Wall clock time and date at job start Tue Mar 31 2020 18:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 110.38953 * 2 1 4 4 C 1.54385 * 110.34630 * 122.23327 * 2 1 3 5 5 N 1.48147 * 104.61551 * 95.00051 * 4 2 1 6 6 C 1.34783 * 127.84093 * 219.58631 * 5 4 2 7 7 O 1.21610 * 120.00086 * 183.60546 * 6 5 4 8 8 C 1.47104 * 119.99757 * 3.60422 * 6 5 4 9 9 C 1.32876 * 124.77252 * 173.39249 * 8 6 5 10 10 C 1.51107 * 110.80352 * 179.97438 * 9 8 6 11 11 C 1.54581 * 104.83803 * 343.42568 * 10 9 8 12 12 C 1.51119 * 124.61979 * 353.41298 * 8 6 5 13 13 C 1.48142 * 104.32471 * 39.85095 * 5 4 2 14 14 C 1.54292 * 110.34198 * 237.77141 * 2 1 3 15 15 H 1.09000 * 110.33734 * 0.02562 * 14 2 1 16 16 N 1.46901 * 110.34224 * 122.14968 * 14 2 1 17 17 C 1.46899 * 110.99722 * 205.00200 * 16 14 2 18 18 C 1.50707 * 109.46706 * 180.02562 * 17 16 14 19 19 O 1.21285 * 120.00026 * 0.02562 * 18 17 16 20 20 N 1.34775 * 119.99607 * 179.97438 * 18 17 16 21 21 C 1.37100 * 119.99839 * 179.97438 * 20 18 17 22 22 H 1.07999 * 120.00225 * 359.97438 * 21 20 18 23 23 C 1.38955 * 119.99994 * 180.02562 * 21 20 18 24 24 N 1.31413 * 119.99821 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00024 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47324 * 0.02562 * 25 23 21 27 27 H 1.48507 * 109.46873 * 119.99900 * 25 23 21 28 28 H 1.48500 * 109.47539 * 239.99964 * 25 23 21 29 29 H 1.09003 * 109.47045 * 299.21807 * 1 2 3 30 30 H 1.08994 * 109.47348 * 59.21626 * 1 2 3 31 31 H 1.09002 * 109.47428 * 179.22134 * 1 2 3 32 32 H 1.08999 * 109.47074 * 180.78145 * 3 2 1 33 33 H 1.08995 * 109.46835 * 300.78006 * 3 2 1 34 34 H 1.09001 * 109.47041 * 60.78443 * 3 2 1 35 35 H 1.08992 * 110.40759 * 336.22168 * 4 2 1 36 36 H 1.08994 * 110.50925 * 213.83336 * 4 2 1 37 37 H 1.07997 * 124.57220 * 359.97438 * 9 8 6 38 38 H 1.09002 * 110.36668 * 224.59223 * 10 9 8 39 39 H 1.08992 * 110.36709 * 102.26603 * 10 9 8 40 40 H 1.09001 * 110.98478 * 266.92835 * 11 10 9 41 41 H 1.08998 * 111.01292 * 143.14707 * 11 10 9 42 42 H 1.09000 * 110.36356 * 77.73105 * 12 8 6 43 43 H 1.08998 * 110.36229 * 315.52547 * 12 8 6 44 44 H 1.09002 * 110.41312 * 78.93441 * 13 5 4 45 45 H 1.09002 * 110.40653 * 201.36976 * 13 5 4 46 46 H 1.00903 * 110.99933 * 81.04986 * 16 14 2 47 47 H 1.09001 * 109.46875 * 300.00051 * 17 16 14 48 48 H 1.09000 * 109.47317 * 60.00386 * 17 16 14 49 49 H 0.97001 * 120.00313 * 0.02562 * 20 18 17 50 50 H 0.97004 * 119.99842 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0630 1.4342 0.0000 4 6 2.0667 -0.7721 1.2244 5 7 2.3139 -2.1438 0.7225 6 6 2.0773 -3.3106 1.3543 7 8 2.3969 -4.3610 0.8314 8 6 1.4326 -3.3135 2.6765 9 6 1.0423 -4.4045 3.3270 10 6 0.4196 -4.0432 4.6556 11 6 0.8647 -2.5864 4.9183 12 6 1.1220 -2.0738 3.4830 13 6 2.8861 -1.9420 -0.6290 14 6 2.0663 -0.7715 -1.2238 15 1 1.2397 -1.1500 -1.8251 16 7 2.9311 0.0955 -2.0352 17 6 2.9703 -0.3587 -3.4317 18 6 3.8656 0.5525 -4.2313 19 8 4.4170 1.4879 -3.6909 20 7 4.0543 0.3274 -5.5466 21 6 4.8683 1.1566 -6.2742 22 1 5.3580 1.9905 -5.7934 23 6 5.0624 0.9248 -7.6304 24 7 4.4653 -0.0889 -8.2158 25 14 6.1709 2.0551 -8.6218 26 1 6.7191 3.1131 -7.7356 27 1 7.2886 1.2680 -9.2021 28 1 5.3870 2.6824 -9.7160 29 1 -0.3633 0.5017 0.8969 30 1 -0.3634 0.5259 -0.8828 31 1 -0.3634 -1.0276 -0.0140 32 1 3.1528 1.4167 -0.0140 33 1 1.6966 1.9579 -0.8829 34 1 1.7194 1.9495 0.8969 35 1 1.3224 -0.7871 2.0205 36 1 2.9946 -0.3250 1.5811 37 1 1.1552 -5.4124 2.9560 38 1 0.7924 -4.7011 5.4407 39 1 -0.6670 -4.1026 4.5939 40 1 1.7780 -2.5584 5.5125 41 1 0.0705 -2.0159 5.4000 42 1 0.2330 -1.5794 3.0914 43 1 1.9714 -1.3907 3.4708 44 1 3.9403 -1.6740 -0.5593 45 1 2.7606 -2.8407 -1.2329 46 1 3.8603 0.1463 -1.6452 47 1 3.3590 -1.3763 -3.4719 48 1 1.9636 -0.3374 -3.8491 49 1 3.6135 -0.4209 -5.9787 50 1 4.6011 -0.2510 -9.1625 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507432728.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:47 Heat of formation + Delta-G solvation = -62.696661 kcal Electronic energy + Delta-G solvation = -29366.680987 eV Core-core repulsion = 25393.341617 eV Total energy + Delta-G solvation = -3973.339371 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.69069 -40.27450 -39.60630 -38.53345 -36.22387 -35.56046 -34.37320 -33.25930 -31.09824 -30.07632 -29.09062 -28.25105 -27.57983 -27.21418 -25.76060 -23.87396 -22.13656 -21.70755 -21.16864 -20.00865 -19.80886 -19.45229 -17.98360 -17.54998 -17.15215 -17.09318 -16.83210 -16.40686 -16.26688 -15.85933 -15.50514 -15.19557 -15.06615 -14.90923 -14.48026 -14.29646 -14.05841 -13.81306 -13.58135 -13.53831 -13.38115 -13.17231 -13.03129 -12.92453 -12.84598 -12.69871 -12.67642 -12.47711 -12.40677 -12.11800 -12.04741 -12.04556 -11.75489 -11.56447 -11.51550 -11.30617 -11.01310 -10.34001 -10.11166 -10.02138 -9.71782 -9.32572 -8.47383 -5.96073 0.32307 1.36015 1.41212 1.55563 1.82913 2.04608 2.16330 2.28341 2.86643 3.19826 3.30995 3.43797 3.54433 3.63081 3.73920 3.85965 4.04765 4.08834 4.18972 4.22075 4.29495 4.30826 4.38837 4.43621 4.53743 4.56253 4.67597 4.68018 4.75735 4.80173 4.81632 4.88444 4.95009 4.98779 5.03662 5.14645 5.18242 5.20855 5.32540 5.35958 5.40564 5.40865 5.46698 5.51597 5.70237 5.87763 6.07387 6.32067 6.46781 6.58794 7.01469 7.11840 7.55547 8.10115 8.70278 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.026226 B = 0.002144 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.401955 B =13057.812082 C =13650.608486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.064 4.064 3 C -0.110 4.110 4 C 0.089 3.911 5 N -0.610 5.610 6 C 0.575 3.425 7 O -0.598 6.598 8 C -0.212 4.212 9 C -0.069 4.069 10 C -0.103 4.103 11 C -0.120 4.120 12 C -0.092 4.092 13 C 0.076 3.924 14 C 0.087 3.913 15 H 0.090 0.910 16 N -0.651 5.651 17 C 0.061 3.939 18 C 0.441 3.559 19 O -0.619 6.619 20 N -0.575 5.575 21 C -0.331 4.331 22 H 0.081 0.919 23 C -0.016 4.016 24 N -0.922 5.922 25 Si 0.994 3.006 26 H -0.272 1.272 27 H -0.272 1.272 28 H -0.271 1.271 29 H 0.081 0.919 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.045 0.955 33 H 0.049 0.951 34 H 0.068 0.932 35 H 0.125 0.875 36 H 0.081 0.919 37 H 0.124 0.876 38 H 0.093 0.907 39 H 0.102 0.898 40 H 0.076 0.924 41 H 0.099 0.901 42 H 0.096 0.904 43 H 0.084 0.916 44 H 0.070 0.930 45 H 0.065 0.935 46 H 0.347 0.653 47 H 0.060 0.940 48 H 0.104 0.896 49 H 0.395 0.605 50 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.494 -4.704 26.972 30.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.065 4.065 3 C -0.168 4.168 4 C -0.033 4.033 5 N -0.341 5.341 6 C 0.368 3.632 7 O -0.481 6.481 8 C -0.215 4.215 9 C -0.089 4.089 10 C -0.139 4.139 11 C -0.157 4.157 12 C -0.129 4.129 13 C -0.050 4.050 14 C -0.025 4.025 15 H 0.109 0.891 16 N -0.282 5.282 17 C -0.071 4.071 18 C 0.228 3.772 19 O -0.505 6.505 20 N -0.212 5.212 21 C -0.460 4.460 22 H 0.099 0.901 23 C -0.215 4.215 24 N -0.563 5.563 25 Si 0.818 3.182 26 H -0.196 1.196 27 H -0.198 1.198 28 H -0.196 1.196 29 H 0.100 0.900 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.143 0.857 36 H 0.100 0.900 37 H 0.142 0.858 38 H 0.111 0.889 39 H 0.120 0.880 40 H 0.095 0.905 41 H 0.118 0.882 42 H 0.114 0.886 43 H 0.102 0.898 44 H 0.088 0.912 45 H 0.083 0.917 46 H 0.167 0.833 47 H 0.078 0.922 48 H 0.122 0.878 49 H 0.229 0.771 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.456 -4.282 26.784 29.847 hybrid contribution 1.305 -1.119 -1.596 2.346 sum -11.150 -5.401 25.188 28.070 Atomic orbital electron populations 1.21809 0.92356 1.01541 1.03121 1.21518 0.96830 0.95927 0.92248 1.21444 1.00393 0.93463 1.01528 1.23421 1.02801 0.79096 0.97940 1.48748 1.61696 1.06494 1.17160 1.18272 0.77859 0.81484 0.85582 1.90768 1.55713 1.32537 1.69130 1.21855 1.05953 0.99399 0.94263 1.24431 0.90836 0.97753 0.95912 1.21552 1.01534 0.97718 0.93145 1.22506 1.02800 0.95030 0.95360 1.21608 1.02506 0.94347 0.94389 1.23248 0.97759 0.99768 0.84187 1.22749 0.95372 0.89744 0.94615 0.89143 1.60381 1.17255 1.50622 0.99987 1.21617 1.00033 0.95567 0.89932 1.20768 0.85741 0.87879 0.82764 1.90489 1.54257 1.34689 1.71045 1.41957 1.43113 1.28362 1.07790 1.19709 1.24568 1.09945 0.91819 0.90144 1.26073 0.99308 0.98691 0.97469 1.69688 1.44100 1.29719 1.12777 0.84854 0.77769 0.77852 0.77762 1.19629 1.19755 1.19618 0.90028 0.92640 0.93230 0.93568 0.93137 0.91303 0.85716 0.90039 0.85804 0.88852 0.88003 0.90543 0.88243 0.88595 0.89803 0.91210 0.91667 0.83311 0.92204 0.87785 0.77098 0.91361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 8.24 71.98 0.59 -1.40 16 2 C -0.06 -1.16 1.03 -51.27 -0.05 -1.21 16 3 C -0.11 -2.20 7.45 71.98 0.54 -1.67 16 4 C 0.09 1.42 4.95 86.53 0.43 1.85 16 5 N -0.61 -13.97 3.31 -811.43 -2.69 -16.66 16 6 C 0.57 15.30 7.88 86.57 0.68 15.98 16 7 O -0.60 -21.37 17.08 -4.06 -0.07 -21.44 16 8 C -0.21 -3.88 6.07 -18.58 -0.11 -3.99 16 9 C -0.07 -1.09 10.45 24.64 0.26 -0.83 16 10 C -0.10 -0.81 6.80 30.52 0.21 -0.60 16 11 C -0.12 -0.76 7.16 31.67 0.23 -0.54 16 12 C -0.09 -0.93 4.47 30.52 0.14 -0.80 16 13 C 0.08 1.92 6.72 86.67 0.58 2.50 16 14 C 0.09 2.04 3.03 45.96 0.14 2.18 16 15 H 0.09 2.15 7.39 -2.39 -0.02 2.13 16 16 N -0.65 -19.38 4.20 -490.15 -2.06 -21.44 16 17 C 0.06 2.07 6.02 85.56 0.52 2.59 16 18 C 0.44 20.83 7.82 87.66 0.69 21.51 16 19 O -0.62 -33.64 15.78 -3.04 -0.05 -33.69 16 20 N -0.57 -29.70 5.29 -306.98 -1.62 -31.33 16 21 C -0.33 -18.89 9.68 84.04 0.81 -18.07 16 22 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 23 C -0.02 -0.86 5.50 84.93 0.47 -0.39 16 24 N -0.92 -50.41 13.05 21.66 0.28 -50.13 16 25 Si 0.99 43.33 29.55 68.60 2.03 45.36 16 26 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 27 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 28 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 29 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.05 1.05 7.40 -2.39 -0.02 1.03 16 33 H 0.05 1.26 7.96 -2.39 -0.02 1.24 16 34 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.13 1.37 3.57 -2.39 -0.01 1.37 16 36 H 0.08 1.23 7.87 -2.39 -0.02 1.21 16 37 H 0.12 2.21 8.05 -2.91 -0.02 2.19 16 38 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 42 H 0.10 0.73 7.25 -2.39 -0.02 0.71 16 43 H 0.08 0.79 6.49 -2.39 -0.02 0.78 16 44 H 0.07 1.81 7.57 -2.39 -0.02 1.79 16 45 H 0.06 1.88 7.91 -2.39 -0.02 1.86 16 46 H 0.35 10.96 7.34 -89.69 -0.66 10.30 16 47 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 48 H 0.10 3.23 8.07 -2.39 -0.02 3.21 16 49 H 0.40 19.57 7.90 -92.71 -0.73 18.84 16 50 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 Total: -1.00 -74.16 396.35 1.50 -72.67 By element: Atomic # 1 Polarization: 39.99 SS G_CDS: -0.43 Total: 39.56 kcal Atomic # 6 Polarization: 10.99 SS G_CDS: 6.10 Total: 17.10 kcal Atomic # 7 Polarization: -113.47 SS G_CDS: -6.09 Total: -119.56 kcal Atomic # 8 Polarization: -55.00 SS G_CDS: -0.12 Total: -55.12 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -74.16 1.50 -72.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507432728.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.970 kcal (2) G-P(sol) polarization free energy of solvation -74.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds