Wall clock time and date at job start Tue Mar 31 2020 20:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.33687 * 126.27586 * 2 1 4 4 C 1.30621 * 108.99703 * 180.26631 * 3 2 1 5 5 C 1.50694 * 125.42420 * 179.74472 * 4 3 2 6 6 C 1.52999 * 109.47466 * 299.98000 * 5 4 3 7 7 C 1.53003 * 109.46870 * 59.98133 * 5 4 3 8 8 O 1.33665 * 109.14908 * 359.73316 * 4 3 2 9 9 C 1.35337 * 107.69017 * 359.97438 * 8 4 3 10 10 C 1.46723 * 126.64907 * 180.02562 * 9 8 4 11 11 O 1.21684 * 120.00150 * 180.02562 * 10 9 8 12 12 N 1.34776 * 119.99821 * 0.02783 * 10 9 8 13 13 C 1.46500 * 120.00221 * 179.97438 * 12 10 9 14 14 H 1.08994 * 110.01347 * 326.39297 * 13 12 10 15 15 C 1.54266 * 110.07202 * 87.80710 * 13 12 10 16 16 C 1.54887 * 104.19663 * 142.91903 * 15 13 12 17 17 C 1.54896 * 102.74695 * 322.05537 * 16 15 13 18 18 H 1.08996 * 110.59877 * 279.20672 * 17 16 15 19 19 C 1.53001 * 110.48395 * 156.62141 * 17 16 15 20 20 N 1.46490 * 109.47264 * 70.22508 * 19 17 16 21 21 C 1.36935 * 120.00121 * 179.97438 * 20 19 17 22 22 H 1.07997 * 120.00139 * 0.02562 * 21 20 19 23 23 C 1.38816 * 120.00401 * 180.02562 * 21 20 19 24 24 N 1.31624 * 119.99569 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00172 * 180.02562 * 23 21 20 26 26 H 1.48508 * 109.46685 * 269.99637 * 25 23 21 27 27 H 1.48494 * 109.47357 * 29.99716 * 25 23 21 28 28 H 1.48502 * 109.47120 * 150.00435 * 25 23 21 29 29 C 1.53878 * 110.03263 * 204.99763 * 13 12 10 30 30 H 1.09000 * 109.47276 * 270.19149 * 1 2 3 31 31 H 1.09002 * 109.47071 * 30.19059 * 1 2 3 32 32 H 1.09001 * 109.47433 * 150.19285 * 1 2 3 33 33 H 1.09004 * 109.46807 * 179.97438 * 5 4 3 34 34 H 1.09001 * 109.46613 * 60.00065 * 6 5 4 35 35 H 1.08998 * 109.46929 * 180.02562 * 6 5 4 36 36 H 1.08990 * 109.47157 * 300.00212 * 6 5 4 37 37 H 1.08998 * 109.47086 * 179.97438 * 7 5 4 38 38 H 1.08997 * 109.47013 * 299.99819 * 7 5 4 39 39 H 1.09005 * 109.47015 * 59.99875 * 7 5 4 40 40 H 0.97008 * 120.00017 * 359.97438 * 12 10 9 41 41 H 1.09001 * 110.49014 * 261.59896 * 15 13 12 42 42 H 1.09003 * 110.48847 * 24.10977 * 15 13 12 43 43 H 1.09003 * 110.75441 * 203.74886 * 16 15 13 44 44 H 1.08995 * 110.76068 * 80.37027 * 16 15 13 45 45 H 1.09003 * 109.46836 * 310.22215 * 19 17 16 46 46 H 1.08999 * 109.47071 * 190.23254 * 19 17 16 47 47 H 0.97000 * 120.00577 * 0.02562 * 20 19 17 48 48 H 0.97001 * 119.99885 * 359.97438 * 24 23 21 49 49 H 1.08997 * 110.02979 * 121.38317 * 29 13 12 50 50 H 1.08995 * 110.03211 * 359.95004 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0778 0.0000 4 6 3.5452 0.6898 -0.0057 5 6 4.7440 1.6029 -0.0132 6 6 4.7067 2.4835 -1.2638 7 6 4.7187 2.4879 1.2347 8 8 3.5889 -0.6461 -0.0037 9 6 2.3136 -1.0993 0.0042 10 6 1.8825 -2.5017 0.0095 11 8 0.6965 -2.7736 0.0161 12 7 2.8002 -3.4888 0.0072 13 6 2.3698 -4.8891 0.0131 14 1 1.4480 -4.9937 0.5851 15 6 2.1537 -5.3827 -1.4324 16 6 2.6517 -6.8491 -1.4116 17 6 3.8850 -6.7780 -0.4771 18 1 4.7563 -6.4110 -1.0194 19 6 4.1746 -8.1511 0.1326 20 7 4.6794 -9.0506 -0.9075 21 6 5.0095 -10.3422 -0.5945 22 1 4.8972 -10.6978 0.4190 23 6 5.4884 -11.1946 -1.5800 24 7 5.6257 -10.7610 -2.8152 25 14 5.9380 -12.9567 -1.1532 26 1 7.3667 -13.0199 -0.7529 27 1 5.0879 -13.4262 -0.0298 28 1 5.7170 -13.8247 -2.3376 29 6 3.4707 -5.7763 0.6205 30 1 -0.3634 0.0034 1.0276 31 1 -0.3633 0.8883 -0.5168 32 1 -0.3634 -0.8917 -0.5108 33 1 5.6557 1.0055 -0.0165 34 1 3.7949 3.0809 -1.2604 35 1 5.5740 3.1436 -1.2693 36 1 4.7246 1.8531 -2.1527 37 1 5.5860 3.1481 1.2295 38 1 3.8070 3.0852 1.2380 39 1 4.7453 1.8605 2.1257 40 1 3.7457 -3.2720 0.0017 41 1 1.0966 -5.3425 -1.6952 42 1 2.7423 -4.7877 -2.1307 43 1 2.9426 -7.1725 -2.4111 44 1 1.8904 -7.5098 -0.9969 45 1 3.2574 -8.5619 0.5546 46 1 4.9223 -8.0489 0.9191 47 1 4.7807 -8.7312 -1.8178 48 1 5.3919 -9.8461 -3.0368 49 1 3.0829 -6.3115 1.4873 50 1 4.3254 -5.1651 0.9101 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507417256.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:41 Heat of formation + Delta-G solvation = -29.706736 kcal Electronic energy + Delta-G solvation = -28518.782319 eV Core-core repulsion = 24546.873499 eV Total energy + Delta-G solvation = -3971.908820 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.83615 -40.11329 -38.16896 -36.39543 -35.65850 -35.00322 -33.63059 -31.48401 -31.00573 -28.84234 -28.61740 -27.76646 -27.23736 -24.77778 -24.06028 -22.44076 -22.40142 -21.12283 -20.81930 -20.45833 -19.77346 -18.44080 -17.32044 -17.21407 -16.67825 -16.58409 -15.33026 -15.21741 -15.01450 -14.90815 -14.62204 -14.10999 -13.82984 -13.72289 -13.63897 -13.55347 -13.41022 -13.33898 -13.07450 -12.75269 -12.67789 -12.32084 -12.27436 -11.99469 -11.88448 -11.67425 -11.38621 -11.30188 -11.14254 -10.98279 -10.80054 -10.73605 -10.53045 -10.39885 -10.31057 -10.27445 -9.99992 -9.43301 -9.15549 -9.05845 -8.86036 -6.98113 -6.09520 -3.08505 0.45690 1.96776 2.02309 2.78596 2.85018 3.42208 3.51942 3.57022 3.71059 4.18851 4.28577 4.41638 4.45298 4.53646 4.59401 4.68730 4.72775 4.93374 5.03043 5.08352 5.08978 5.24285 5.25152 5.35251 5.35706 5.39568 5.45577 5.50526 5.52043 5.53296 5.57397 5.63528 5.64795 5.71570 5.76281 5.78143 5.95697 5.99420 6.02551 6.07080 6.18907 6.36717 6.42268 6.48362 6.70980 6.83905 7.04860 7.28749 7.77166 7.82498 8.77235 9.25171 10.11516 10.26825 11.39328 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019915 B = 0.001918 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.636373 B =14597.287899 C =15401.180658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.083 3.917 3 N -0.483 5.483 4 C 0.226 3.774 5 C -0.001 4.001 6 C -0.145 4.145 7 C -0.144 4.144 8 O -0.188 6.188 9 C -0.122 4.122 10 C 0.609 3.391 11 O -0.514 6.514 12 N -0.709 5.709 13 C 0.140 3.860 14 H 0.095 0.905 15 C -0.134 4.134 16 C -0.111 4.111 17 C -0.098 4.098 18 H 0.074 0.926 19 C 0.166 3.834 20 N -0.743 5.743 21 C -0.330 4.330 22 H 0.064 0.936 23 C -0.047 4.047 24 N -0.945 5.945 25 Si 1.083 2.917 26 H -0.296 1.296 27 H -0.295 1.295 28 H -0.288 1.288 29 C -0.122 4.122 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.060 0.940 40 H 0.404 0.596 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.021 0.979 46 H 0.018 0.982 47 H 0.367 0.633 48 H 0.255 0.745 49 H 0.079 0.921 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.716 29.178 6.755 30.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.042 4.042 3 N -0.213 5.213 4 C 0.021 3.979 5 C -0.020 4.020 6 C -0.202 4.202 7 C -0.202 4.202 8 O -0.075 6.075 9 C -0.177 4.177 10 C 0.394 3.606 11 O -0.392 6.392 12 N -0.360 5.360 13 C 0.037 3.963 14 H 0.113 0.887 15 C -0.172 4.172 16 C -0.149 4.149 17 C -0.117 4.117 18 H 0.092 0.908 19 C 0.038 3.962 20 N -0.389 5.389 21 C -0.461 4.461 22 H 0.082 0.918 23 C -0.245 4.245 24 N -0.591 5.591 25 Si 0.914 3.086 26 H -0.224 1.224 27 H -0.222 1.222 28 H -0.214 1.214 29 C -0.161 4.161 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.114 0.886 33 H 0.120 0.880 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.239 0.761 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.039 0.961 46 H 0.035 0.965 47 H 0.200 0.800 48 H 0.066 0.934 49 H 0.098 0.902 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.153 28.008 6.400 29.188 hybrid contribution 0.270 0.944 0.418 1.067 sum -4.882 28.952 6.818 30.142 Atomic orbital electron populations 1.20398 0.85210 1.04431 1.03751 1.22096 0.98372 0.86370 0.97329 1.70286 1.00260 1.30952 1.19765 1.26607 0.95717 0.79099 0.96517 1.19805 0.90386 0.93171 0.98682 1.21856 1.03637 0.99433 0.95297 1.21855 1.03639 0.99386 0.95311 1.84448 1.29790 1.23799 1.69477 1.22940 0.81321 0.96348 1.17055 1.16319 0.85913 0.81294 0.77037 1.90861 1.15671 1.81826 1.50804 1.46184 1.09642 1.06338 1.73807 1.21837 0.98781 0.78133 0.97564 0.88676 1.22802 1.01685 0.97219 0.95530 1.22470 0.97271 0.94717 1.00396 1.22179 0.98027 0.95838 0.95705 0.90775 1.20627 0.96208 0.87605 0.91738 1.42353 1.79324 1.10103 1.07082 1.20071 1.40772 0.88716 0.96575 0.91795 1.25782 1.00074 1.05093 0.93525 1.70852 1.51599 1.18192 1.18482 0.83189 0.75843 0.74857 0.74701 1.22356 1.22173 1.21383 1.22432 0.97417 0.97057 0.99171 0.89965 0.90447 0.88574 0.88026 0.91028 0.90624 0.92078 0.90629 0.91029 0.92120 0.76085 0.91165 0.91434 0.91066 0.90967 0.96109 0.96467 0.80033 0.93425 0.90206 0.91275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 9.87 36.01 0.36 -0.42 16 2 C 0.08 0.95 7.16 -82.47 -0.59 0.36 16 3 N -0.48 -5.32 11.26 -7.07 -0.08 -5.40 16 4 C 0.23 2.16 6.82 -12.80 -0.09 2.07 16 5 C 0.00 -0.01 3.39 -91.77 -0.31 -0.32 16 6 C -0.14 -0.72 9.18 37.16 0.34 -0.37 16 7 C -0.14 -0.69 9.18 37.16 0.34 -0.35 16 8 O -0.19 -2.01 10.57 4.44 0.05 -1.96 16 9 C -0.12 -1.44 7.18 -36.84 -0.26 -1.70 16 10 C 0.61 7.62 7.79 -12.83 -0.10 7.52 16 11 O -0.51 -7.49 14.45 5.20 0.08 -7.41 16 12 N -0.71 -7.83 5.03 -54.01 -0.27 -8.10 16 13 C 0.14 1.67 3.24 -66.81 -0.22 1.46 16 14 H 0.10 1.20 7.56 -51.93 -0.39 0.81 16 15 C -0.13 -1.71 6.53 -25.07 -0.16 -1.87 16 16 C -0.11 -1.66 6.19 -24.74 -0.15 -1.81 16 17 C -0.10 -1.52 2.89 -88.96 -0.26 -1.77 16 18 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 19 C 0.17 3.32 5.54 -4.05 -0.02 3.29 16 20 N -0.74 -18.81 5.49 -59.91 -0.33 -19.14 16 21 C -0.33 -9.45 9.99 -15.06 -0.15 -9.60 16 22 H 0.06 1.81 7.83 -52.49 -0.41 1.40 16 23 C -0.05 -1.40 5.50 -17.43 -0.10 -1.49 16 24 N -0.95 -29.49 13.70 55.49 0.76 -28.73 16 25 Si 1.08 26.23 29.92 -169.99 -5.09 21.14 16 26 H -0.30 -6.95 7.11 56.52 0.40 -6.55 16 27 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 28 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 29 C -0.12 -1.49 6.14 -25.61 -0.16 -1.64 16 30 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.10 1.00 6.48 -51.93 -0.34 0.67 16 33 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 40 H 0.40 3.82 8.12 -40.82 -0.33 3.49 16 41 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.07 0.85 8.05 -51.93 -0.42 0.43 16 43 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.07 1.13 7.96 -51.93 -0.41 0.72 16 45 H 0.02 0.43 8.02 -51.93 -0.42 0.01 16 46 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 47 H 0.37 9.44 6.47 -40.82 -0.26 9.18 16 48 H 0.25 7.80 6.77 -40.82 -0.28 7.52 16 49 H 0.08 0.96 7.84 -51.93 -0.41 0.55 16 50 H 0.07 0.75 7.62 -51.93 -0.40 0.35 16 LS Contribution 406.88 15.07 6.13 6.13 Total: -1.00 -34.06 406.88 -8.64 -42.70 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -8.35 Total: 7.43 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: -1.53 Total: -6.65 kcal Atomic # 7 Polarization: -61.45 SS G_CDS: 0.08 Total: -61.37 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.12 Total: -9.38 kcal Atomic # 14 Polarization: 26.23 SS G_CDS: -5.09 Total: 21.14 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.06 -8.64 -42.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507417256.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.992 kcal (2) G-P(sol) polarization free energy of solvation -34.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds