Wall clock time and date at job start Tue Mar 31 2020 18:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 110.38953 * 2 1 4 4 C 1.54385 * 110.34630 * 122.23327 * 2 1 3 5 5 N 1.48147 * 104.61551 * 95.00051 * 4 2 1 6 6 C 1.34783 * 127.84093 * 219.58631 * 5 4 2 7 7 O 1.21610 * 120.00086 * 183.60546 * 6 5 4 8 8 C 1.47104 * 119.99757 * 3.60422 * 6 5 4 9 9 C 1.32876 * 124.77252 * 173.39249 * 8 6 5 10 10 C 1.51107 * 110.80352 * 179.97438 * 9 8 6 11 11 C 1.54581 * 104.83803 * 343.42568 * 10 9 8 12 12 C 1.51119 * 124.61979 * 353.41298 * 8 6 5 13 13 C 1.48142 * 104.32471 * 39.85095 * 5 4 2 14 14 C 1.54292 * 110.34198 * 237.77141 * 2 1 3 15 15 H 1.09000 * 110.33734 * 0.02562 * 14 2 1 16 16 N 1.46901 * 110.34224 * 122.14968 * 14 2 1 17 17 C 1.46899 * 110.99722 * 205.00200 * 16 14 2 18 18 C 1.50707 * 109.46706 * 180.02562 * 17 16 14 19 19 O 1.21285 * 120.00026 * 0.02562 * 18 17 16 20 20 N 1.34775 * 119.99607 * 179.97438 * 18 17 16 21 21 C 1.37100 * 119.99839 * 179.97438 * 20 18 17 22 22 H 1.07999 * 120.00225 * 359.97438 * 21 20 18 23 23 C 1.38955 * 119.99994 * 180.02562 * 21 20 18 24 24 N 1.31413 * 119.99821 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00024 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47324 * 0.02562 * 25 23 21 27 27 H 1.48507 * 109.46873 * 119.99900 * 25 23 21 28 28 H 1.48500 * 109.47539 * 239.99964 * 25 23 21 29 29 H 1.09003 * 109.47045 * 299.21807 * 1 2 3 30 30 H 1.08994 * 109.47348 * 59.21626 * 1 2 3 31 31 H 1.09002 * 109.47428 * 179.22134 * 1 2 3 32 32 H 1.08999 * 109.47074 * 180.78145 * 3 2 1 33 33 H 1.08995 * 109.46835 * 300.78006 * 3 2 1 34 34 H 1.09001 * 109.47041 * 60.78443 * 3 2 1 35 35 H 1.08992 * 110.40759 * 336.22168 * 4 2 1 36 36 H 1.08994 * 110.50925 * 213.83336 * 4 2 1 37 37 H 1.07997 * 124.57220 * 359.97438 * 9 8 6 38 38 H 1.09002 * 110.36668 * 224.59223 * 10 9 8 39 39 H 1.08992 * 110.36709 * 102.26603 * 10 9 8 40 40 H 1.09001 * 110.98478 * 266.92835 * 11 10 9 41 41 H 1.08998 * 111.01292 * 143.14707 * 11 10 9 42 42 H 1.09000 * 110.36356 * 77.73105 * 12 8 6 43 43 H 1.08998 * 110.36229 * 315.52547 * 12 8 6 44 44 H 1.09002 * 110.41312 * 78.93441 * 13 5 4 45 45 H 1.09002 * 110.40653 * 201.36976 * 13 5 4 46 46 H 1.00903 * 110.99933 * 81.04986 * 16 14 2 47 47 H 1.09001 * 109.46875 * 300.00051 * 17 16 14 48 48 H 1.09000 * 109.47317 * 60.00386 * 17 16 14 49 49 H 0.97001 * 120.00313 * 0.02562 * 20 18 17 50 50 H 0.97004 * 119.99842 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0630 1.4342 0.0000 4 6 2.0667 -0.7721 1.2244 5 7 2.3139 -2.1438 0.7225 6 6 2.0773 -3.3106 1.3543 7 8 2.3969 -4.3610 0.8314 8 6 1.4326 -3.3135 2.6765 9 6 1.0423 -4.4045 3.3270 10 6 0.4196 -4.0432 4.6556 11 6 0.8647 -2.5864 4.9183 12 6 1.1220 -2.0738 3.4830 13 6 2.8861 -1.9420 -0.6290 14 6 2.0663 -0.7715 -1.2238 15 1 1.2397 -1.1500 -1.8251 16 7 2.9311 0.0955 -2.0352 17 6 2.9703 -0.3587 -3.4317 18 6 3.8656 0.5525 -4.2313 19 8 4.4170 1.4879 -3.6909 20 7 4.0543 0.3274 -5.5466 21 6 4.8683 1.1566 -6.2742 22 1 5.3580 1.9905 -5.7934 23 6 5.0624 0.9248 -7.6304 24 7 4.4653 -0.0889 -8.2158 25 14 6.1709 2.0551 -8.6218 26 1 6.7191 3.1131 -7.7356 27 1 7.2886 1.2680 -9.2021 28 1 5.3870 2.6824 -9.7160 29 1 -0.3633 0.5017 0.8969 30 1 -0.3634 0.5259 -0.8828 31 1 -0.3634 -1.0276 -0.0140 32 1 3.1528 1.4167 -0.0140 33 1 1.6966 1.9579 -0.8829 34 1 1.7194 1.9495 0.8969 35 1 1.3224 -0.7871 2.0205 36 1 2.9946 -0.3250 1.5811 37 1 1.1552 -5.4124 2.9560 38 1 0.7924 -4.7011 5.4407 39 1 -0.6670 -4.1026 4.5939 40 1 1.7780 -2.5584 5.5125 41 1 0.0705 -2.0159 5.4000 42 1 0.2330 -1.5794 3.0914 43 1 1.9714 -1.3907 3.4708 44 1 3.9403 -1.6740 -0.5593 45 1 2.7606 -2.8407 -1.2329 46 1 3.8603 0.1463 -1.6452 47 1 3.3590 -1.3763 -3.4719 48 1 1.9636 -0.3374 -3.8491 49 1 3.6135 -0.4209 -5.9787 50 1 4.6011 -0.2510 -9.1625 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507432728.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:48 Heat of formation + Delta-G solvation = -40.605972 kcal Electronic energy + Delta-G solvation = -29365.723063 eV Core-core repulsion = 25393.341617 eV Total energy + Delta-G solvation = -3972.381447 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.77750 -39.11083 -38.09817 -37.68727 -34.74235 -33.83898 -33.36868 -31.22506 -30.25402 -29.41288 -28.16740 -27.42498 -26.55150 -25.92776 -24.14227 -22.83483 -21.54450 -20.95774 -19.43035 -18.88705 -18.66686 -17.89465 -17.04787 -16.32051 -16.15715 -15.91315 -15.66274 -15.40859 -14.55666 -14.45921 -14.14988 -14.05526 -13.91353 -13.85276 -13.56960 -13.21418 -13.11397 -12.83177 -12.46114 -12.43350 -12.28889 -12.10526 -12.07120 -11.89085 -11.76585 -11.64515 -11.62651 -11.50728 -11.33334 -11.07773 -10.89593 -10.70248 -10.48613 -10.34419 -10.22308 -10.04844 -9.52083 -9.35556 -8.86699 -8.46420 -8.07102 -7.95992 -6.41732 -3.82563 1.08198 2.74883 3.06310 3.16391 3.27017 3.34111 3.90480 3.98023 4.08712 4.14415 4.28000 4.34785 4.49422 4.55897 4.64301 4.80455 4.87816 5.04236 5.08119 5.15950 5.16886 5.20465 5.25624 5.28199 5.30313 5.34636 5.40629 5.52396 5.55677 5.62219 5.67136 5.69361 5.72816 5.77746 5.80770 5.94193 5.96030 5.98030 6.06024 6.16751 6.18293 6.25918 6.31075 6.61684 7.17540 7.38690 7.55392 7.58288 7.99523 8.06262 8.60813 9.17806 9.54316 10.05263 10.76007 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.026226 B = 0.002144 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.401955 B =13057.812082 C =13650.608486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.070 4.070 3 C -0.116 4.116 4 C 0.086 3.914 5 N -0.612 5.612 6 C 0.584 3.416 7 O -0.545 6.545 8 C -0.188 4.188 9 C -0.075 4.075 10 C -0.107 4.107 11 C -0.125 4.125 12 C -0.095 4.095 13 C 0.076 3.924 14 C 0.082 3.918 15 H 0.090 0.910 16 N -0.649 5.649 17 C 0.047 3.953 18 C 0.442 3.558 19 O -0.583 6.583 20 N -0.564 5.564 21 C -0.298 4.298 22 H 0.104 0.896 23 C 0.021 3.979 24 N -0.901 5.901 25 Si 0.930 3.070 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.281 1.281 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.042 0.958 35 H 0.099 0.901 36 H 0.074 0.926 37 H 0.137 0.863 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.073 0.927 45 H 0.083 0.917 46 H 0.351 0.649 47 H 0.044 0.956 48 H 0.087 0.913 49 H 0.392 0.608 50 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.074 -5.320 24.851 27.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.071 4.071 3 C -0.174 4.174 4 C -0.037 4.037 5 N -0.345 5.345 6 C 0.375 3.625 7 O -0.424 6.424 8 C -0.191 4.191 9 C -0.095 4.095 10 C -0.144 4.144 11 C -0.163 4.163 12 C -0.131 4.131 13 C -0.049 4.049 14 C -0.030 4.030 15 H 0.108 0.892 16 N -0.281 5.281 17 C -0.086 4.086 18 C 0.227 3.773 19 O -0.468 6.468 20 N -0.200 5.200 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.542 5.542 25 Si 0.757 3.243 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.061 0.939 35 H 0.117 0.883 36 H 0.092 0.908 37 H 0.155 0.845 38 H 0.098 0.902 39 H 0.104 0.896 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.101 0.899 43 H 0.099 0.901 44 H 0.091 0.909 45 H 0.101 0.899 46 H 0.172 0.828 47 H 0.062 0.938 48 H 0.105 0.895 49 H 0.225 0.775 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.008 -4.910 24.647 27.436 hybrid contribution 0.875 -0.870 -0.985 1.579 sum -10.133 -5.780 23.662 26.381 Atomic orbital electron populations 1.21834 0.93723 1.01447 1.02221 1.21532 0.95858 0.96584 0.93154 1.21524 1.01350 0.93145 1.01383 1.23248 1.01598 0.80976 0.97867 1.48689 1.62493 1.05625 1.17679 1.17594 0.78350 0.82027 0.84497 1.90808 1.53308 1.30748 1.67551 1.21797 1.04760 0.97174 0.95388 1.24118 0.92195 0.98504 0.94688 1.21478 1.00895 0.97027 0.94959 1.22483 1.01912 0.95467 0.96422 1.21572 1.01903 0.95744 0.93901 1.23354 0.97700 1.00421 0.83424 1.22715 0.96186 0.89969 0.94116 0.89174 1.60332 1.17135 1.49768 1.00828 1.21765 1.00771 0.96590 0.89457 1.19771 0.86327 0.88003 0.83206 1.90520 1.52880 1.32921 1.70440 1.41877 1.42847 1.28318 1.06986 1.19747 1.22914 1.09350 0.90787 0.87854 1.25276 0.98315 0.97382 0.97065 1.69624 1.43519 1.28874 1.12228 0.85799 0.79383 0.79787 0.79363 1.19215 1.20791 1.20752 0.92526 0.91808 0.93026 0.92183 0.90785 0.93921 0.88344 0.90795 0.84479 0.90167 0.89587 0.90754 0.90396 0.89884 0.90145 0.90862 0.89885 0.82790 0.93756 0.89505 0.77459 0.91919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.19 8.24 37.15 0.31 -0.89 16 2 C -0.07 -0.69 1.03 -153.11 -0.16 -0.85 16 3 C -0.12 -1.24 7.45 37.16 0.28 -0.97 16 4 C 0.09 0.77 4.95 -2.41 -0.01 0.76 16 5 N -0.61 -7.15 3.31 -170.45 -0.56 -7.71 16 6 C 0.58 7.72 7.88 -12.66 -0.10 7.62 16 7 O -0.55 -9.29 17.08 5.27 0.09 -9.20 16 8 C -0.19 -1.84 6.07 -102.67 -0.62 -2.46 16 9 C -0.08 -0.64 10.45 -35.96 -0.38 -1.01 16 10 C -0.11 -0.58 6.80 -26.85 -0.18 -0.76 16 11 C -0.13 -0.64 7.16 -25.07 -0.18 -0.81 16 12 C -0.09 -0.63 4.47 -26.85 -0.12 -0.75 16 13 C 0.08 0.94 6.72 -2.20 -0.01 0.93 16 14 C 0.08 0.98 3.03 -66.09 -0.20 0.78 16 15 H 0.09 1.10 7.39 -51.93 -0.38 0.72 16 16 N -0.65 -9.64 4.20 -106.28 -0.45 -10.09 16 17 C 0.05 0.79 6.02 -4.97 -0.03 0.76 16 18 C 0.44 10.20 7.82 -10.98 -0.09 10.11 16 19 O -0.58 -15.42 15.78 5.55 0.09 -15.33 16 20 N -0.56 -14.20 5.29 -10.96 -0.06 -14.26 16 21 C -0.30 -8.30 9.68 -14.93 -0.14 -8.45 16 22 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 23 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 24 N -0.90 -24.61 13.05 55.50 0.72 -23.89 16 25 Si 0.93 21.09 29.55 -169.99 -5.02 16.07 16 26 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 28 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.70 7.40 -51.93 -0.38 0.32 16 33 H 0.07 0.95 7.96 -51.93 -0.41 0.54 16 34 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.10 0.71 3.57 -51.93 -0.19 0.52 16 36 H 0.07 0.64 7.87 -51.93 -0.41 0.23 16 37 H 0.14 1.20 8.05 -52.49 -0.42 0.78 16 38 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.08 0.49 7.25 -51.93 -0.38 0.11 16 43 H 0.08 0.51 6.49 -51.93 -0.34 0.18 16 44 H 0.07 0.92 7.57 -51.93 -0.39 0.53 16 45 H 0.08 1.14 7.91 -51.93 -0.41 0.73 16 46 H 0.35 5.46 7.34 -39.29 -0.29 5.17 16 47 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.09 1.38 8.07 -51.93 -0.42 0.96 16 49 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 50 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 396.35 15.07 5.97 5.97 Total: -1.00 -32.98 396.35 -9.02 -42.00 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: -8.06 Total: 11.95 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: -1.74 Total: 4.49 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: -0.34 Total: -55.95 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: 0.18 Total: -24.54 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.98 -9.02 -42.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507432728.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.392 kcal (2) G-P(sol) polarization free energy of solvation -32.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds