4 39 39 H 0.97004 * 119.99442 * 0.02562 * 9 7 6 40 40 H 0.96997 * 119.99965 * 179.97438 * 13 12 10 41 41 H 1.08998 * 110.51915 * 280.54171 * 18 5 4 42 42 H 1.09009 * 110.83927 * 157.56590 * 18 5 4 43 43 H 0.97001 * 120.00461 * 335.00411 * 21 19 2 44 44 H 1.08996 * 110.90968 * 56.03179 * 24 22 21 45 45 H 1.08997 * 110.38901 * 336.14533 * 25 24 22 46 46 H 1.09006 * 110.38817 * 98.52461 * 25 24 22 47 47 H 1.07992 * 124.44601 * 196.41576 * 26 25 24 48 48 H 1.07999 * 124.44820 * 180.02562 * 27 26 25 49 49 H 1.09000 * 110.38482 * 224.75061 * 28 27 26 50 50 H 1.09003 * 110.38837 * 102.37828 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0621 1.4345 0.0000 4 6 2.0645 -0.7684 1.2228 5 7 2.8799 -1.8918 0.7121 6 6 2.7616 -3.0675 1.5849 7 6 3.3982 -4.2572 0.9139 8 8 3.9007 -4.1376 -0.1836 9 7 3.4094 -5.4542 1.5333 10 6 3.9890 -6.5364 0.9231 11 1 4.4371 -6.4297 -0.0537 12 6 4.0000 -7.7705 1.5616 13 7 3.4543 -7.9004 2.7499 14 14 4.7904 -9.2449 0.7304 15 1 6.2255 -8.9596 0.4765 16 1 4.6701 -10.4337 1.6123 17 1 4.1036 -9.5139 -0.5584 18 6 2.3584 -2.1796 -0.6516 19 6 2.0666 -0.7713 -1.2277 20 1 2.9788 -0.3093 -1.6050 21 7 1.0500 -0.8422 -2.2802 22 6 1.4214 -0.9976 -3.5664 23 8 2.5973 -1.0792 -3.8524 24 6 0.3758 -1.0700 -4.6493 25 6 -0.4555 -2.3686 -4.5321 26 6 -0.7092 -2.7924 -5.9602 27 6 0.1000 -2.1816 -6.7824 28 6 1.0285 -1.2493 -6.0397 29 1 -0.3634 0.5030 0.8961 30 1 -0.3633 0.5246 -0.8837 31 1 -0.3633 -1.0276 -0.0124 32 1 3.1519 1.4178 -0.0123 33 1 1.6967 1.9576 -0.8836 34 1 1.7168 1.9500 0.8962 35 1 2.6813 -0.1100 1.8346 36 1 1.2323 -1.1518 1.8132 37 1 3.2665 -2.8703 2.5305 38 1 1.7082 -3.2765 1.7721 39 1 3.0072 -5.5499 2.4108 40 1 3.4617 -8.7620 3.1954 41 1 1.4433 -2.7690 -0.5942 42 1 3.1084 -2.6935 -1.2531 43 1 0.1096 -0.7773 -2.0515 44 1 -0.2670 -0.1900 -4.6288 45 1 0.1106 -3.1354 -4.0033 46 1 -1.3981 -2.1713 -4.0215 47 1 -1.4609 -3.5070 -6.2610 48 1 0.1051 -2.3240 -7.8529 49 1 1.0949 -0.2905 -6.5539 50 1 2.0173 -1.6973 -5.9409 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485567288.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:00 Heat of formation + Delta-G solvation = -69.388945 kcal Electronic energy + Delta-G solvation = -29927.775342 eV Core-core repulsion = 25954.145772 eV Total energy + Delta-G solvation = -3973.629570 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.76405 -40.71197 -39.68354 -38.38392 -36.27007 -35.61150 -34.28758 -33.33425 -31.16726 -29.96849 -29.13779 -28.46365 -28.29617 -26.75135 -25.21686 -23.63655 -22.34670 -21.14452 -20.92536 -20.12831 -19.83056 -19.68495 -18.50161 -17.69106 -17.48597 -17.00384 -16.65235 -16.43136 -16.15263 -15.99741 -15.79587 -15.33167 -15.11882 -14.75549 -14.45141 -14.35617 -14.18277 -13.88344 -13.62825 -13.51669 -13.22725 -13.16506 -13.06724 -13.06299 -12.79667 -12.70554 -12.54987 -12.49996 -12.46529 -12.22469 -12.15757 -12.09223 -11.84805 -11.75800 -11.58855 -11.49446 -10.90410 -10.29958 -10.08362 -9.97866 -9.83382 -9.33732 -8.49911 -5.98580 1.33683 1.36246 1.38275 1.49231 1.56304 2.00725 2.06343 2.26332 2.87483 3.16513 3.28441 3.45808 3.48603 3.58834 3.64951 3.87088 3.92429 4.14009 4.20235 4.22514 4.30292 4.34652 4.35061 4.43456 4.49963 4.55107 4.67620 4.73631 4.75875 4.76972 4.81454 4.86439 4.89971 4.97927 5.04434 5.05853 5.10854 5.16206 5.20470 5.31980 5.37682 5.39902 5.48553 5.59069 5.81413 5.92358 5.96235 6.10072 6.50831 6.57799 7.09923 7.23224 7.51733 8.09203 8.67320 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009409 B = 0.003356 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2975.295947 B = 8340.697084 C =10572.500986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.072 4.072 3 C -0.130 4.130 4 C 0.040 3.960 5 N -0.514 5.514 6 C 0.051 3.949 7 C 0.434 3.566 8 O -0.617 6.617 9 N -0.570 5.570 10 C -0.335 4.335 11 H 0.074 0.926 12 C -0.009 4.009 13 N -0.918 5.918 14 Si 0.990 3.010 15 H -0.274 1.274 16 H -0.266 1.266 17 H -0.273 1.273 18 C 0.042 3.958 19 C 0.153 3.847 20 H 0.074 0.926 21 N -0.705 5.705 22 C 0.514 3.486 23 O -0.584 6.584 24 C -0.108 4.108 25 C -0.092 4.092 26 C -0.170 4.170 27 C -0.168 4.168 28 C -0.094 4.094 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.054 0.946 32 H 0.046 0.954 33 H 0.062 0.938 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.066 0.934 37 H 0.114 0.886 38 H 0.073 0.927 39 H 0.397 0.603 40 H 0.279 0.721 41 H 0.031 0.969 42 H 0.060 0.940 43 H 0.416 0.584 44 H 0.140 0.860 45 H 0.054 0.946 46 H 0.107 0.893 47 H 0.145 0.855 48 H 0.143 0.857 49 H 0.087 0.913 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.783 18.537 -7.235 25.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.073 4.073 3 C -0.188 4.188 4 C -0.087 4.087 5 N -0.239 5.239 6 C -0.081 4.081 7 C 0.222 3.778 8 O -0.503 6.503 9 N -0.208 5.208 10 C -0.465 4.465 11 H 0.092 0.908 12 C -0.209 4.209 13 N -0.559 5.559 14 Si 0.814 3.186 15 H -0.199 1.199 16 H -0.190 1.190 17 H -0.199 1.199 18 C -0.087 4.087 19 C 0.046 3.954 20 H 0.092 0.908 21 N -0.359 5.359 22 C 0.302 3.698 23 O -0.464 6.464 24 C -0.129 4.129 25 C -0.129 4.129 26 C -0.188 4.188 27 C -0.186 4.186 28 C -0.132 4.132 29 H 0.105 0.895 30 H 0.097 0.903 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.101 0.899 35 H 0.112 0.888 36 H 0.084 0.916 37 H 0.131 0.869 38 H 0.090 0.910 39 H 0.231 0.769 40 H 0.088 0.912 41 H 0.049 0.951 42 H 0.078 0.922 43 H 0.257 0.743 44 H 0.158 0.842 45 H 0.072 0.928 46 H 0.126 0.874 47 H 0.163 0.837 48 H 0.161 0.839 49 H 0.106 0.894 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.094 18.528 -7.999 24.615 hybrid contribution -0.364 -1.602 0.292 1.669 sum -14.458 16.926 -7.707 23.557 Atomic orbital electron populations 1.21936 0.91634 1.02386 1.04233 1.21630 0.97566 0.96172 0.91922 1.21817 1.00597 0.93242 1.03117 1.23249 0.96273 0.92410 0.96777 1.64525 1.52088 1.05561 1.01705 1.22008 1.00202 0.88624 0.97236 1.20830 0.84832 0.84997 0.87132 1.90491 1.51710 1.85008 1.23132 1.41887 1.51902 1.07587 1.19383 1.19584 1.35394 0.88401 1.03108 0.90753 1.25994 0.97556 1.00976 0.96403 1.69654 1.44788 1.27078 1.14359 0.85035 0.78545 0.76999 0.78030 1.19892 1.19029 1.19856 1.23487 0.97566 0.96642 0.91024 1.21783 0.91583 0.94378 0.87611 0.90801 1.46007 1.10839 1.73647 1.05411 1.21116 0.89891 0.74391 0.84424 1.90718 1.21398 1.51010 1.83267 1.22231 0.95912 1.02008 0.92731 1.21370 1.00235 0.94476 0.96814 1.23410 1.00548 1.00706 0.94151 1.23435 0.96312 0.98594 1.00264 1.21314 0.98545 1.00361 0.92938 0.89546 0.90321 0.92678 0.93475 0.91939 0.89947 0.88769 0.91583 0.86854 0.90968 0.76921 0.91172 0.95092 0.92191 0.74342 0.84209 0.92777 0.87436 0.83698 0.83921 0.89449 0.92130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 7.02 71.98 0.51 -1.29 16 2 C -0.07 -1.39 0.95 -51.30 -0.05 -1.43 16 3 C -0.13 -2.11 8.22 71.98 0.59 -1.52 16 4 C 0.04 0.92 6.02 86.44 0.52 1.44 16 5 N -0.51 -17.64 5.27 -886.78 -4.67 -22.31 16 6 C 0.05 1.83 5.52 85.56 0.47 2.30 16 7 C 0.43 21.66 7.50 87.65 0.66 22.32 16 8 O -0.62 -36.08 13.11 -3.08 -0.04 -36.12 16 9 N -0.57 -30.19 5.29 -306.99 -1.62 -31.81 16 10 C -0.34 -19.67 9.68 84.04 0.81 -18.85 16 11 H 0.07 4.70 7.16 -2.91 -0.02 4.67 16 12 C -0.01 -0.50 5.50 84.93 0.47 -0.04 16 13 N -0.92 -50.13 13.05 21.66 0.28 -49.85 16 14 Si 0.99 44.09 29.55 68.60 2.03 46.12 16 15 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 16 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 17 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 18 C 0.04 1.56 4.99 86.59 0.43 1.99 16 19 C 0.15 4.31 2.85 46.20 0.13 4.45 16 20 H 0.07 2.56 7.26 -2.39 -0.02 2.54 16 21 N -0.70 -16.13 4.92 -436.84 -2.15 -18.28 16 22 C 0.51 14.15 7.06 87.66 0.62 14.77 16 23 O -0.58 -22.72 15.15 -3.06 -0.05 -22.76 16 24 C -0.11 -2.05 3.55 -10.42 -0.04 -2.08 16 25 C -0.09 -1.63 6.37 30.53 0.19 -1.44 16 26 C -0.17 -2.86 10.78 26.27 0.28 -2.57 16 27 C -0.17 -2.97 10.77 26.27 0.28 -2.68 16 28 C -0.09 -2.00 6.18 30.54 0.19 -1.81 16 29 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.08 0.71 6.99 -2.39 -0.02 0.69 16 31 H 0.05 0.76 7.96 -2.39 -0.02 0.74 16 32 H 0.05 0.93 8.13 -2.39 -0.02 0.91 16 33 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 35 H 0.09 1.94 7.68 -2.39 -0.02 1.92 16 36 H 0.07 1.28 7.10 -2.39 -0.02 1.27 16 37 H 0.11 3.60 8.14 -2.39 -0.02 3.58 16 38 H 0.07 2.26 7.81 -2.38 -0.02 2.24 16 39 H 0.40 19.75 7.90 -92.71 -0.73 19.02 16 40 H 0.28 14.23 8.31 -92.71 -0.77 13.46 16 41 H 0.03 1.14 8.02 -2.39 -0.02 1.13 16 42 H 0.06 3.00 6.01 -2.38 -0.01 2.98 16 43 H 0.42 6.38 5.93 -92.71 -0.55 5.83 16 44 H 0.14 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.05 1.30 7.88 -2.39 -0.02 1.28 16 46 H 0.11 1.24 8.14 -2.38 -0.02 1.22 16 47 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 48 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 49 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 50 H 0.06 1.75 6.96 -2.39 -0.02 1.73 16 Total: -1.00 -79.33 394.84 -0.48 -79.81 By element: Atomic # 1 Polarization: 41.99 SS G_CDS: -0.33 Total: 41.66 kcal Atomic # 6 Polarization: 7.47 SS G_CDS: 6.07 Total: 13.55 kcal Atomic # 7 Polarization: -114.09 SS G_CDS: -8.16 Total: -122.25 kcal Atomic # 8 Polarization: -58.79 SS G_CDS: -0.09 Total: -58.88 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -79.33 -0.48 -79.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485567288.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.421 kcal (2) G-P(sol) polarization free energy of solvation -79.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds