Wall clock time and date at job start Tue Mar 31 2020 19:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.34252 * 126.52979 * 2 1 4 4 C 1.34050 * 108.22836 * 179.97438 * 3 2 1 5 5 C 1.50706 * 125.37536 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47238 * 300.02529 * 5 4 3 7 7 C 1.52992 * 109.47161 * 60.03065 * 5 4 3 8 8 N 1.29933 * 109.24351 * 0.26530 * 4 3 2 9 9 C 1.36066 * 108.47663 * 359.57721 * 8 4 3 10 10 C 1.47418 * 126.44831 * 180.19826 * 9 8 4 11 11 O 1.21616 * 119.99984 * 180.25749 * 10 9 8 12 12 N 1.34777 * 120.00041 * 0.25649 * 10 9 8 13 13 C 1.46505 * 119.99765 * 179.97438 * 12 10 9 14 14 H 1.08995 * 110.01570 * 33.61401 * 13 12 10 15 15 C 1.54258 * 110.03427 * 272.16489 * 13 12 10 16 16 C 1.54885 * 104.19757 * 217.10519 * 15 13 12 17 17 C 1.54892 * 102.74585 * 37.94738 * 16 15 13 18 18 H 1.09003 * 110.59776 * 80.79450 * 17 16 15 19 19 C 1.52995 * 110.48528 * 203.37585 * 17 16 15 20 20 N 1.46506 * 109.47372 * 289.77496 * 19 17 16 21 21 C 1.36940 * 119.99957 * 179.97438 * 20 19 17 22 22 H 1.08001 * 119.99775 * 0.02562 * 21 20 19 23 23 C 1.38808 * 119.99778 * 179.97438 * 21 20 19 24 24 N 1.31625 * 120.00089 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99930 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47133 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.46945 * 120.00244 * 25 23 21 28 28 H 1.48497 * 109.47534 * 240.00485 * 25 23 21 29 29 C 1.53873 * 110.02597 * 155.00081 * 13 12 10 30 30 H 1.09008 * 109.46758 * 0.02562 * 1 2 3 31 31 H 1.08996 * 109.47338 * 120.02463 * 1 2 3 32 32 H 1.09002 * 109.47668 * 240.02627 * 1 2 3 33 33 H 1.08998 * 109.46456 * 180.02562 * 5 4 3 34 34 H 1.09002 * 109.47153 * 180.02562 * 6 5 4 35 35 H 1.09001 * 109.46832 * 60.00314 * 6 5 4 36 36 H 1.09004 * 109.47261 * 300.00295 * 6 5 4 37 37 H 1.09001 * 109.47066 * 299.99783 * 7 5 4 38 38 H 1.08996 * 109.47747 * 59.99449 * 7 5 4 39 39 H 1.09002 * 109.47103 * 179.97438 * 7 5 4 40 40 H 0.96999 * 119.99878 * 0.02562 * 12 10 9 41 41 H 1.08997 * 110.49304 * 335.79065 * 15 13 12 42 42 H 1.09012 * 110.48442 * 98.43064 * 15 13 12 43 43 H 1.08998 * 110.76076 * 279.63254 * 16 15 13 44 44 H 1.09002 * 110.91302 * 156.33421 * 16 15 13 45 45 H 1.09005 * 109.47366 * 49.77496 * 19 17 16 46 46 H 1.08994 * 109.47131 * 169.77481 * 19 17 16 47 47 H 0.96998 * 119.99575 * 0.02562 * 20 19 17 48 48 H 0.97004 * 119.99724 * 179.97438 * 24 23 21 49 49 H 1.09000 * 110.03446 * 238.56543 * 29 13 12 50 50 H 1.09000 * 110.04026 * 0.02562 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0788 0.0000 4 6 3.5788 0.6578 0.0006 5 6 4.7930 1.5505 0.0002 6 6 4.7767 2.4333 -1.2493 7 6 4.7768 2.4340 1.2492 8 7 3.6001 -0.6413 -0.0048 9 6 2.3169 -1.0937 0.0006 10 6 1.8852 -2.5033 0.0014 11 8 0.7001 -2.7763 0.0017 12 7 2.8039 -3.4894 0.0019 13 6 2.3748 -4.8902 0.0033 14 1 1.4498 -4.9976 -0.5631 15 6 2.1683 -5.3782 1.4520 16 6 2.6681 -6.8441 1.4339 17 6 3.8954 -6.7751 0.4916 18 1 4.7697 -6.4048 1.0270 19 6 4.1831 -8.1502 -0.1145 20 7 4.6957 -9.0450 0.9262 21 6 5.0246 -10.3377 0.6165 22 1 4.9065 -10.6975 -0.3950 23 6 5.5108 -11.1854 1.6024 24 7 5.6552 -10.7467 2.8349 25 14 5.9587 -12.9490 1.1801 26 1 5.7056 -13.1921 -0.2628 27 1 7.3957 -13.1791 1.4758 28 1 5.1315 -13.8777 1.9915 29 6 3.4730 -5.7783 -0.6074 30 1 -0.3633 1.0278 -0.0005 31 1 -0.3634 -0.5142 -0.8897 32 1 -0.3634 -0.5134 0.8902 33 1 5.6944 0.9377 0.0004 34 1 5.6551 3.0786 -1.2498 35 1 3.8752 3.0461 -1.2494 36 1 4.7882 1.8038 -2.1391 37 1 3.8754 3.0468 1.2491 38 1 4.7884 1.8052 2.1393 39 1 5.6553 3.0793 1.2491 40 1 3.7491 -3.2717 0.0020 41 1 2.7622 -4.7812 2.1440 42 1 1.1127 -5.3384 1.7212 43 1 1.9052 -7.5075 1.0266 44 1 2.9651 -7.1663 2.4320 45 1 3.2639 -8.5641 -0.5291 46 1 4.9259 -8.0502 -0.9059 47 1 4.8014 -8.7219 1.8346 48 1 5.9946 -11.3392 3.5239 49 1 3.0807 -6.3176 -1.4696 50 1 4.3253 -5.1673 -0.9044 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507400485.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:45 Heat of formation + Delta-G solvation = -54.841489 kcal Electronic energy + Delta-G solvation = -28448.709162 eV Core-core repulsion = 24475.710418 eV Total energy + Delta-G solvation = -3972.998745 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -44.57861 -40.99251 -39.21385 -36.78401 -36.47572 -35.89422 -34.74457 -32.99407 -32.91441 -30.18848 -29.44978 -28.11687 -28.02506 -26.26443 -24.94735 -23.93012 -23.58218 -22.41563 -21.40152 -21.11985 -20.79150 -19.08648 -18.85483 -18.06540 -17.46451 -17.08140 -16.75451 -16.22493 -16.12957 -15.80878 -15.67155 -15.32603 -15.09843 -14.96706 -14.63298 -14.49183 -14.37252 -14.31419 -13.80636 -13.57874 -13.48318 -13.16569 -13.06454 -12.96455 -12.82894 -12.62452 -12.49851 -12.41482 -12.15413 -12.12816 -12.08849 -11.99706 -11.93433 -11.79048 -11.64347 -11.55276 -11.49597 -11.23148 -10.91717 -10.21523 -9.81118 -8.97623 -7.94537 -5.22792 -0.03018 0.88686 1.37973 1.47234 1.48143 1.58344 2.02590 2.15747 2.56476 2.73026 3.38847 3.48295 3.53678 3.57145 3.70237 3.87514 3.90230 4.04196 4.12832 4.16518 4.22393 4.36639 4.43445 4.48105 4.49721 4.54928 4.60517 4.66576 4.74993 4.76297 4.78626 4.84046 4.86493 4.89130 4.95029 5.03257 5.04617 5.06364 5.10598 5.13932 5.22923 5.29263 5.30244 5.36590 5.47395 5.51474 5.55810 6.25686 6.28373 6.54710 7.05162 7.34329 8.11756 8.34854 9.29373 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019629 B = 0.001913 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.141964 B =14630.535368 C =15451.299889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.042 3.958 3 O -0.192 6.192 4 C 0.204 3.796 5 C 0.001 3.999 6 C -0.146 4.146 7 C -0.147 4.147 8 N -0.480 5.480 9 C -0.106 4.106 10 C 0.600 3.400 11 O -0.559 6.559 12 N -0.698 5.698 13 C 0.149 3.851 14 H 0.089 0.911 15 C -0.123 4.123 16 C -0.107 4.107 17 C -0.089 4.089 18 H 0.069 0.931 19 C 0.158 3.842 20 N -0.745 5.745 21 C -0.243 4.243 22 H 0.075 0.925 23 C -0.079 4.079 24 N -0.970 5.970 25 Si 0.974 3.026 26 H -0.266 1.266 27 H -0.293 1.293 28 H -0.293 1.293 29 C -0.110 4.110 30 H 0.104 0.896 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.121 0.879 34 H 0.097 0.903 35 H 0.062 0.938 36 H 0.054 0.946 37 H 0.062 0.938 38 H 0.052 0.948 39 H 0.097 0.903 40 H 0.413 0.587 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.053 0.947 45 H 0.022 0.978 46 H 0.020 0.980 47 H 0.374 0.626 48 H 0.251 0.749 49 H 0.086 0.914 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.242 32.966 -7.664 34.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.015 4.015 3 O -0.079 6.079 4 C -0.005 4.005 5 C -0.018 4.018 6 C -0.204 4.204 7 C -0.205 4.205 8 N -0.209 5.209 9 C -0.224 4.224 10 C 0.387 3.613 11 O -0.438 6.438 12 N -0.348 5.348 13 C 0.045 3.955 14 H 0.108 0.892 15 C -0.161 4.161 16 C -0.145 4.145 17 C -0.108 4.108 18 H 0.087 0.913 19 C 0.032 3.968 20 N -0.387 5.387 21 C -0.375 4.375 22 H 0.093 0.907 23 C -0.271 4.271 24 N -0.621 5.621 25 Si 0.803 3.197 26 H -0.190 1.190 27 H -0.220 1.220 28 H -0.221 1.221 29 C -0.149 4.149 30 H 0.123 0.877 31 H 0.118 0.882 32 H 0.116 0.884 33 H 0.139 0.861 34 H 0.116 0.884 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.116 0.884 40 H 0.250 0.750 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.072 0.928 45 H 0.040 0.960 46 H 0.038 0.962 47 H 0.206 0.794 48 H 0.059 0.941 49 H 0.105 0.895 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.522 32.239 -7.831 33.811 hybrid contribution 0.263 -0.862 0.526 1.043 sum -6.260 31.377 -7.305 32.819 Atomic orbital electron populations 1.20559 0.80694 1.05499 1.05401 1.24209 0.96168 0.83036 0.98090 1.84329 1.18124 1.35868 1.69628 1.26995 0.84730 0.90048 0.98760 1.20069 0.88336 0.94316 0.99092 1.21897 1.04300 0.99329 0.94864 1.21898 1.04312 0.99344 0.94918 1.70720 1.21457 1.10110 1.18597 1.21505 0.89738 0.95497 1.15704 1.16885 0.85384 0.83154 0.75920 1.90777 1.17023 1.83804 1.52200 1.45984 1.10231 1.05462 1.73166 1.21627 0.98465 0.78895 0.96559 0.89240 1.22684 1.01369 0.95741 0.96346 1.22375 0.96998 0.95858 0.99312 1.22019 0.98027 0.94236 0.96485 0.91295 1.20869 0.95730 0.89174 0.91016 1.42580 1.77959 1.09508 1.08655 1.19698 1.33989 0.88920 0.94889 0.90668 1.25587 1.03283 1.02605 0.95628 1.69832 1.53938 1.36638 1.01728 0.85056 0.76952 0.79937 0.77722 1.19027 1.22008 1.22071 1.22330 0.98095 0.96424 0.98040 0.87704 0.88234 0.88401 0.86090 0.88415 0.91882 0.92699 0.91865 0.92857 0.88397 0.75034 0.91469 0.91289 0.91689 0.92838 0.96034 0.96182 0.79438 0.94053 0.89542 0.89666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.93 9.13 71.23 0.65 -0.28 16 2 C 0.04 0.85 7.44 25.19 0.19 1.04 16 3 O -0.19 -3.56 10.73 0.43 0.00 -3.56 16 4 C 0.20 3.70 6.81 88.39 0.60 4.30 16 5 C 0.00 0.01 3.39 -11.54 -0.04 -0.03 16 6 C -0.15 -1.04 9.18 71.98 0.66 -0.38 16 7 C -0.15 -1.11 9.17 71.98 0.66 -0.45 16 8 N -0.48 -10.96 11.06 -293.03 -3.24 -14.20 16 9 C -0.11 -2.56 6.99 40.41 0.28 -2.28 16 10 C 0.60 15.98 7.81 86.66 0.68 16.66 16 11 O -0.56 -16.83 15.26 -4.08 -0.06 -16.89 16 12 N -0.70 -16.88 5.03 -442.37 -2.23 -19.11 16 13 C 0.15 3.72 3.25 45.71 0.15 3.87 16 14 H 0.09 2.35 7.56 -2.39 -0.02 2.33 16 15 C -0.12 -3.33 6.53 31.66 0.21 -3.12 16 16 C -0.11 -3.41 6.19 31.88 0.20 -3.21 16 17 C -0.09 -2.83 2.89 -9.72 -0.03 -2.86 16 18 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 19 C 0.16 6.37 5.54 86.38 0.48 6.85 16 20 N -0.74 -38.60 5.49 -343.45 -1.89 -40.49 16 21 C -0.24 -13.86 9.99 84.03 0.84 -13.02 16 22 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 23 C -0.08 -4.63 5.50 84.86 0.47 -4.17 16 24 N -0.97 -60.46 13.06 21.65 0.28 -60.18 16 25 Si 0.97 46.93 29.55 68.60 2.03 48.96 16 26 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 27 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 28 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 29 C -0.11 -2.73 6.14 31.32 0.19 -2.54 16 30 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.10 1.45 8.08 -2.39 -0.02 1.43 16 32 H 0.10 1.47 8.08 -2.39 -0.02 1.45 16 33 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 35 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 37 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 40 H 0.41 9.19 8.05 -92.71 -0.75 8.44 16 41 H 0.07 1.83 8.05 -2.39 -0.02 1.81 16 42 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 43 H 0.06 2.12 7.97 -2.39 -0.02 2.10 16 44 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.02 0.87 8.02 -2.38 -0.02 0.85 16 46 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.37 20.60 7.64 -92.71 -0.71 19.89 16 48 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 49 H 0.09 2.03 7.84 -2.39 -0.02 2.02 16 50 H 0.08 1.87 7.62 -2.39 -0.02 1.85 16 Total: -1.00 -71.89 410.18 0.57 -71.32 By element: Atomic # 1 Polarization: 34.27 SS G_CDS: -0.51 Total: 33.76 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: 6.18 Total: 0.38 kcal Atomic # 7 Polarization: -126.91 SS G_CDS: -7.07 Total: -133.98 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.06 Total: -20.45 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.96 kcal Total: -71.89 0.57 -71.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507400485.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.476 kcal (2) G-P(sol) polarization free energy of solvation -71.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds