Wall clock time and date at job start Tue Mar 31 2020 20:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.33687 * 126.27586 * 2 1 4 4 C 1.30621 * 108.99703 * 180.26631 * 3 2 1 5 5 C 1.50694 * 125.42420 * 179.74472 * 4 3 2 6 6 C 1.52999 * 109.47466 * 299.98000 * 5 4 3 7 7 C 1.53003 * 109.46870 * 59.98133 * 5 4 3 8 8 O 1.33665 * 109.14908 * 359.73316 * 4 3 2 9 9 C 1.35337 * 107.69017 * 359.97438 * 8 4 3 10 10 C 1.46723 * 126.64907 * 180.02562 * 9 8 4 11 11 O 1.21684 * 120.00150 * 180.02562 * 10 9 8 12 12 N 1.34776 * 119.99821 * 0.02783 * 10 9 8 13 13 C 1.46500 * 120.00221 * 179.97438 * 12 10 9 14 14 H 1.08994 * 110.01347 * 326.39297 * 13 12 10 15 15 C 1.54266 * 110.07202 * 87.80710 * 13 12 10 16 16 C 1.54887 * 104.19663 * 142.91903 * 15 13 12 17 17 C 1.54896 * 102.74695 * 322.05537 * 16 15 13 18 18 H 1.08996 * 110.59877 * 279.20672 * 17 16 15 19 19 C 1.53001 * 110.48395 * 156.62141 * 17 16 15 20 20 N 1.46490 * 109.47264 * 70.22508 * 19 17 16 21 21 C 1.36935 * 120.00121 * 179.97438 * 20 19 17 22 22 H 1.07997 * 120.00139 * 0.02562 * 21 20 19 23 23 C 1.38816 * 120.00401 * 180.02562 * 21 20 19 24 24 N 1.31624 * 119.99569 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00172 * 180.02562 * 23 21 20 26 26 H 1.48508 * 109.46685 * 269.99637 * 25 23 21 27 27 H 1.48494 * 109.47357 * 29.99716 * 25 23 21 28 28 H 1.48502 * 109.47120 * 150.00435 * 25 23 21 29 29 C 1.53878 * 110.03263 * 204.99763 * 13 12 10 30 30 H 1.09000 * 109.47276 * 270.19149 * 1 2 3 31 31 H 1.09002 * 109.47071 * 30.19059 * 1 2 3 32 32 H 1.09001 * 109.47433 * 150.19285 * 1 2 3 33 33 H 1.09004 * 109.46807 * 179.97438 * 5 4 3 34 34 H 1.09001 * 109.46613 * 60.00065 * 6 5 4 35 35 H 1.08998 * 109.46929 * 180.02562 * 6 5 4 36 36 H 1.08990 * 109.47157 * 300.00212 * 6 5 4 37 37 H 1.08998 * 109.47086 * 179.97438 * 7 5 4 38 38 H 1.08997 * 109.47013 * 299.99819 * 7 5 4 39 39 H 1.09005 * 109.47015 * 59.99875 * 7 5 4 40 40 H 0.97008 * 120.00017 * 359.97438 * 12 10 9 41 41 H 1.09001 * 110.49014 * 261.59896 * 15 13 12 42 42 H 1.09003 * 110.48847 * 24.10977 * 15 13 12 43 43 H 1.09003 * 110.75441 * 203.74886 * 16 15 13 44 44 H 1.08995 * 110.76068 * 80.37027 * 16 15 13 45 45 H 1.09003 * 109.46836 * 310.22215 * 19 17 16 46 46 H 1.08999 * 109.47071 * 190.23254 * 19 17 16 47 47 H 0.97000 * 120.00577 * 0.02562 * 20 19 17 48 48 H 0.97001 * 119.99885 * 359.97438 * 24 23 21 49 49 H 1.08997 * 110.02979 * 121.38317 * 29 13 12 50 50 H 1.08995 * 110.03211 * 359.95004 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0778 0.0000 4 6 3.5452 0.6898 -0.0057 5 6 4.7440 1.6029 -0.0132 6 6 4.7067 2.4835 -1.2638 7 6 4.7187 2.4879 1.2347 8 8 3.5889 -0.6461 -0.0037 9 6 2.3136 -1.0993 0.0042 10 6 1.8825 -2.5017 0.0095 11 8 0.6965 -2.7736 0.0161 12 7 2.8002 -3.4888 0.0072 13 6 2.3698 -4.8891 0.0131 14 1 1.4480 -4.9937 0.5851 15 6 2.1537 -5.3827 -1.4324 16 6 2.6517 -6.8491 -1.4116 17 6 3.8850 -6.7780 -0.4771 18 1 4.7563 -6.4110 -1.0194 19 6 4.1746 -8.1511 0.1326 20 7 4.6794 -9.0506 -0.9075 21 6 5.0095 -10.3422 -0.5945 22 1 4.8972 -10.6978 0.4190 23 6 5.4884 -11.1946 -1.5800 24 7 5.6257 -10.7610 -2.8152 25 14 5.9380 -12.9567 -1.1532 26 1 7.3667 -13.0199 -0.7529 27 1 5.0879 -13.4262 -0.0298 28 1 5.7170 -13.8247 -2.3376 29 6 3.4707 -5.7763 0.6205 30 1 -0.3634 0.0034 1.0276 31 1 -0.3633 0.8883 -0.5168 32 1 -0.3634 -0.8917 -0.5108 33 1 5.6557 1.0055 -0.0165 34 1 3.7949 3.0809 -1.2604 35 1 5.5740 3.1436 -1.2693 36 1 4.7246 1.8531 -2.1527 37 1 5.5860 3.1481 1.2295 38 1 3.8070 3.0852 1.2380 39 1 4.7453 1.8605 2.1257 40 1 3.7457 -3.2720 0.0017 41 1 1.0966 -5.3425 -1.6952 42 1 2.7423 -4.7877 -2.1307 43 1 2.9426 -7.1725 -2.4111 44 1 1.8904 -7.5098 -0.9969 45 1 3.2574 -8.5619 0.5546 46 1 4.9223 -8.0489 0.9191 47 1 4.7807 -8.7312 -1.8178 48 1 5.3919 -9.8461 -3.0368 49 1 3.0829 -6.3115 1.4873 50 1 4.3254 -5.1651 0.9101 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507417256.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:40 Heat of formation + Delta-G solvation = -53.330445 kcal Electronic energy + Delta-G solvation = -28519.806720 eV Core-core repulsion = 24546.873499 eV Total energy + Delta-G solvation = -3972.933221 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.63176 -41.12181 -39.34656 -36.99317 -36.83509 -36.25934 -34.97388 -32.97469 -32.09049 -30.14025 -29.71104 -28.31459 -28.13554 -26.08952 -25.29164 -24.22315 -23.27902 -21.97109 -21.57498 -21.40228 -21.05924 -19.45207 -19.21689 -18.13083 -17.61418 -17.35195 -16.93636 -16.35811 -15.85038 -15.79829 -15.68903 -15.33193 -15.25275 -15.10297 -14.91872 -14.46888 -14.35676 -14.21627 -14.09429 -13.72344 -13.39149 -13.12884 -13.07683 -12.80478 -12.75116 -12.62030 -12.53638 -12.35044 -12.23403 -12.12131 -12.01691 -11.90705 -11.85819 -11.81663 -11.74369 -11.62651 -11.31284 -11.20188 -10.91961 -10.39689 -9.90586 -9.10438 -8.40973 -5.34084 -0.38406 1.17997 1.22022 1.57806 1.68693 1.83001 1.85754 1.96690 2.70719 2.72758 3.38388 3.41521 3.45713 3.53983 3.58089 3.77267 3.89402 3.96308 4.00109 4.06375 4.30459 4.33505 4.38921 4.39336 4.41477 4.50176 4.53502 4.62490 4.65140 4.71485 4.74415 4.76729 4.78127 4.87400 4.89476 4.94838 4.96453 5.03582 5.04953 5.10548 5.18192 5.25923 5.28209 5.35248 5.39135 5.43193 5.58461 6.17016 6.46582 6.49141 6.85102 7.09703 8.00757 8.11312 9.11371 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019915 B = 0.001918 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.636373 B =14597.287899 C =15401.180658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.076 3.924 3 N -0.502 5.502 4 C 0.234 3.766 5 C -0.003 4.003 6 C -0.141 4.141 7 C -0.140 4.140 8 O -0.191 6.191 9 C -0.141 4.141 10 C 0.610 3.390 11 O -0.539 6.539 12 N -0.700 5.700 13 C 0.149 3.851 14 H 0.092 0.908 15 C -0.124 4.124 16 C -0.109 4.109 17 C -0.090 4.090 18 H 0.071 0.929 19 C 0.163 3.837 20 N -0.756 5.756 21 C -0.335 4.335 22 H 0.065 0.935 23 C -0.107 4.107 24 N -0.975 5.975 25 Si 1.131 2.869 26 H -0.284 1.284 27 H -0.274 1.274 28 H -0.293 1.293 29 C -0.110 4.110 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.121 0.879 34 H 0.059 0.941 35 H 0.100 0.900 36 H 0.053 0.947 37 H 0.100 0.900 38 H 0.059 0.941 39 H 0.055 0.945 40 H 0.413 0.587 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.053 0.947 44 H 0.063 0.937 45 H 0.019 0.981 46 H 0.019 0.981 47 H 0.361 0.639 48 H 0.244 0.756 49 H 0.086 0.914 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.860 30.509 7.968 31.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.049 4.049 3 N -0.231 5.231 4 C 0.028 3.972 5 C -0.023 4.023 6 C -0.199 4.199 7 C -0.198 4.198 8 O -0.078 6.078 9 C -0.196 4.196 10 C 0.397 3.603 11 O -0.419 6.419 12 N -0.350 5.350 13 C 0.045 3.955 14 H 0.110 0.890 15 C -0.162 4.162 16 C -0.147 4.147 17 C -0.109 4.109 18 H 0.089 0.911 19 C 0.037 3.963 20 N -0.401 5.401 21 C -0.466 4.466 22 H 0.083 0.917 23 C -0.298 4.298 24 N -0.624 5.624 25 Si 0.956 3.044 26 H -0.210 1.210 27 H -0.199 1.199 28 H -0.219 1.219 29 C -0.149 4.149 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.104 0.896 33 H 0.139 0.861 34 H 0.078 0.922 35 H 0.119 0.881 36 H 0.072 0.928 37 H 0.119 0.881 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.250 0.750 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.071 0.929 44 H 0.082 0.918 45 H 0.037 0.963 46 H 0.037 0.963 47 H 0.193 0.807 48 H 0.054 0.946 49 H 0.104 0.896 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.296 29.382 7.652 30.664 hybrid contribution 0.010 0.641 0.068 0.644 sum -4.286 30.022 7.720 31.294 Atomic orbital electron populations 1.20411 0.84320 1.04498 1.04272 1.22459 0.99247 0.86575 0.96588 1.70326 1.00929 1.30904 1.20937 1.27537 0.96480 0.79004 0.94150 1.20145 0.89506 0.93035 0.99570 1.21856 1.04243 0.99324 0.94457 1.21853 1.04224 0.99267 0.94456 1.84444 1.29231 1.24375 1.69740 1.22777 0.81907 0.96081 1.18846 1.16379 0.85665 0.81723 0.76570 1.90845 1.16664 1.82315 1.52068 1.46052 1.10021 1.05677 1.73292 1.21653 0.98595 0.78527 0.96712 0.88966 1.22698 1.01629 0.95535 0.96366 1.22390 0.96954 0.96119 0.99225 1.22045 0.98075 0.94085 0.96668 0.91066 1.20804 0.95609 0.89075 0.90800 1.42575 1.79485 1.10032 1.07965 1.20435 1.39490 0.90133 0.96558 0.91660 1.27244 1.00440 1.08967 0.93132 1.70965 1.53788 1.17871 1.19751 0.82581 0.76509 0.70444 0.74914 1.21033 1.19887 1.21927 1.22329 0.98208 0.96365 0.97966 0.89162 0.89188 0.89585 0.86119 0.92163 0.88109 0.92755 0.88127 0.92183 0.92592 0.74964 0.91155 0.91047 0.92865 0.91829 0.96288 0.96318 0.80710 0.94560 0.89573 0.89215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.46 9.87 71.24 0.70 -0.76 16 2 C 0.08 1.71 7.16 41.84 0.30 2.01 16 3 N -0.50 -10.66 11.26 -291.06 -3.28 -13.94 16 4 C 0.23 4.16 6.82 88.29 0.60 4.77 16 5 C 0.00 -0.03 3.39 -11.54 -0.04 -0.07 16 6 C -0.14 -1.12 9.18 71.98 0.66 -0.46 16 7 C -0.14 -1.05 9.18 71.98 0.66 -0.39 16 8 O -0.19 -3.84 10.57 -7.03 -0.07 -3.92 16 9 C -0.14 -3.25 7.18 24.05 0.17 -3.08 16 10 C 0.61 14.82 7.79 86.46 0.67 15.50 16 11 O -0.54 -15.54 14.45 -4.30 -0.06 -15.60 16 12 N -0.70 -14.41 5.03 -443.03 -2.23 -16.64 16 13 C 0.15 3.34 3.24 45.72 0.15 3.49 16 14 H 0.09 2.21 7.56 -2.39 -0.02 2.19 16 15 C -0.12 -3.06 6.53 31.67 0.21 -2.85 16 16 C -0.11 -3.26 6.19 31.89 0.20 -3.06 16 17 C -0.09 -2.70 2.89 -9.72 -0.03 -2.72 16 18 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 19 C 0.16 6.46 5.54 86.38 0.48 6.94 16 20 N -0.76 -38.59 5.49 -343.47 -1.89 -40.47 16 21 C -0.33 -19.16 9.99 84.03 0.84 -18.32 16 22 H 0.07 3.65 7.83 -2.91 -0.02 3.63 16 23 C -0.11 -6.29 5.50 84.86 0.47 -5.82 16 24 N -0.98 -61.69 13.70 21.65 0.30 -61.40 16 25 Si 1.13 52.48 29.92 68.60 2.05 54.53 16 26 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 27 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 28 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 29 C -0.11 -2.46 6.14 31.32 0.19 -2.27 16 30 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.09 1.80 6.48 -2.39 -0.02 1.79 16 33 H 0.12 0.72 8.14 -2.38 -0.02 0.70 16 34 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 36 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 38 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.05 0.48 8.14 -2.38 -0.02 0.46 16 40 H 0.41 7.00 8.12 -92.70 -0.75 6.25 16 41 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.07 1.73 8.05 -2.39 -0.02 1.71 16 43 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.06 2.00 7.96 -2.39 -0.02 1.98 16 45 H 0.02 0.77 8.02 -2.39 -0.02 0.75 16 46 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.36 19.02 6.47 -92.71 -0.60 18.42 16 48 H 0.24 15.35 6.77 -92.71 -0.63 14.72 16 49 H 0.09 1.88 7.84 -2.39 -0.02 1.86 16 50 H 0.09 1.68 7.62 -2.39 -0.02 1.66 16 Total: -1.00 -73.45 406.88 0.79 -72.65 By element: Atomic # 1 Polarization: 32.16 SS G_CDS: -0.26 Total: 31.90 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: 6.23 Total: -7.11 kcal Atomic # 7 Polarization: -125.36 SS G_CDS: -7.10 Total: -132.45 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.14 Total: -19.52 kcal Atomic # 14 Polarization: 52.48 SS G_CDS: 2.05 Total: 54.53 kcal Total: -73.45 0.79 -72.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507417256.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.324 kcal (2) G-P(sol) polarization free energy of solvation -73.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds