Wall clock time and date at job start Tue Mar 31 2020 19:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.34254 * 126.52682 * 2 1 4 4 C 1.34055 * 108.22910 * 180.23012 * 3 2 1 5 5 C 1.50695 * 125.38028 * 179.80338 * 4 3 2 6 6 C 1.52995 * 109.47342 * 299.96102 * 5 4 3 7 7 C 1.53003 * 109.47140 * 59.95948 * 5 4 3 8 8 N 1.29932 * 109.24248 * 359.76741 * 4 3 2 9 9 C 1.36069 * 108.47735 * 0.02562 * 8 4 3 10 10 C 1.47420 * 126.45139 * 179.97438 * 9 8 4 11 11 O 1.21614 * 120.00196 * 180.02562 * 10 9 8 12 12 N 1.34782 * 119.99636 * 0.02562 * 10 9 8 13 13 C 1.46508 * 119.99558 * 180.02562 * 12 10 9 14 14 H 1.08993 * 110.05564 * 33.58409 * 13 12 10 15 15 C 1.54370 * 110.04371 * 272.10711 * 13 12 10 16 16 C 1.54889 * 104.19702 * 217.09157 * 15 13 12 17 17 C 1.54892 * 102.74596 * 37.97329 * 16 15 13 18 18 C 1.53874 * 110.02808 * 154.99981 * 13 12 10 19 19 H 1.08993 * 110.03170 * 238.61403 * 18 13 12 20 20 C 1.53002 * 110.03614 * 0.02562 * 18 13 12 21 21 N 1.46499 * 109.47337 * 184.30955 * 20 18 13 22 22 C 1.36935 * 119.99938 * 179.97438 * 21 20 18 23 23 H 1.07999 * 120.00083 * 359.97438 * 22 21 20 24 24 C 1.38812 * 119.99632 * 180.02562 * 22 21 20 25 25 N 1.31624 * 119.99535 * 180.02562 * 24 22 21 26 26 Si 1.86798 * 120.00484 * 359.97438 * 24 22 21 27 27 H 1.48493 * 109.47326 * 270.00576 * 26 24 22 28 28 H 1.48506 * 109.46545 * 30.00326 * 26 24 22 29 29 H 1.48498 * 109.47210 * 150.00037 * 26 24 22 30 30 H 1.08994 * 109.47301 * 270.16087 * 1 2 3 31 31 H 1.08997 * 109.47066 * 30.16579 * 1 2 3 32 32 H 1.08999 * 109.47006 * 150.15644 * 1 2 3 33 33 H 1.09000 * 109.47191 * 179.97438 * 5 4 3 34 34 H 1.09000 * 109.47141 * 59.99769 * 6 5 4 35 35 H 1.08995 * 109.47397 * 180.02562 * 6 5 4 36 36 H 1.09001 * 109.47131 * 299.99667 * 6 5 4 37 37 H 1.08996 * 109.47190 * 59.99667 * 7 5 4 38 38 H 1.08998 * 109.47394 * 180.02562 * 7 5 4 39 39 H 1.09000 * 109.47041 * 300.00045 * 7 5 4 40 40 H 0.96995 * 120.00318 * 359.97438 * 12 10 9 41 41 H 1.09004 * 110.45971 * 98.42702 * 15 13 12 42 42 H 1.09002 * 110.62692 * 335.84019 * 15 13 12 43 43 H 1.09000 * 110.75919 * 279.65737 * 16 15 13 44 44 H 1.09002 * 110.75695 * 156.28481 * 16 15 13 45 45 H 1.09006 * 110.48646 * 203.37826 * 17 16 15 46 46 H 1.08999 * 110.60180 * 80.79105 * 17 16 15 47 47 H 1.08993 * 109.47262 * 64.30272 * 20 18 13 48 48 H 1.09005 * 109.46767 * 304.30887 * 20 18 13 49 49 H 0.96999 * 119.99984 * 0.02562 * 21 20 18 50 50 H 0.97005 * 119.99717 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0788 0.0000 4 6 3.5788 0.6580 -0.0051 5 6 4.7930 1.5506 -0.0111 6 6 4.7718 2.4320 -1.2615 7 6 4.7815 2.4356 1.2369 8 7 3.6003 -0.6412 -0.0033 9 6 2.3170 -1.0936 0.0026 10 6 1.8853 -2.5032 0.0058 11 8 0.7002 -2.7762 0.0106 12 7 2.8041 -3.4893 0.0035 13 6 2.3750 -4.8902 0.0062 14 1 1.4481 -4.9983 -0.5569 15 6 2.1741 -5.3792 1.4565 16 6 2.6735 -6.8452 1.4358 17 6 3.8975 -6.7759 0.4891 18 6 3.4713 -5.7783 -0.6078 19 1 3.0766 -6.3168 -1.4693 20 6 4.6665 -4.9205 -1.0283 21 7 5.6579 -5.7617 -1.7034 22 6 6.8198 -5.2087 -2.1718 23 1 7.0051 -4.1525 -2.0439 24 6 7.7589 -6.0057 -2.8119 25 7 8.8759 -5.4743 -3.2617 26 14 7.4381 -7.8325 -3.0338 27 1 7.9719 -8.5745 -1.8635 28 1 5.9761 -8.0684 -3.1446 29 1 8.1112 -8.3068 -4.2696 30 1 -0.3633 0.0029 1.0276 31 1 -0.3633 0.8885 -0.5164 32 1 -0.3633 -0.8914 -0.5114 33 1 5.6944 0.9378 -0.0140 34 1 3.8704 3.0448 -1.2589 35 1 5.6502 3.0773 -1.2661 36 1 4.7800 1.8016 -2.1506 37 1 4.7965 1.8077 2.1277 38 1 5.6594 3.0816 1.2324 39 1 3.8801 3.0484 1.2395 40 1 3.7493 -3.2716 -0.0007 41 1 1.1195 -5.3393 1.7294 42 1 2.7691 -4.7833 2.1486 43 1 1.9089 -7.5081 1.0307 44 1 2.9745 -7.1650 2.4334 45 1 4.1007 -7.7553 0.0559 46 1 4.7737 -6.4060 1.0215 47 1 5.1161 -4.4662 -0.1455 48 1 4.3305 -4.1378 -1.7085 49 1 5.4910 -6.7101 -1.8192 50 1 9.5324 -6.0312 -3.7087 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568524168.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:06 Heat of formation + Delta-G solvation = -18.457340 kcal Electronic energy + Delta-G solvation = -29676.070616 eV Core-core repulsion = 25704.649606 eV Total energy + Delta-G solvation = -3971.421010 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.57830 -40.00427 -38.04296 -36.01583 -34.87226 -34.51565 -33.53067 -32.10978 -31.52833 -29.02406 -28.25989 -27.53034 -26.85675 -24.72334 -23.95292 -22.70666 -22.12985 -21.40879 -20.55611 -19.93008 -19.14755 -17.90392 -17.50024 -17.07076 -16.32369 -15.87956 -15.53475 -15.07976 -14.84058 -14.73451 -14.40244 -14.23231 -13.91139 -13.81840 -13.68286 -13.43344 -13.18158 -13.08845 -12.74160 -12.65775 -12.52795 -12.25887 -11.94151 -11.83120 -11.64953 -11.61085 -11.34346 -11.28420 -10.95831 -10.93937 -10.89458 -10.83396 -10.51731 -10.48497 -10.33164 -10.05927 -10.00091 -9.56965 -9.07170 -8.89008 -8.75022 -7.21953 -5.75153 -3.10506 0.98929 1.93821 2.31647 3.16677 3.31097 3.38303 3.40949 3.46055 3.67386 4.39957 4.52814 4.60552 4.61915 4.69731 4.72226 4.74853 4.94147 5.01915 5.06102 5.22602 5.26046 5.28029 5.32845 5.44938 5.48309 5.51136 5.54977 5.58708 5.61850 5.67471 5.72596 5.77200 5.79007 5.82710 5.87999 5.90129 5.93134 5.99683 6.00264 6.12580 6.22094 6.34325 6.47820 6.58069 6.67161 6.73605 7.34608 7.67858 8.01341 8.22813 8.43790 9.22898 9.95137 10.15180 11.43306 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009476 B = 0.003561 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2954.143326 B = 7860.183621 C =10142.071623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.034 3.966 3 O -0.195 6.195 4 C 0.202 3.798 5 C 0.001 3.999 6 C -0.150 4.150 7 C -0.149 4.149 8 N -0.452 5.452 9 C -0.074 4.074 10 C 0.603 3.397 11 O -0.544 6.544 12 N -0.702 5.702 13 C 0.149 3.851 14 H 0.092 0.908 15 C -0.132 4.132 16 C -0.123 4.123 17 C -0.116 4.116 18 C -0.112 4.112 19 H 0.082 0.918 20 C 0.161 3.839 21 N -0.752 5.752 22 C -0.243 4.243 23 H 0.090 0.910 24 C 0.005 3.995 25 N -0.934 5.934 26 Si 0.883 3.117 27 H -0.284 1.284 28 H -0.277 1.277 29 H -0.291 1.291 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.112 0.888 33 H 0.119 0.881 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.061 0.939 40 H 0.417 0.583 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.066 0.934 46 H 0.075 0.925 47 H 0.028 0.972 48 H 0.030 0.970 49 H 0.361 0.639 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.781 13.030 10.569 23.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.023 4.023 3 O -0.082 6.082 4 C -0.007 4.007 5 C -0.018 4.018 6 C -0.208 4.208 7 C -0.207 4.207 8 N -0.180 5.180 9 C -0.194 4.194 10 C 0.389 3.611 11 O -0.423 6.423 12 N -0.355 5.355 13 C 0.044 3.956 14 H 0.110 0.890 15 C -0.170 4.170 16 C -0.161 4.161 17 C -0.154 4.154 18 C -0.132 4.132 19 H 0.101 0.899 20 C 0.034 3.966 21 N -0.397 5.397 22 C -0.373 4.373 23 H 0.108 0.892 24 C -0.191 4.191 25 N -0.582 5.582 26 Si 0.714 3.286 27 H -0.211 1.211 28 H -0.204 1.204 29 H -0.218 1.218 30 H 0.108 0.892 31 H 0.097 0.903 32 H 0.130 0.870 33 H 0.137 0.863 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.257 0.743 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.093 0.907 47 H 0.045 0.955 48 H 0.048 0.952 49 H 0.194 0.806 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.874 12.627 10.503 22.841 hybrid contribution -0.097 -0.834 -0.318 0.898 sum -15.970 11.793 10.185 22.313 Atomic orbital electron populations 1.20561 0.82649 1.05302 1.04471 1.23699 0.95030 0.83413 1.00120 1.84286 1.18004 1.36167 1.69775 1.26208 0.83938 0.90105 1.00463 1.19822 0.89997 0.94370 0.97631 1.21899 1.03029 0.99554 0.96347 1.21893 1.03084 0.99476 0.96237 1.70822 1.21412 1.08977 1.16809 1.21517 0.88948 0.95602 1.13338 1.16723 0.85523 0.82675 0.76200 1.90741 1.16314 1.83380 1.51818 1.46222 1.10937 1.05532 1.72826 1.21699 0.98141 0.79224 0.96509 0.88993 1.22788 1.01388 0.96509 0.96350 1.22473 0.97887 0.95982 0.99764 1.22411 0.97892 0.99091 0.95964 1.22279 0.95724 0.96580 0.98594 0.89948 1.20661 0.87788 0.93009 0.95164 1.42663 1.19777 1.06978 1.70317 1.19070 0.92838 0.95513 1.29840 0.89190 1.24656 0.96420 0.97455 1.00563 1.69707 1.09294 1.34844 1.44394 0.86557 0.77420 0.87110 0.77528 1.21058 1.20355 1.21764 0.89211 0.90305 0.86957 0.86317 0.91984 0.90657 0.91630 0.91898 0.90686 0.91966 0.74311 0.91321 0.91180 0.91497 0.91497 0.91540 0.90652 0.95466 0.95233 0.80609 0.93108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.68 9.88 36.01 0.36 -0.33 16 2 C 0.03 0.43 7.44 -35.08 -0.26 0.17 16 3 O -0.20 -2.38 10.73 6.50 0.07 -2.31 16 4 C 0.20 2.54 6.81 -13.08 -0.09 2.45 16 5 C 0.00 0.01 3.39 -91.77 -0.31 -0.30 16 6 C -0.15 -1.18 9.17 37.16 0.34 -0.84 16 7 C -0.15 -1.06 9.18 37.16 0.34 -0.72 16 8 N -0.45 -6.82 11.06 -7.65 -0.08 -6.91 16 9 C -0.07 -1.11 6.99 -83.02 -0.58 -1.69 16 10 C 0.60 9.45 7.81 -12.52 -0.10 9.35 16 11 O -0.54 -8.93 14.46 5.27 0.08 -8.86 16 12 N -0.70 -10.71 4.40 -53.74 -0.24 -10.95 16 13 C 0.15 2.13 3.23 -66.75 -0.22 1.91 16 14 H 0.09 1.34 7.56 -51.93 -0.39 0.94 16 15 C -0.13 -1.64 6.53 -25.02 -0.16 -1.81 16 16 C -0.12 -1.43 6.91 -24.74 -0.17 -1.60 16 17 C -0.12 -1.65 6.05 -25.07 -0.15 -1.80 16 18 C -0.11 -1.75 2.97 -89.50 -0.27 -2.02 16 19 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 20 C 0.16 3.14 4.18 -4.04 -0.02 3.13 16 21 N -0.75 -17.94 5.24 -59.91 -0.31 -18.26 16 22 C -0.24 -6.93 10.47 -15.06 -0.16 -7.09 16 23 H 0.09 2.76 8.06 -52.49 -0.42 2.33 16 24 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 25 N -0.93 -29.51 13.97 55.49 0.78 -28.73 16 26 Si 0.88 22.23 27.74 -169.99 -4.71 17.52 16 27 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 28 H -0.28 -6.57 6.52 56.52 0.37 -6.21 16 29 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 30 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.11 1.18 6.48 -51.93 -0.34 0.84 16 33 H 0.12 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.42 6.68 5.61 -40.82 -0.23 6.45 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.07 0.90 8.06 -51.93 -0.42 0.48 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.07 1.16 7.77 -51.93 -0.40 0.76 16 47 H 0.03 0.54 7.08 -51.93 -0.37 0.17 16 48 H 0.03 0.61 7.46 -51.93 -0.39 0.23 16 49 H 0.36 8.40 5.39 -40.82 -0.22 8.18 16 50 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 LS Contribution 400.61 15.07 6.04 6.04 Total: -1.00 -33.69 400.61 -8.20 -41.89 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: -8.27 Total: 11.72 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -1.54 Total: -1.16 kcal Atomic # 7 Polarization: -64.98 SS G_CDS: 0.14 Total: -64.84 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.15 Total: -11.16 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.71 Total: 17.52 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.69 -8.20 -41.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568524168.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.434 kcal (2) G-P(sol) polarization free energy of solvation -33.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds