Wall clock time and date at job start Tue Mar 31 2020 19:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 110.36537 * 2 1 4 4 C 1.54378 * 110.32286 * 122.18270 * 2 1 3 5 5 N 1.48560 * 104.69549 * 142.81047 * 4 2 1 6 6 C 1.46905 * 110.99577 * 200.89794 * 5 4 2 7 7 C 1.50698 * 109.47165 * 169.99909 * 6 5 4 8 8 O 1.21299 * 119.99948 * 0.02562 * 7 6 5 9 9 N 1.34780 * 120.00283 * 180.02562 * 7 6 5 10 10 C 1.37097 * 120.00035 * 180.02562 * 9 7 6 11 11 H 1.08004 * 120.00014 * 0.02562 * 10 9 7 12 12 C 1.38946 * 120.00002 * 179.97438 * 10 9 7 13 13 N 1.31415 * 120.00263 * 179.97438 * 12 10 9 14 14 Si 1.86800 * 120.00019 * 0.02562 * 12 10 9 15 15 H 1.48494 * 109.47227 * 89.99768 * 14 12 10 16 16 H 1.48497 * 109.47059 * 209.99979 * 14 12 10 17 17 H 1.48504 * 109.46819 * 329.99747 * 14 12 10 18 18 C 1.48555 * 104.22165 * 320.45136 * 5 4 2 19 19 C 1.54377 * 104.59533 * 39.48960 * 18 5 4 20 20 H 1.09004 * 110.32290 * 217.24846 * 19 18 5 21 21 N 1.46501 * 110.32718 * 95.13948 * 19 18 5 22 22 C 1.34779 * 119.99725 * 86.45173 * 21 19 18 23 23 O 1.21277 * 119.99975 * 0.02562 * 22 21 19 24 24 C 1.50703 * 119.99933 * 180.02562 * 22 21 19 25 25 C 1.54635 * 111.03558 * 292.02774 * 24 22 21 26 26 C 1.51099 * 104.72535 * 217.33284 * 25 24 22 27 27 C 1.30528 * 111.10332 * 16.43717 * 26 25 24 28 28 C 1.51100 * 111.10355 * 359.97438 * 27 26 25 29 29 H 1.08994 * 109.47706 * 299.26958 * 1 2 3 30 30 H 1.09004 * 109.47235 * 59.27421 * 1 2 3 31 31 H 1.09000 * 109.47195 * 179.27161 * 1 2 3 32 32 H 1.09000 * 109.46734 * 180.72867 * 3 2 1 33 33 H 1.09000 * 109.47238 * 300.72601 * 3 2 1 34 34 H 1.08996 * 109.47245 * 60.72734 * 3 2 1 35 35 H 1.09002 * 110.41432 * 23.96964 * 4 2 1 36 36 H 1.09002 * 110.41130 * 261.64749 * 4 2 1 37 37 H 1.09000 * 109.47225 * 289.99666 * 6 5 4 38 38 H 1.08997 * 109.47331 * 50.00020 * 6 5 4 39 39 H 0.96997 * 119.99533 * 359.97438 * 9 7 6 40 40 H 0.96992 * 120.00274 * 180.02562 * 13 12 10 41 41 H 1.09005 * 110.41154 * 158.26271 * 18 5 4 42 42 H 1.08995 * 110.41948 * 280.70356 * 18 5 4 43 43 H 0.96992 * 120.00199 * 266.45722 * 21 19 18 44 44 H 1.08997 * 110.91417 * 56.03474 * 24 22 21 45 45 H 1.08999 * 110.39331 * 336.14578 * 25 24 22 46 46 H 1.09003 * 110.38984 * 98.52484 * 25 24 22 47 47 H 1.07998 * 124.44916 * 196.46020 * 26 25 24 48 48 H 1.08004 * 124.44791 * 179.97438 * 27 26 25 49 49 H 1.09000 * 110.39130 * 224.74555 * 28 27 26 50 50 H 1.09004 * 110.47639 * 102.42519 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0625 1.4344 0.0000 4 6 2.0662 -0.7711 1.2252 5 7 3.2706 -1.4827 0.7252 6 6 3.6076 -2.6200 1.5918 7 6 4.6712 -3.4579 0.9301 8 8 5.1060 -3.1387 -0.1564 9 7 5.1392 -4.5619 1.5454 10 6 6.1071 -5.3238 0.9436 11 1 6.4949 -5.0391 -0.0234 12 6 6.5901 -6.4616 1.5782 13 7 7.5175 -7.1923 1.0012 14 14 5.9199 -6.9536 3.2511 15 1 4.7513 -7.8520 3.0715 16 1 6.9756 -7.6621 4.0183 17 1 5.5003 -5.7377 3.9932 18 6 2.8841 -1.9444 -0.6329 19 6 2.0693 -0.7742 -1.2244 20 1 1.2434 -1.1539 -1.8259 21 7 2.9327 0.0891 -2.0341 22 6 3.1462 -0.1994 -3.3332 23 8 2.6233 -1.1734 -3.8319 24 6 4.0348 0.6882 -4.1660 25 6 3.3875 2.0758 -4.3822 26 6 3.7551 2.4548 -5.7979 27 6 4.1627 1.4142 -6.4722 28 6 4.1354 0.1678 -5.6184 29 1 -0.3634 0.5024 0.8964 30 1 -0.3634 0.5251 -0.8834 31 1 -0.3633 -1.0276 -0.0131 32 1 3.1522 1.4173 -0.0131 33 1 1.6967 1.9577 -0.8834 34 1 1.7178 1.9499 0.8964 35 1 1.3229 -1.4849 1.5803 36 1 2.3374 -0.0780 2.0217 37 1 3.9786 -2.2509 2.5480 38 1 2.7176 -3.2270 1.7573 39 1 4.7917 -4.8169 2.4144 40 1 7.8543 -7.9868 1.4440 41 1 3.7716 -2.1333 -1.2370 42 1 2.2689 -2.8418 -0.5687 43 1 3.3507 0.8682 -1.6353 44 1 5.0228 0.7826 -3.7153 45 1 2.3047 2.0105 -4.2756 46 1 3.7963 2.7996 -3.6770 47 1 3.6897 3.4554 -6.1990 48 1 4.4780 1.4405 -7.5049 49 1 5.0522 -0.4058 -5.7542 50 1 3.2665 -0.4432 -5.8633 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485567290.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:05 Heat of formation + Delta-G solvation = -36.412237 kcal Electronic energy + Delta-G solvation = -29980.258247 eV Core-core repulsion = 26008.058654 eV Total energy + Delta-G solvation = -3972.199593 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.66899 -39.48553 -38.19379 -37.32339 -34.72885 -33.87916 -33.22795 -31.68553 -30.18438 -28.85264 -28.28990 -27.73076 -27.09354 -25.10432 -23.79070 -22.50027 -21.07808 -19.83937 -19.49984 -19.12444 -18.92501 -18.12982 -17.40999 -16.50182 -16.26435 -15.84363 -15.35240 -15.23654 -14.89652 -14.61351 -14.18610 -14.05375 -13.66300 -13.54669 -13.23595 -13.03790 -12.87184 -12.68252 -12.53736 -12.40977 -12.34489 -12.29656 -12.00493 -11.86092 -11.74359 -11.57004 -11.48148 -11.36947 -11.23798 -11.14813 -10.97421 -10.74137 -10.73028 -10.57947 -9.97081 -9.67591 -9.55034 -9.07507 -8.90557 -8.51331 -8.20044 -8.05986 -6.30686 -3.82083 2.06433 2.73904 3.02387 3.06621 3.14864 3.24025 3.73027 4.04009 4.10766 4.28542 4.33730 4.44386 4.57128 4.71273 4.79282 4.85590 5.03715 5.11215 5.15208 5.21808 5.23839 5.38859 5.42544 5.44930 5.48395 5.51497 5.55796 5.59384 5.60828 5.69878 5.71604 5.76947 5.79358 5.86428 5.90551 5.92154 5.96588 6.03317 6.06085 6.14060 6.32278 6.52050 6.68308 6.70411 7.09288 7.16243 7.58171 7.61258 8.15166 8.34579 8.59983 8.95597 9.42429 9.82984 10.82441 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012569 B = 0.003049 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.197785 B = 9179.941926 C =10929.827019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.074 4.074 3 C -0.139 4.139 4 C 0.036 3.964 5 N -0.485 5.485 6 C 0.031 3.969 7 C 0.450 3.550 8 O -0.560 6.560 9 N -0.589 5.589 10 C -0.304 4.304 11 H 0.120 0.880 12 C 0.041 3.959 13 N -0.881 5.881 14 Si 0.879 3.121 15 H -0.271 1.271 16 H -0.276 1.276 17 H -0.269 1.269 18 C 0.025 3.975 19 C 0.148 3.852 20 H 0.092 0.908 21 N -0.713 5.713 22 C 0.523 3.477 23 O -0.539 6.539 24 C -0.117 4.117 25 C -0.086 4.086 26 C -0.176 4.176 27 C -0.156 4.156 28 C -0.090 4.090 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.045 0.955 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.050 0.950 39 H 0.370 0.630 40 H 0.273 0.727 41 H 0.121 0.879 42 H 0.042 0.958 43 H 0.402 0.598 44 H 0.107 0.893 45 H 0.077 0.923 46 H 0.076 0.924 47 H 0.125 0.875 48 H 0.126 0.874 49 H 0.077 0.923 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.508 20.588 -3.157 24.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.076 4.076 3 C -0.197 4.197 4 C -0.093 4.093 5 N -0.209 5.209 6 C -0.101 4.101 7 C 0.236 3.764 8 O -0.442 6.442 9 N -0.229 5.229 10 C -0.432 4.432 11 H 0.137 0.863 12 C -0.162 4.162 13 N -0.521 5.521 14 Si 0.706 3.294 15 H -0.197 1.197 16 H -0.202 1.202 17 H -0.195 1.195 18 C -0.103 4.103 19 C 0.042 3.958 20 H 0.110 0.890 21 N -0.366 5.366 22 C 0.309 3.691 23 O -0.415 6.415 24 C -0.138 4.138 25 C -0.124 4.124 26 C -0.194 4.194 27 C -0.174 4.174 28 C -0.127 4.127 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.101 0.899 37 H 0.110 0.890 38 H 0.068 0.932 39 H 0.203 0.797 40 H 0.084 0.916 41 H 0.139 0.861 42 H 0.061 0.939 43 H 0.240 0.760 44 H 0.125 0.875 45 H 0.095 0.905 46 H 0.095 0.905 47 H 0.143 0.857 48 H 0.143 0.857 49 H 0.095 0.905 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -12.955 20.231 -4.238 24.394 hybrid contribution -0.801 -0.862 1.765 2.121 sum -13.756 19.369 -2.473 23.885 Atomic orbital electron populations 1.21867 0.93507 1.02133 1.02023 1.21587 0.95560 0.96016 0.94390 1.21800 1.01521 0.94430 1.01899 1.23341 0.91775 0.97501 0.96660 1.65262 1.31306 1.22262 1.02112 1.22129 0.98065 0.92364 0.97532 1.19620 0.86378 0.82894 0.87495 1.90510 1.61167 1.71100 1.21414 1.42193 1.37473 1.23942 1.19251 1.19427 1.13907 1.04400 1.05515 0.86276 1.25037 0.96577 0.96245 0.98292 1.69621 1.27714 1.16214 1.38549 0.86676 0.79556 0.79175 0.84015 1.19669 1.20154 1.19482 1.23768 1.00943 0.94504 0.91123 1.21861 0.92552 0.90435 0.90957 0.89038 1.46173 1.50317 1.30246 1.09883 1.20326 0.81187 0.85399 0.82147 1.90692 1.50232 1.28459 1.72146 1.22176 0.99821 0.95203 0.96645 1.21285 1.00799 0.94561 0.95733 1.23174 1.01463 0.98812 0.95950 1.23354 0.99599 0.94937 0.99519 1.21302 1.03982 0.96653 0.90802 0.92124 0.92305 0.92357 0.91505 0.92326 0.92090 0.93681 0.89929 0.89023 0.93190 0.79726 0.91612 0.86082 0.93935 0.75989 0.87509 0.90462 0.90511 0.85723 0.85651 0.90482 0.88653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 8.25 37.16 0.31 -0.84 16 2 C -0.07 -0.75 1.04 -152.96 -0.16 -0.91 16 3 C -0.14 -1.13 7.11 37.16 0.26 -0.87 16 4 C 0.04 0.41 5.57 -2.18 -0.01 0.40 16 5 N -0.49 -7.61 5.34 -231.41 -1.23 -8.84 16 6 C 0.03 0.52 5.55 -4.97 -0.03 0.50 16 7 C 0.45 10.29 7.50 -10.98 -0.08 10.21 16 8 O -0.56 -14.92 13.24 5.54 0.07 -14.84 16 9 N -0.59 -14.17 5.09 -10.96 -0.06 -14.23 16 10 C -0.30 -8.67 10.16 -14.93 -0.15 -8.82 16 11 H 0.12 3.90 7.39 -52.48 -0.39 3.51 16 12 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 13 N -0.88 -25.99 13.96 55.50 0.77 -25.22 16 14 Si 0.88 19.52 27.74 -169.99 -4.71 14.81 16 15 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 16 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 17 H -0.27 -5.44 6.52 56.52 0.37 -5.07 16 18 C 0.02 0.43 5.02 -2.19 -0.01 0.42 16 19 C 0.15 1.96 3.00 -66.38 -0.20 1.76 16 20 H 0.09 1.30 7.22 -51.93 -0.38 0.92 16 21 N -0.71 -8.81 4.65 -52.30 -0.24 -9.05 16 22 C 0.52 7.38 7.05 -10.98 -0.08 7.31 16 23 O -0.54 -9.76 15.20 5.56 0.08 -9.67 16 24 C -0.12 -1.30 3.54 -90.06 -0.32 -1.62 16 25 C -0.09 -0.74 6.37 -26.83 -0.17 -0.91 16 26 C -0.18 -1.48 10.78 -35.70 -0.38 -1.87 16 27 C -0.16 -1.45 10.78 -35.70 -0.38 -1.83 16 28 C -0.09 -1.03 6.18 -26.84 -0.17 -1.20 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.60 6.83 -51.93 -0.35 0.24 16 33 H 0.06 0.42 7.89 -51.93 -0.41 0.01 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.04 0.49 7.54 -51.93 -0.39 0.10 16 36 H 0.08 0.84 7.86 -51.93 -0.41 0.43 16 37 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 38 H 0.05 0.75 7.88 -51.93 -0.41 0.34 16 39 H 0.37 7.82 5.76 -40.82 -0.24 7.59 16 40 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.12 2.63 5.96 -51.93 -0.31 2.32 16 42 H 0.04 0.76 8.00 -51.93 -0.42 0.34 16 43 H 0.40 4.10 5.77 -40.82 -0.24 3.86 16 44 H 0.11 1.12 8.14 -51.93 -0.42 0.69 16 45 H 0.08 0.68 7.88 -51.93 -0.41 0.27 16 46 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 48 H 0.13 0.96 8.06 -52.48 -0.42 0.53 16 49 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 50 H 0.10 1.26 6.95 -51.93 -0.36 0.90 16 LS Contribution 391.83 15.07 5.90 5.90 Total: -1.00 -34.32 391.83 -9.18 -43.50 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: -8.10 Total: 14.89 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: -1.67 Total: 2.75 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: -0.76 Total: -57.34 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: 0.16 Total: -24.52 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -4.71 Total: 14.81 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.32 -9.18 -43.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485567290.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.088 kcal (2) G-P(sol) polarization free energy of solvation -34.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds