Wall clock time and date at job start Tue Mar 31 2020 19:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 110.36537 * 2 1 4 4 C 1.54378 * 110.32286 * 122.18270 * 2 1 3 5 5 N 1.48560 * 104.69549 * 142.81047 * 4 2 1 6 6 C 1.46905 * 110.99577 * 200.89794 * 5 4 2 7 7 C 1.50698 * 109.47165 * 169.99909 * 6 5 4 8 8 O 1.21299 * 119.99948 * 0.02562 * 7 6 5 9 9 N 1.34780 * 120.00283 * 180.02562 * 7 6 5 10 10 C 1.37097 * 120.00035 * 180.02562 * 9 7 6 11 11 H 1.08004 * 120.00014 * 0.02562 * 10 9 7 12 12 C 1.38946 * 120.00002 * 179.97438 * 10 9 7 13 13 N 1.31415 * 120.00263 * 179.97438 * 12 10 9 14 14 Si 1.86800 * 120.00019 * 0.02562 * 12 10 9 15 15 H 1.48494 * 109.47227 * 89.99768 * 14 12 10 16 16 H 1.48497 * 109.47059 * 209.99979 * 14 12 10 17 17 H 1.48504 * 109.46819 * 329.99747 * 14 12 10 18 18 C 1.48555 * 104.22165 * 320.45136 * 5 4 2 19 19 C 1.54377 * 104.59533 * 39.48960 * 18 5 4 20 20 H 1.09004 * 110.32290 * 217.24846 * 19 18 5 21 21 N 1.46501 * 110.32718 * 95.13948 * 19 18 5 22 22 C 1.34779 * 119.99725 * 86.45173 * 21 19 18 23 23 O 1.21277 * 119.99975 * 0.02562 * 22 21 19 24 24 C 1.50703 * 119.99933 * 180.02562 * 22 21 19 25 25 C 1.54635 * 111.03558 * 292.02774 * 24 22 21 26 26 C 1.51099 * 104.72535 * 217.33284 * 25 24 22 27 27 C 1.30528 * 111.10332 * 16.43717 * 26 25 24 28 28 C 1.51100 * 111.10355 * 359.97438 * 27 26 25 29 29 H 1.08994 * 109.47706 * 299.26958 * 1 2 3 30 30 H 1.09004 * 109.47235 * 59.27421 * 1 2 3 31 31 H 1.09000 * 109.47195 * 179.27161 * 1 2 3 32 32 H 1.09000 * 109.46734 * 180.72867 * 3 2 1 33 33 H 1.09000 * 109.47238 * 300.72601 * 3 2 1 34 34 H 1.08996 * 109.47245 * 60.72734 * 3 2 1 35 35 H 1.09002 * 110.41432 * 23.96964 * 4 2 1 36 36 H 1.09002 * 110.41130 * 261.64749 * 4 2 1 37 37 H 1.09000 * 109.47225 * 289.99666 * 6 5 4 38 38 H 1.08997 * 109.47331 * 50.00020 * 6 5 4 39 39 H 0.96997 * 119.99533 * 359.97438 * 9 7 6 40 40 H 0.96992 * 120.00274 * 180.02562 * 13 12 10 41 41 H 1.09005 * 110.41154 * 158.26271 * 18 5 4 42 42 H 1.08995 * 110.41948 * 280.70356 * 18 5 4 43 43 H 0.96992 * 120.00199 * 266.45722 * 21 19 18 44 44 H 1.08997 * 110.91417 * 56.03474 * 24 22 21 45 45 H 1.08999 * 110.39331 * 336.14578 * 25 24 22 46 46 H 1.09003 * 110.38984 * 98.52484 * 25 24 22 47 47 H 1.07998 * 124.44916 * 196.46020 * 26 25 24 48 48 H 1.08004 * 124.44791 * 179.97438 * 27 26 25 49 49 H 1.09000 * 110.39130 * 224.74555 * 28 27 26 50 50 H 1.09004 * 110.47639 * 102.42519 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0625 1.4344 0.0000 4 6 2.0662 -0.7711 1.2252 5 7 3.2706 -1.4827 0.7252 6 6 3.6076 -2.6200 1.5918 7 6 4.6712 -3.4579 0.9301 8 8 5.1060 -3.1387 -0.1564 9 7 5.1392 -4.5619 1.5454 10 6 6.1071 -5.3238 0.9436 11 1 6.4949 -5.0391 -0.0234 12 6 6.5901 -6.4616 1.5782 13 7 7.5175 -7.1923 1.0012 14 14 5.9199 -6.9536 3.2511 15 1 4.7513 -7.8520 3.0715 16 1 6.9756 -7.6621 4.0183 17 1 5.5003 -5.7377 3.9932 18 6 2.8841 -1.9444 -0.6329 19 6 2.0693 -0.7742 -1.2244 20 1 1.2434 -1.1539 -1.8259 21 7 2.9327 0.0891 -2.0341 22 6 3.1462 -0.1994 -3.3332 23 8 2.6233 -1.1734 -3.8319 24 6 4.0348 0.6882 -4.1660 25 6 3.3875 2.0758 -4.3822 26 6 3.7551 2.4548 -5.7979 27 6 4.1627 1.4142 -6.4722 28 6 4.1354 0.1678 -5.6184 29 1 -0.3634 0.5024 0.8964 30 1 -0.3634 0.5251 -0.8834 31 1 -0.3633 -1.0276 -0.0131 32 1 3.1522 1.4173 -0.0131 33 1 1.6967 1.9577 -0.8834 34 1 1.7178 1.9499 0.8964 35 1 1.3229 -1.4849 1.5803 36 1 2.3374 -0.0780 2.0217 37 1 3.9786 -2.2509 2.5480 38 1 2.7176 -3.2270 1.7573 39 1 4.7917 -4.8169 2.4144 40 1 7.8543 -7.9868 1.4440 41 1 3.7716 -2.1333 -1.2370 42 1 2.2689 -2.8418 -0.5687 43 1 3.3507 0.8682 -1.6353 44 1 5.0228 0.7826 -3.7153 45 1 2.3047 2.0105 -4.2756 46 1 3.7963 2.7996 -3.6770 47 1 3.6897 3.4554 -6.1990 48 1 4.4780 1.4405 -7.5049 49 1 5.0522 -0.4058 -5.7542 50 1 3.2665 -0.4432 -5.8633 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485567290.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:03 Heat of formation + Delta-G solvation = -63.061531 kcal Electronic energy + Delta-G solvation = -29981.413847 eV Core-core repulsion = 26008.058654 eV Total energy + Delta-G solvation = -3973.355193 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.77043 -40.72000 -39.75497 -38.34613 -36.27248 -35.57291 -34.29479 -33.79657 -31.17959 -30.02056 -29.11899 -28.72390 -28.01367 -26.67698 -25.14155 -23.62556 -22.22223 -21.36733 -20.90494 -20.37191 -19.84412 -19.65896 -18.43821 -17.78115 -17.38025 -17.14385 -16.72988 -16.56477 -16.43699 -15.87026 -15.44258 -15.18859 -15.14508 -14.86069 -14.60617 -14.28282 -13.98256 -13.90960 -13.77823 -13.57472 -13.30847 -13.20384 -13.07310 -13.04606 -12.85772 -12.67029 -12.63231 -12.48404 -12.42506 -12.19078 -12.07815 -12.00634 -11.84209 -11.69648 -11.57364 -11.49584 -10.85740 -10.34538 -10.28025 -10.00957 -9.80527 -9.42157 -8.44227 -6.05444 1.27125 1.32939 1.36084 1.42097 1.60243 1.91573 2.20387 2.20915 2.66103 3.11048 3.16048 3.44760 3.48068 3.60097 3.66153 3.89554 3.99819 4.07860 4.20842 4.25272 4.29758 4.35212 4.37173 4.41303 4.48641 4.58228 4.65523 4.74936 4.75954 4.80830 4.82138 4.87011 4.92681 4.99864 5.05043 5.05738 5.11635 5.16380 5.24631 5.34657 5.45042 5.49670 5.52737 5.60304 5.80985 5.88063 5.99709 6.03291 6.55804 6.56801 6.85382 7.25809 7.35653 7.93853 8.73714 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012569 B = 0.003049 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.197785 B = 9179.941926 C =10929.827019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.064 4.064 3 C -0.137 4.137 4 C 0.036 3.964 5 N -0.497 5.497 6 C 0.041 3.959 7 C 0.446 3.554 8 O -0.606 6.606 9 N -0.590 5.590 10 C -0.328 4.328 11 H 0.051 0.949 12 C -0.016 4.016 13 N -0.935 5.935 14 Si 0.967 3.033 15 H -0.259 1.259 16 H -0.273 1.273 17 H -0.229 1.229 18 C 0.029 3.971 19 C 0.151 3.849 20 H 0.077 0.923 21 N -0.700 5.700 22 C 0.516 3.484 23 O -0.589 6.589 24 C -0.118 4.118 25 C -0.081 4.081 26 C -0.161 4.161 27 C -0.173 4.173 28 C -0.096 4.096 29 H 0.084 0.916 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.058 0.942 36 H 0.108 0.892 37 H 0.127 0.873 38 H 0.078 0.922 39 H 0.390 0.610 40 H 0.279 0.721 41 H 0.065 0.935 42 H 0.024 0.976 43 H 0.415 0.585 44 H 0.113 0.887 45 H 0.078 0.922 46 H 0.105 0.895 47 H 0.154 0.846 48 H 0.141 0.859 49 H 0.065 0.935 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.031 23.819 0.430 28.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.065 4.065 3 C -0.195 4.195 4 C -0.091 4.091 5 N -0.222 5.222 6 C -0.090 4.090 7 C 0.234 3.766 8 O -0.490 6.490 9 N -0.232 5.232 10 C -0.457 4.457 11 H 0.070 0.930 12 C -0.215 4.215 13 N -0.576 5.576 14 Si 0.786 3.214 15 H -0.183 1.183 16 H -0.198 1.198 17 H -0.152 1.152 18 C -0.101 4.101 19 C 0.044 3.956 20 H 0.096 0.904 21 N -0.354 5.354 22 C 0.304 3.696 23 O -0.469 6.469 24 C -0.139 4.139 25 C -0.118 4.118 26 C -0.179 4.179 27 C -0.191 4.191 28 C -0.134 4.134 29 H 0.103 0.897 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.103 0.897 35 H 0.076 0.924 36 H 0.127 0.873 37 H 0.145 0.855 38 H 0.096 0.904 39 H 0.225 0.775 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.043 0.957 43 H 0.255 0.745 44 H 0.131 0.869 45 H 0.096 0.904 46 H 0.123 0.877 47 H 0.171 0.829 48 H 0.159 0.841 49 H 0.084 0.916 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.489 23.523 -0.621 28.171 hybrid contribution 0.032 -1.858 0.518 1.929 sum -15.457 21.665 -0.103 26.613 Atomic orbital electron populations 1.21852 0.91726 1.02136 1.03425 1.21607 0.96823 0.96591 0.91521 1.21814 1.00926 0.93033 1.03695 1.23517 0.90197 0.97759 0.97625 1.65230 1.34045 1.21675 1.01203 1.22112 0.96659 0.92283 0.97955 1.20938 0.86403 0.82455 0.86805 1.90527 1.62706 1.72096 1.23718 1.42013 1.37009 1.24136 1.20062 1.18969 1.16211 1.06424 1.04128 0.93039 1.26150 0.96279 0.95187 1.03848 1.69809 1.29489 1.16998 1.41297 0.85345 0.78961 0.80250 0.76836 1.18306 1.19810 1.15198 1.23483 0.98696 0.95755 0.92126 1.21792 0.91538 0.90063 0.92174 0.90447 1.46115 1.49778 1.30184 1.09285 1.20950 0.80847 0.85043 0.82807 1.90664 1.52380 1.30664 1.73222 1.22217 0.99612 0.96409 0.95677 1.21327 1.00691 0.93002 0.96826 1.23458 0.99417 0.99650 0.95347 1.23367 1.01579 0.93907 1.00238 1.21287 1.02267 0.97765 0.92046 0.89684 0.91936 0.93122 0.92379 0.91202 0.89723 0.92384 0.87339 0.85533 0.90437 0.77480 0.91103 0.91634 0.95747 0.74456 0.86894 0.90406 0.87667 0.82867 0.84133 0.91640 0.91324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.79 8.25 71.98 0.59 -1.20 16 2 C -0.06 -1.12 1.04 -51.18 -0.05 -1.17 16 3 C -0.14 -1.71 7.11 71.98 0.51 -1.20 16 4 C 0.04 0.70 5.57 86.45 0.48 1.18 16 5 N -0.50 -14.94 5.34 -886.06 -4.73 -19.67 16 6 C 0.04 1.30 5.55 85.56 0.47 1.78 16 7 C 0.45 20.85 7.50 87.66 0.66 21.51 16 8 O -0.61 -34.64 13.24 -3.09 -0.04 -34.68 16 9 N -0.59 -28.68 5.09 -306.98 -1.56 -30.25 16 10 C -0.33 -19.79 10.16 84.04 0.85 -18.93 16 11 H 0.05 3.72 7.39 -2.91 -0.02 3.69 16 12 C -0.02 -0.92 5.50 84.92 0.47 -0.45 16 13 N -0.94 -57.71 13.96 21.66 0.30 -57.40 16 14 Si 0.97 39.51 27.74 68.60 1.90 41.41 16 15 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 16 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 17 H -0.23 -7.80 6.52 99.48 0.65 -7.15 16 18 C 0.03 1.02 5.02 86.45 0.43 1.46 16 19 C 0.15 4.03 3.00 45.99 0.14 4.17 16 20 H 0.08 2.30 7.22 -2.38 -0.02 2.28 16 21 N -0.70 -17.59 4.65 -437.78 -2.03 -19.62 16 22 C 0.52 15.50 7.05 87.66 0.62 16.12 16 23 O -0.59 -23.39 15.20 -3.02 -0.05 -23.44 16 24 C -0.12 -2.71 3.54 -10.43 -0.04 -2.74 16 25 C -0.08 -1.25 6.37 30.53 0.19 -1.05 16 26 C -0.16 -2.37 10.78 26.26 0.28 -2.09 16 27 C -0.17 -3.15 10.78 26.26 0.28 -2.87 16 28 C -0.10 -2.39 6.18 30.52 0.19 -2.20 16 29 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.06 0.81 8.14 -2.38 -0.02 0.80 16 31 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.06 0.85 6.83 -2.39 -0.02 0.83 16 33 H 0.07 0.74 7.89 -2.39 -0.02 0.72 16 34 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.06 1.01 7.54 -2.39 -0.02 0.99 16 36 H 0.11 1.61 7.86 -2.39 -0.02 1.60 16 37 H 0.13 3.20 8.14 -2.39 -0.02 3.18 16 38 H 0.08 2.07 7.88 -2.39 -0.02 2.06 16 39 H 0.39 15.60 5.76 -92.71 -0.53 15.06 16 40 H 0.28 15.71 8.31 -92.71 -0.77 14.94 16 41 H 0.07 3.11 5.96 -2.38 -0.01 3.10 16 42 H 0.02 0.92 8.00 -2.39 -0.02 0.90 16 43 H 0.41 8.07 5.77 -92.71 -0.54 7.54 16 44 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 45 H 0.08 1.24 7.88 -2.39 -0.02 1.22 16 46 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.15 1.44 8.06 -2.91 -0.02 1.41 16 48 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 49 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 50 H 0.07 2.05 6.95 -2.38 -0.02 2.03 16 Total: -1.00 -86.16 391.83 -0.29 -86.45 By element: Atomic # 1 Polarization: 45.07 SS G_CDS: -0.18 Total: 44.89 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: 6.09 Total: 12.30 kcal Atomic # 7 Polarization: -118.92 SS G_CDS: -8.02 Total: -126.94 kcal Atomic # 8 Polarization: -58.03 SS G_CDS: -0.09 Total: -58.11 kcal Atomic # 14 Polarization: 39.51 SS G_CDS: 1.90 Total: 41.41 kcal Total: -86.16 -0.29 -86.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485567290.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.392 kcal (2) G-P(sol) polarization free energy of solvation -86.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds