Wall clock time and date at job start Tue Mar 31 2020 19:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.34252 * 126.52979 * 2 1 4 4 C 1.34050 * 108.22836 * 179.97438 * 3 2 1 5 5 C 1.50706 * 125.37536 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47238 * 300.02529 * 5 4 3 7 7 C 1.52992 * 109.47161 * 60.03065 * 5 4 3 8 8 N 1.29933 * 109.24351 * 0.26530 * 4 3 2 9 9 C 1.36066 * 108.47663 * 359.57721 * 8 4 3 10 10 C 1.47418 * 126.44831 * 180.19826 * 9 8 4 11 11 O 1.21616 * 119.99984 * 180.25749 * 10 9 8 12 12 N 1.34777 * 120.00041 * 0.25649 * 10 9 8 13 13 C 1.46505 * 119.99765 * 179.97438 * 12 10 9 14 14 H 1.08995 * 110.01570 * 33.61401 * 13 12 10 15 15 C 1.54258 * 110.03427 * 272.16489 * 13 12 10 16 16 C 1.54885 * 104.19757 * 217.10519 * 15 13 12 17 17 C 1.54892 * 102.74585 * 37.94738 * 16 15 13 18 18 H 1.09003 * 110.59776 * 80.79450 * 17 16 15 19 19 C 1.52995 * 110.48528 * 203.37585 * 17 16 15 20 20 N 1.46506 * 109.47372 * 289.77496 * 19 17 16 21 21 C 1.36940 * 119.99957 * 179.97438 * 20 19 17 22 22 H 1.08001 * 119.99775 * 0.02562 * 21 20 19 23 23 C 1.38808 * 119.99778 * 179.97438 * 21 20 19 24 24 N 1.31625 * 120.00089 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99930 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47133 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.46945 * 120.00244 * 25 23 21 28 28 H 1.48497 * 109.47534 * 240.00485 * 25 23 21 29 29 C 1.53873 * 110.02597 * 155.00081 * 13 12 10 30 30 H 1.09008 * 109.46758 * 0.02562 * 1 2 3 31 31 H 1.08996 * 109.47338 * 120.02463 * 1 2 3 32 32 H 1.09002 * 109.47668 * 240.02627 * 1 2 3 33 33 H 1.08998 * 109.46456 * 180.02562 * 5 4 3 34 34 H 1.09002 * 109.47153 * 180.02562 * 6 5 4 35 35 H 1.09001 * 109.46832 * 60.00314 * 6 5 4 36 36 H 1.09004 * 109.47261 * 300.00295 * 6 5 4 37 37 H 1.09001 * 109.47066 * 299.99783 * 7 5 4 38 38 H 1.08996 * 109.47747 * 59.99449 * 7 5 4 39 39 H 1.09002 * 109.47103 * 179.97438 * 7 5 4 40 40 H 0.96999 * 119.99878 * 0.02562 * 12 10 9 41 41 H 1.08997 * 110.49304 * 335.79065 * 15 13 12 42 42 H 1.09012 * 110.48442 * 98.43064 * 15 13 12 43 43 H 1.08998 * 110.76076 * 279.63254 * 16 15 13 44 44 H 1.09002 * 110.91302 * 156.33421 * 16 15 13 45 45 H 1.09005 * 109.47366 * 49.77496 * 19 17 16 46 46 H 1.08994 * 109.47131 * 169.77481 * 19 17 16 47 47 H 0.96998 * 119.99575 * 0.02562 * 20 19 17 48 48 H 0.97004 * 119.99724 * 179.97438 * 24 23 21 49 49 H 1.09000 * 110.03446 * 238.56543 * 29 13 12 50 50 H 1.09000 * 110.04026 * 0.02562 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0788 0.0000 4 6 3.5788 0.6578 0.0006 5 6 4.7930 1.5505 0.0002 6 6 4.7767 2.4333 -1.2493 7 6 4.7768 2.4340 1.2492 8 7 3.6001 -0.6413 -0.0048 9 6 2.3169 -1.0937 0.0006 10 6 1.8852 -2.5033 0.0014 11 8 0.7001 -2.7763 0.0017 12 7 2.8039 -3.4894 0.0019 13 6 2.3748 -4.8902 0.0033 14 1 1.4498 -4.9976 -0.5631 15 6 2.1683 -5.3782 1.4520 16 6 2.6681 -6.8441 1.4339 17 6 3.8954 -6.7751 0.4916 18 1 4.7697 -6.4048 1.0270 19 6 4.1831 -8.1502 -0.1145 20 7 4.6957 -9.0450 0.9262 21 6 5.0246 -10.3377 0.6165 22 1 4.9065 -10.6975 -0.3950 23 6 5.5108 -11.1854 1.6024 24 7 5.6552 -10.7467 2.8349 25 14 5.9587 -12.9490 1.1801 26 1 5.7056 -13.1921 -0.2628 27 1 7.3957 -13.1791 1.4758 28 1 5.1315 -13.8777 1.9915 29 6 3.4730 -5.7783 -0.6074 30 1 -0.3633 1.0278 -0.0005 31 1 -0.3634 -0.5142 -0.8897 32 1 -0.3634 -0.5134 0.8902 33 1 5.6944 0.9377 0.0004 34 1 5.6551 3.0786 -1.2498 35 1 3.8752 3.0461 -1.2494 36 1 4.7882 1.8038 -2.1391 37 1 3.8754 3.0468 1.2491 38 1 4.7884 1.8052 2.1393 39 1 5.6553 3.0793 1.2491 40 1 3.7491 -3.2717 0.0020 41 1 2.7622 -4.7812 2.1440 42 1 1.1127 -5.3384 1.7212 43 1 1.9052 -7.5075 1.0266 44 1 2.9651 -7.1663 2.4320 45 1 3.2639 -8.5641 -0.5291 46 1 4.9259 -8.0502 -0.9059 47 1 4.8014 -8.7219 1.8346 48 1 5.9946 -11.3392 3.5239 49 1 3.0807 -6.3176 -1.4696 50 1 4.3253 -5.1673 -0.9044 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507400485.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:46 Heat of formation + Delta-G solvation = -31.694741 kcal Electronic energy + Delta-G solvation = -28447.705444 eV Core-core repulsion = 24475.710418 eV Total energy + Delta-G solvation = -3971.995027 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.80103 -39.91132 -37.97777 -36.26481 -35.09285 -34.79617 -33.29416 -32.30601 -31.04222 -28.74323 -28.31863 -27.77015 -27.07862 -24.63190 -23.94891 -22.90296 -22.13062 -21.59788 -20.28268 -20.12040 -19.56148 -17.97385 -17.28617 -16.99427 -16.52059 -16.24231 -15.55477 -15.07642 -14.86667 -14.83615 -14.43666 -14.15193 -13.98066 -13.86820 -13.65360 -13.35845 -13.26178 -12.98339 -12.90846 -12.76281 -12.75768 -12.19923 -12.13456 -11.92321 -11.81071 -11.60196 -11.49179 -11.27835 -11.09316 -11.04816 -10.83675 -10.67114 -10.51718 -10.26035 -10.21544 -10.14597 -9.89425 -9.63621 -9.22444 -8.93685 -8.82604 -6.86176 -5.72457 -3.00338 0.79579 1.70715 2.09997 2.98377 3.13103 3.44180 3.45889 3.51407 3.53734 4.18182 4.36761 4.44771 4.46127 4.61488 4.69072 4.78705 4.82964 4.84564 5.02139 5.05011 5.11119 5.15538 5.22400 5.25461 5.36309 5.53014 5.56452 5.58579 5.59211 5.63630 5.64954 5.69634 5.70570 5.71066 5.78386 5.93503 5.96335 6.14558 6.21288 6.30616 6.35692 6.56269 6.60648 6.65172 6.86066 6.99487 7.11846 7.48282 7.74477 8.06554 8.46936 9.57963 10.17422 10.52116 11.50657 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019629 B = 0.001913 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.141964 B =14630.535368 C =15451.299889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.038 3.962 3 O -0.194 6.194 4 C 0.200 3.800 5 C 0.003 3.997 6 C -0.150 4.150 7 C -0.151 4.151 8 N -0.457 5.457 9 C -0.076 4.076 10 C 0.601 3.399 11 O -0.537 6.537 12 N -0.704 5.704 13 C 0.141 3.859 14 H 0.092 0.908 15 C -0.133 4.133 16 C -0.110 4.110 17 C -0.097 4.097 18 H 0.075 0.925 19 C 0.160 3.840 20 N -0.732 5.732 21 C -0.236 4.236 22 H 0.070 0.930 23 C -0.017 4.017 24 N -0.934 5.934 25 Si 0.906 3.094 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 C -0.123 4.123 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.116 0.884 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.408 0.592 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.020 0.980 46 H 0.017 0.983 47 H 0.384 0.616 48 H 0.254 0.746 49 H 0.077 0.923 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.389 31.323 -6.433 32.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.019 4.019 3 O -0.081 6.081 4 C -0.009 4.009 5 C -0.017 4.017 6 C -0.208 4.208 7 C -0.209 4.209 8 N -0.186 5.186 9 C -0.196 4.196 10 C 0.387 3.613 11 O -0.414 6.414 12 N -0.354 5.354 13 C 0.037 3.963 14 H 0.110 0.890 15 C -0.172 4.172 16 C -0.148 4.148 17 C -0.116 4.116 18 H 0.094 0.906 19 C 0.032 3.968 20 N -0.376 5.376 21 C -0.367 4.367 22 H 0.088 0.912 23 C -0.212 4.212 24 N -0.583 5.583 25 Si 0.738 3.262 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 C -0.161 4.161 30 H 0.096 0.904 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.134 0.866 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.094 0.906 40 H 0.244 0.756 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.091 0.909 45 H 0.038 0.962 46 H 0.035 0.965 47 H 0.217 0.783 48 H 0.064 0.936 49 H 0.096 0.904 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.669 30.581 -6.558 31.980 hybrid contribution 0.312 -0.438 0.167 0.563 sum -6.357 30.143 -6.391 31.462 Atomic orbital electron populations 1.20455 0.82449 1.03779 1.05633 1.23748 0.95132 0.83347 0.99646 1.84298 1.17947 1.36152 1.69680 1.26179 0.84048 0.90087 1.00618 1.19800 0.89818 0.94319 0.97734 1.21905 1.03233 0.99544 0.96152 1.21903 1.03229 0.99550 0.96181 1.70750 1.21598 1.08989 1.17213 1.21554 0.88860 0.95697 1.13521 1.16706 0.85631 0.82521 0.76465 1.90800 1.16233 1.83331 1.51055 1.46062 1.10021 1.05871 1.73434 1.21790 0.98621 0.78555 0.97356 0.89021 1.22793 1.01428 0.97326 0.95637 1.22463 0.97250 0.94570 1.00546 1.22151 0.98111 0.95728 0.95581 0.90642 1.20698 0.96094 0.87994 0.91971 1.42363 1.77794 1.09451 1.07984 1.19293 1.35053 0.87683 0.94718 0.91192 1.24741 1.02472 0.98402 0.95616 1.69676 1.52514 1.35327 1.00794 0.86119 0.77715 0.85038 0.77354 1.20594 1.21939 1.21918 1.22436 0.97490 0.97105 0.99086 0.90372 0.88215 0.88172 0.86595 0.90654 0.91824 0.91846 0.91822 0.91793 0.90649 0.75636 0.91488 0.91425 0.91152 0.90877 0.96242 0.96538 0.78275 0.93638 0.90428 0.91287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.51 9.13 36.00 0.33 -0.19 16 2 C 0.04 0.40 7.44 -35.08 -0.26 0.14 16 3 O -0.19 -1.91 10.73 6.52 0.07 -1.84 16 4 C 0.20 1.91 6.81 -13.08 -0.09 1.82 16 5 C 0.00 0.02 3.39 -91.77 -0.31 -0.30 16 6 C -0.15 -0.69 9.18 37.16 0.34 -0.35 16 7 C -0.15 -0.71 9.17 37.15 0.34 -0.37 16 8 N -0.46 -5.33 11.06 -7.65 -0.08 -5.42 16 9 C -0.08 -0.94 6.99 -83.02 -0.58 -1.52 16 10 C 0.60 8.13 7.81 -12.52 -0.10 8.03 16 11 O -0.54 -8.17 15.26 5.26 0.08 -8.09 16 12 N -0.70 -8.78 5.03 -53.80 -0.27 -9.05 16 13 C 0.14 1.83 3.25 -66.81 -0.22 1.61 16 14 H 0.09 1.26 7.56 -51.93 -0.39 0.86 16 15 C -0.13 -1.83 6.53 -25.08 -0.16 -2.00 16 16 C -0.11 -1.74 6.19 -24.74 -0.15 -1.90 16 17 C -0.10 -1.57 2.89 -88.96 -0.26 -1.82 16 18 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 19 C 0.16 3.25 5.54 -4.04 -0.02 3.23 16 20 N -0.73 -18.81 5.49 -59.91 -0.33 -19.14 16 21 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 22 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 23 C -0.02 -0.49 5.50 -17.43 -0.10 -0.58 16 24 N -0.93 -28.67 13.06 55.49 0.72 -27.94 16 25 Si 0.91 22.76 29.55 -169.99 -5.02 17.74 16 26 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 28 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 29 C -0.12 -1.61 6.14 -25.61 -0.16 -1.77 16 30 H 0.08 0.42 8.14 -51.92 -0.42 -0.01 16 31 H 0.10 0.77 8.08 -51.93 -0.42 0.35 16 32 H 0.10 0.79 8.08 -51.93 -0.42 0.37 16 33 H 0.12 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 35 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 38 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 40 H 0.41 4.72 8.05 -40.82 -0.33 4.39 16 41 H 0.07 0.92 8.05 -51.93 -0.42 0.51 16 42 H 0.07 0.93 8.14 -51.92 -0.42 0.51 16 43 H 0.07 1.14 7.97 -51.93 -0.41 0.73 16 44 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 45 H 0.02 0.40 8.02 -51.93 -0.42 -0.01 16 46 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.38 10.33 7.64 -40.82 -0.31 10.02 16 48 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 49 H 0.08 0.99 7.84 -51.93 -0.41 0.59 16 50 H 0.07 0.83 7.62 -51.93 -0.40 0.43 16 LS Contribution 410.18 15.07 6.18 6.18 Total: -1.00 -33.54 410.18 -8.74 -42.28 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -8.54 Total: 8.12 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -1.55 Total: -2.84 kcal Atomic # 7 Polarization: -61.59 SS G_CDS: 0.04 Total: -61.55 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.15 Total: -9.92 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.54 -8.74 -42.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507400485.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.589 kcal (2) G-P(sol) polarization free energy of solvation -33.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds