Wall clock time and date at job start Tue Mar 31 2020 19:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.34254 * 126.52682 * 2 1 4 4 C 1.34055 * 108.22910 * 180.23012 * 3 2 1 5 5 C 1.50695 * 125.38028 * 179.80338 * 4 3 2 6 6 C 1.52995 * 109.47342 * 299.96102 * 5 4 3 7 7 C 1.53003 * 109.47140 * 59.95948 * 5 4 3 8 8 N 1.29932 * 109.24248 * 359.76741 * 4 3 2 9 9 C 1.36069 * 108.47735 * 0.02562 * 8 4 3 10 10 C 1.47420 * 126.45139 * 179.97438 * 9 8 4 11 11 O 1.21614 * 120.00196 * 180.02562 * 10 9 8 12 12 N 1.34782 * 119.99636 * 0.02562 * 10 9 8 13 13 C 1.46508 * 119.99558 * 180.02562 * 12 10 9 14 14 H 1.08993 * 110.05564 * 33.58409 * 13 12 10 15 15 C 1.54370 * 110.04371 * 272.10711 * 13 12 10 16 16 C 1.54889 * 104.19702 * 217.09157 * 15 13 12 17 17 C 1.54892 * 102.74596 * 37.97329 * 16 15 13 18 18 C 1.53874 * 110.02808 * 154.99981 * 13 12 10 19 19 H 1.08993 * 110.03170 * 238.61403 * 18 13 12 20 20 C 1.53002 * 110.03614 * 0.02562 * 18 13 12 21 21 N 1.46499 * 109.47337 * 184.30955 * 20 18 13 22 22 C 1.36935 * 119.99938 * 179.97438 * 21 20 18 23 23 H 1.07999 * 120.00083 * 359.97438 * 22 21 20 24 24 C 1.38812 * 119.99632 * 180.02562 * 22 21 20 25 25 N 1.31624 * 119.99535 * 180.02562 * 24 22 21 26 26 Si 1.86798 * 120.00484 * 359.97438 * 24 22 21 27 27 H 1.48493 * 109.47326 * 270.00576 * 26 24 22 28 28 H 1.48506 * 109.46545 * 30.00326 * 26 24 22 29 29 H 1.48498 * 109.47210 * 150.00037 * 26 24 22 30 30 H 1.08994 * 109.47301 * 270.16087 * 1 2 3 31 31 H 1.08997 * 109.47066 * 30.16579 * 1 2 3 32 32 H 1.08999 * 109.47006 * 150.15644 * 1 2 3 33 33 H 1.09000 * 109.47191 * 179.97438 * 5 4 3 34 34 H 1.09000 * 109.47141 * 59.99769 * 6 5 4 35 35 H 1.08995 * 109.47397 * 180.02562 * 6 5 4 36 36 H 1.09001 * 109.47131 * 299.99667 * 6 5 4 37 37 H 1.08996 * 109.47190 * 59.99667 * 7 5 4 38 38 H 1.08998 * 109.47394 * 180.02562 * 7 5 4 39 39 H 1.09000 * 109.47041 * 300.00045 * 7 5 4 40 40 H 0.96995 * 120.00318 * 359.97438 * 12 10 9 41 41 H 1.09004 * 110.45971 * 98.42702 * 15 13 12 42 42 H 1.09002 * 110.62692 * 335.84019 * 15 13 12 43 43 H 1.09000 * 110.75919 * 279.65737 * 16 15 13 44 44 H 1.09002 * 110.75695 * 156.28481 * 16 15 13 45 45 H 1.09006 * 110.48646 * 203.37826 * 17 16 15 46 46 H 1.08999 * 110.60180 * 80.79105 * 17 16 15 47 47 H 1.08993 * 109.47262 * 64.30272 * 20 18 13 48 48 H 1.09005 * 109.46767 * 304.30887 * 20 18 13 49 49 H 0.96999 * 119.99984 * 0.02562 * 21 20 18 50 50 H 0.97005 * 119.99717 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0788 0.0000 4 6 3.5788 0.6580 -0.0051 5 6 4.7930 1.5506 -0.0111 6 6 4.7718 2.4320 -1.2615 7 6 4.7815 2.4356 1.2369 8 7 3.6003 -0.6412 -0.0033 9 6 2.3170 -1.0936 0.0026 10 6 1.8853 -2.5032 0.0058 11 8 0.7002 -2.7762 0.0106 12 7 2.8041 -3.4893 0.0035 13 6 2.3750 -4.8902 0.0062 14 1 1.4481 -4.9983 -0.5569 15 6 2.1741 -5.3792 1.4565 16 6 2.6735 -6.8452 1.4358 17 6 3.8975 -6.7759 0.4891 18 6 3.4713 -5.7783 -0.6078 19 1 3.0766 -6.3168 -1.4693 20 6 4.6665 -4.9205 -1.0283 21 7 5.6579 -5.7617 -1.7034 22 6 6.8198 -5.2087 -2.1718 23 1 7.0051 -4.1525 -2.0439 24 6 7.7589 -6.0057 -2.8119 25 7 8.8759 -5.4743 -3.2617 26 14 7.4381 -7.8325 -3.0338 27 1 7.9719 -8.5745 -1.8635 28 1 5.9761 -8.0684 -3.1446 29 1 8.1112 -8.3068 -4.2696 30 1 -0.3633 0.0029 1.0276 31 1 -0.3633 0.8885 -0.5164 32 1 -0.3633 -0.8914 -0.5114 33 1 5.6944 0.9378 -0.0140 34 1 3.8704 3.0448 -1.2589 35 1 5.6502 3.0773 -1.2661 36 1 4.7800 1.8016 -2.1506 37 1 4.7965 1.8077 2.1277 38 1 5.6594 3.0816 1.2324 39 1 3.8801 3.0484 1.2395 40 1 3.7493 -3.2716 -0.0007 41 1 1.1195 -5.3393 1.7294 42 1 2.7691 -4.7833 2.1486 43 1 1.9089 -7.5081 1.0307 44 1 2.9745 -7.1650 2.4334 45 1 4.1007 -7.7553 0.0559 46 1 4.7737 -6.4060 1.0215 47 1 5.1161 -4.4662 -0.1455 48 1 4.3305 -4.1378 -1.7085 49 1 5.4910 -6.7101 -1.8192 50 1 9.5324 -6.0312 -3.7087 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568524168.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:05 Heat of formation + Delta-G solvation = -42.100983 kcal Electronic energy + Delta-G solvation = -29677.095881 eV Core-core repulsion = 25704.649606 eV Total energy + Delta-G solvation = -3972.446275 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -44.58382 -41.21324 -39.28084 -36.78660 -36.40057 -35.90760 -34.67978 -33.59184 -32.98724 -30.61034 -29.32247 -28.13801 -27.82766 -26.40038 -24.99843 -24.00405 -23.59921 -22.44199 -21.61585 -20.99701 -20.62197 -19.52733 -18.94345 -18.07462 -17.33904 -17.08963 -16.67004 -16.40541 -16.11318 -15.95678 -15.66403 -15.54731 -15.20519 -15.07388 -14.74117 -14.58040 -14.43147 -14.32547 -13.79273 -13.65036 -13.52518 -13.50226 -13.07794 -12.95480 -12.84669 -12.63342 -12.51894 -12.37540 -12.17721 -12.10216 -12.01831 -11.97620 -11.90183 -11.84446 -11.74742 -11.59489 -11.48781 -11.21610 -10.99617 -10.20794 -9.81539 -9.32974 -8.03753 -5.38134 -0.03617 0.87755 1.36785 1.36929 1.40922 1.48074 2.03149 2.15186 2.47543 2.73048 3.27141 3.29894 3.50122 3.62197 3.64960 3.74643 3.88340 3.96786 4.02109 4.13699 4.22353 4.32554 4.38264 4.44239 4.44827 4.48786 4.55244 4.57142 4.73120 4.73576 4.77060 4.84967 4.86076 4.86727 4.93716 4.94343 5.03731 5.06436 5.09465 5.19404 5.20441 5.26494 5.27649 5.29474 5.47091 5.47412 5.73668 6.19414 6.24139 6.51958 7.00923 7.06066 7.80198 8.01759 9.17779 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009476 B = 0.003561 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2954.143326 B = 7860.183621 C =10142.071623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.045 3.955 3 O -0.190 6.190 4 C 0.205 3.795 5 C -0.002 4.002 6 C -0.146 4.146 7 C -0.142 4.142 8 N -0.488 5.488 9 C -0.110 4.110 10 C 0.601 3.399 11 O -0.555 6.555 12 N -0.706 5.706 13 C 0.151 3.849 14 H 0.092 0.908 15 C -0.125 4.125 16 C -0.110 4.110 17 C -0.117 4.117 18 C -0.104 4.104 19 H 0.086 0.914 20 C 0.165 3.835 21 N -0.751 5.751 22 C -0.238 4.238 23 H 0.053 0.947 24 C -0.061 4.061 25 N -0.983 5.983 26 Si 0.956 3.044 27 H -0.274 1.274 28 H -0.251 1.251 29 H -0.295 1.295 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.111 0.889 34 H 0.069 0.931 35 H 0.097 0.903 36 H 0.047 0.953 37 H 0.054 0.946 38 H 0.097 0.903 39 H 0.067 0.933 40 H 0.411 0.589 41 H 0.078 0.922 42 H 0.063 0.937 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.071 0.929 46 H 0.059 0.941 47 H 0.024 0.976 48 H 0.015 0.985 49 H 0.368 0.632 50 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.758 12.487 11.597 24.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.012 4.012 3 O -0.077 6.077 4 C -0.005 4.005 5 C -0.022 4.022 6 C -0.204 4.204 7 C -0.200 4.200 8 N -0.217 5.217 9 C -0.229 4.229 10 C 0.388 3.612 11 O -0.435 6.435 12 N -0.358 5.358 13 C 0.046 3.954 14 H 0.110 0.890 15 C -0.164 4.164 16 C -0.148 4.148 17 C -0.154 4.154 18 C -0.124 4.124 19 H 0.105 0.895 20 C 0.038 3.962 21 N -0.397 5.397 22 C -0.369 4.369 23 H 0.071 0.929 24 C -0.253 4.253 25 N -0.633 5.633 26 Si 0.783 3.217 27 H -0.200 1.200 28 H -0.176 1.176 29 H -0.222 1.222 30 H 0.126 0.874 31 H 0.124 0.876 32 H 0.119 0.881 33 H 0.129 0.871 34 H 0.088 0.912 35 H 0.116 0.884 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.115 0.885 39 H 0.086 0.914 40 H 0.249 0.751 41 H 0.097 0.903 42 H 0.082 0.918 43 H 0.103 0.897 44 H 0.101 0.899 45 H 0.090 0.910 46 H 0.078 0.922 47 H 0.042 0.958 48 H 0.032 0.968 49 H 0.201 0.799 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -17.903 12.078 11.559 24.495 hybrid contribution 0.535 -0.497 -0.638 0.969 sum -17.368 11.581 10.922 23.559 Atomic orbital electron populations 1.20702 0.80196 1.06019 1.05771 1.24294 0.96275 0.82818 0.97849 1.84313 1.17878 1.35862 1.69672 1.26909 0.84800 0.89921 0.98891 1.20061 0.88217 0.94381 0.99497 1.21891 1.04513 0.99269 0.94691 1.21873 1.04469 0.99155 0.94511 1.70784 1.22034 1.10435 1.18477 1.21585 0.89550 0.95877 1.15907 1.16856 0.85397 0.83110 0.75870 1.90715 1.16490 1.83707 1.52597 1.46272 1.10550 1.06073 1.72875 1.21767 0.97344 0.78489 0.97806 0.88987 1.22741 1.01952 0.97066 0.94641 1.22434 0.96835 0.95469 1.00024 1.22404 0.98614 0.98560 0.95869 1.22211 0.94159 0.96543 0.99463 0.89537 1.20710 0.88402 0.92947 0.94105 1.42609 1.19120 1.07626 1.70353 1.19014 0.94475 0.94098 1.29303 0.92939 1.25513 0.96137 1.02917 1.00699 1.69896 1.10641 1.36923 1.45848 0.85396 0.78703 0.80324 0.77315 1.20001 1.17583 1.22207 0.87429 0.87596 0.88087 0.87093 0.91226 0.88403 0.93417 0.92711 0.88454 0.91352 0.75075 0.90328 0.91775 0.89716 0.89867 0.90983 0.92189 0.95836 0.96753 0.79854 0.93277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.21 9.88 71.24 0.70 -0.51 16 2 C 0.04 1.12 7.44 25.19 0.19 1.30 16 3 O -0.19 -4.53 10.73 0.36 0.00 -4.52 16 4 C 0.20 5.21 6.81 88.39 0.60 5.81 16 5 C 0.00 -0.04 3.39 -11.54 -0.04 -0.08 16 6 C -0.15 -2.18 9.17 71.98 0.66 -1.52 16 7 C -0.14 -1.86 9.18 71.98 0.66 -1.19 16 8 N -0.49 -15.41 11.06 -293.03 -3.24 -18.65 16 9 C -0.11 -3.38 6.99 40.41 0.28 -3.10 16 10 C 0.60 19.17 7.81 86.66 0.68 19.84 16 11 O -0.56 -18.16 14.46 -4.08 -0.06 -18.21 16 12 N -0.71 -22.00 4.40 -442.17 -1.95 -23.95 16 13 C 0.15 4.18 3.23 45.75 0.15 4.32 16 14 H 0.09 2.58 7.56 -2.39 -0.02 2.56 16 15 C -0.13 -2.91 6.53 31.70 0.21 -2.70 16 16 C -0.11 -2.23 6.91 31.89 0.22 -2.01 16 17 C -0.12 -3.10 6.05 31.67 0.19 -2.91 16 18 C -0.10 -3.16 2.97 -10.07 -0.03 -3.19 16 19 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 20 C 0.16 6.54 4.18 86.38 0.36 6.90 16 21 N -0.75 -35.89 5.24 -343.45 -1.80 -37.69 16 22 C -0.24 -13.96 10.47 84.03 0.88 -13.08 16 23 H 0.05 3.40 8.06 -2.91 -0.02 3.38 16 24 C -0.06 -3.66 5.50 84.86 0.47 -3.19 16 25 N -0.98 -63.76 13.97 21.65 0.30 -63.46 16 26 Si 0.96 45.71 27.74 68.60 1.90 47.61 16 27 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 28 H -0.25 -10.82 6.52 99.48 0.65 -10.17 16 29 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 30 H 0.11 1.49 8.14 -2.39 -0.02 1.48 16 31 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.10 2.03 6.48 -2.39 -0.02 2.01 16 33 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.41 13.83 5.61 -92.71 -0.52 13.31 16 41 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.06 1.57 8.06 -2.39 -0.02 1.55 16 43 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 46 H 0.06 1.78 7.77 -2.39 -0.02 1.77 16 47 H 0.02 0.97 7.08 -2.39 -0.02 0.95 16 48 H 0.01 0.62 7.46 -2.38 -0.02 0.61 16 49 H 0.37 16.53 5.39 -92.71 -0.50 16.03 16 50 H 0.26 15.91 8.31 -92.70 -0.77 15.14 16 Total: -1.00 -74.77 400.61 1.21 -73.55 By element: Atomic # 1 Polarization: 40.75 SS G_CDS: -0.13 Total: 40.62 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: 6.18 Total: 4.70 kcal Atomic # 7 Polarization: -137.06 SS G_CDS: -6.68 Total: -143.75 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.06 Total: -22.74 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 1.90 Total: 47.61 kcal Total: -74.77 1.21 -73.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568524168.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.452 kcal (2) G-P(sol) polarization free energy of solvation -74.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds