Wall clock time and date at job start Tue Mar 31 2020 19:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.34254 * 126.52486 * 2 1 4 4 C 1.34053 * 108.22807 * 180.02562 * 3 2 1 5 5 C 1.50701 * 125.37833 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.46913 * 300.02085 * 5 4 3 7 7 C 1.52999 * 109.47398 * 60.02066 * 5 4 3 8 8 N 1.29934 * 109.24077 * 359.97438 * 4 3 2 9 9 C 1.36066 * 108.47955 * 0.02562 * 8 4 3 10 10 C 1.47419 * 126.45075 * 179.97438 * 9 8 4 11 11 O 1.21607 * 119.99853 * 180.02562 * 10 9 8 12 12 N 1.34781 * 119.99507 * 0.03984 * 10 9 8 13 13 C 1.47018 * 125.65323 * 0.02562 * 12 10 9 14 14 C 1.54320 * 107.27182 * 181.02415 * 13 12 10 15 15 H 1.09003 * 110.71807 * 263.65148 * 14 13 12 16 16 C 1.52997 * 110.71939 * 140.56027 * 14 13 12 17 17 C 1.55148 * 102.94388 * 22.19586 * 14 13 12 18 18 H 1.09004 * 111.00753 * 82.60526 * 17 14 13 19 19 C 1.53004 * 111.00632 * 206.42499 * 17 14 13 20 20 N 1.46500 * 109.47040 * 185.00293 * 19 17 14 21 21 C 1.36939 * 119.99799 * 179.97438 * 20 19 17 22 22 H 1.08006 * 120.00117 * 0.02562 * 21 20 19 23 23 C 1.38808 * 120.00002 * 179.97438 * 21 20 19 24 24 N 1.31622 * 120.00110 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00148 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47217 * 59.99712 * 25 23 21 27 27 H 1.48498 * 109.47273 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.46810 * 299.99799 * 25 23 21 29 29 C 1.47426 * 125.64300 * 179.72193 * 12 10 9 30 30 H 1.09003 * 109.47358 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.47073 * 119.97719 * 1 2 3 32 32 H 1.08998 * 109.47415 * 239.97686 * 1 2 3 33 33 H 1.08994 * 109.46824 * 180.02562 * 5 4 3 34 34 H 1.08998 * 109.47260 * 299.99901 * 6 5 4 35 35 H 1.09004 * 109.47350 * 60.00388 * 6 5 4 36 36 H 1.08999 * 109.46987 * 179.97438 * 6 5 4 37 37 H 1.09004 * 109.47216 * 60.00002 * 7 5 4 38 38 H 1.08999 * 109.47587 * 180.02562 * 7 5 4 39 39 H 1.09005 * 109.46942 * 300.00302 * 7 5 4 40 40 H 1.09002 * 109.88622 * 300.44593 * 13 12 10 41 41 H 1.09006 * 109.88080 * 61.60704 * 13 12 10 42 42 H 1.09006 * 109.47390 * 61.45407 * 16 14 13 43 43 H 1.09000 * 109.47741 * 181.45350 * 16 14 13 44 44 H 1.09006 * 109.47070 * 301.45265 * 16 14 13 45 45 H 1.09000 * 109.46748 * 304.99875 * 19 17 14 46 46 H 1.08991 * 109.47218 * 64.99773 * 19 17 14 47 47 H 0.96999 * 120.00262 * 359.97438 * 20 19 17 48 48 H 0.96997 * 119.99947 * 179.97438 * 24 23 21 49 49 H 1.09001 * 110.36120 * 274.74205 * 29 12 10 50 50 H 1.09002 * 110.36973 * 37.06608 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3060 1.0789 0.0000 4 6 3.5788 0.6580 -0.0006 5 6 4.7930 1.5507 -0.0013 6 6 4.7757 2.4341 -1.2504 7 6 4.7776 2.4338 1.2480 8 7 3.6002 -0.6411 -0.0004 9 6 2.3170 -1.0936 -0.0002 10 6 1.8853 -2.5032 -0.0005 11 8 0.7003 -2.7762 -0.0008 12 7 2.8041 -3.4893 -0.0002 13 6 4.2623 -3.3018 0.0010 14 6 4.9046 -4.7048 -0.0253 15 1 5.1691 -5.0268 0.9819 16 6 6.1334 -4.7205 -0.9366 17 6 3.7754 -5.5930 -0.6110 18 1 3.7584 -5.5362 -1.6994 19 6 3.9190 -7.0425 -0.1425 20 7 2.9113 -7.8726 -0.8071 21 6 2.8471 -9.2147 -0.5427 22 1 3.5392 -9.6611 0.1560 23 6 1.8920 -10.0011 -1.1720 24 7 1.0476 -9.4568 -2.0224 25 14 1.8040 -11.8318 -0.8109 26 1 1.5425 -12.0389 0.6362 27 1 0.7067 -12.4408 -1.6048 28 1 3.0932 -12.4711 -1.1774 29 6 2.5133 -4.9346 0.0054 30 1 -0.3634 1.0277 0.0005 31 1 -0.3633 -0.5135 -0.8902 32 1 -0.3634 -0.5142 0.8897 33 1 5.6943 0.9380 -0.0021 34 1 4.7867 1.8050 -2.1405 35 1 3.8742 3.0469 -1.2497 36 1 5.6536 3.0800 -1.2508 37 1 4.7899 1.8045 2.1380 38 1 5.6555 3.0798 1.2473 39 1 3.8760 3.0465 1.2488 40 1 4.5645 -2.7391 -0.8822 41 1 4.5671 -2.7715 0.9033 42 1 6.8785 -4.0227 -0.5542 43 1 6.5553 -5.7252 -0.9607 44 1 5.8421 -4.4246 -1.9445 45 1 4.9145 -7.4086 -0.3938 46 1 3.7757 -7.0913 0.9368 47 1 2.2895 -7.4716 -1.4344 48 1 0.3804 -10.0064 -2.4624 49 1 2.3587 -5.2864 1.0254 50 1 1.6371 -5.1476 -0.6071 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569838000.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:13 Heat of formation + Delta-G solvation = -15.678947 kcal Electronic energy + Delta-G solvation = -29413.392584 eV Core-core repulsion = 25442.092054 eV Total energy + Delta-G solvation = -3971.300530 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.67046 -39.88828 -37.82087 -36.17734 -35.01355 -34.52975 -32.78711 -32.16403 -31.32248 -29.24363 -27.71315 -27.57586 -26.23453 -25.53140 -23.93545 -23.04025 -22.51479 -21.22449 -20.85785 -19.87656 -19.12482 -17.52876 -17.18760 -16.91830 -16.35818 -16.04479 -15.37336 -15.22808 -14.73589 -14.60056 -14.24485 -13.98749 -13.80299 -13.67401 -13.55152 -13.16858 -13.09437 -12.89112 -12.79176 -12.73702 -12.69923 -12.25625 -12.16605 -12.03787 -11.88841 -11.81637 -11.54071 -11.38938 -11.26370 -11.05506 -10.85853 -10.80424 -10.48987 -10.38291 -10.27314 -10.00552 -9.96101 -9.61245 -9.01286 -8.83165 -8.40676 -6.88247 -5.71585 -3.00764 0.93671 1.86216 2.22352 3.00945 3.30453 3.47463 3.51450 3.52855 3.53441 4.28080 4.38095 4.51210 4.53392 4.61703 4.68903 4.76506 4.92470 4.95682 5.02875 5.10064 5.12671 5.27963 5.30660 5.33222 5.41677 5.46918 5.58957 5.59220 5.64158 5.65504 5.67955 5.69210 5.73737 5.82758 5.84814 5.89175 6.02105 6.09697 6.14250 6.20662 6.28576 6.37975 6.44984 6.54558 6.76276 6.89486 7.30113 7.63404 7.73290 8.20363 8.46771 9.57789 10.15333 10.49842 11.51102 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019513 B = 0.002445 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.610801 B =11448.255779 C =12506.591698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.037 3.963 3 O -0.195 6.195 4 C 0.193 3.807 5 C 0.004 3.996 6 C -0.150 4.150 7 C -0.150 4.150 8 N -0.451 5.451 9 C -0.068 4.068 10 C 0.610 3.390 11 O -0.535 6.535 12 N -0.601 5.601 13 C 0.120 3.880 14 C -0.102 4.102 15 H 0.085 0.915 16 C -0.137 4.137 17 C -0.100 4.100 18 H 0.086 0.914 19 C 0.166 3.834 20 N -0.733 5.733 21 C -0.240 4.240 22 H 0.070 0.930 23 C -0.014 4.014 24 N -0.933 5.933 25 Si 0.907 3.093 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 C 0.116 3.884 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.115 0.885 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.054 0.946 43 H 0.063 0.937 44 H 0.055 0.945 45 H 0.025 0.975 46 H 0.021 0.979 47 H 0.384 0.616 48 H 0.256 0.744 49 H 0.073 0.927 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.965 28.121 4.529 29.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.020 4.020 3 O -0.082 6.082 4 C -0.016 4.016 5 C -0.015 4.015 6 C -0.208 4.208 7 C -0.208 4.208 8 N -0.180 5.180 9 C -0.188 4.188 10 C 0.398 3.602 11 O -0.412 6.412 12 N -0.333 5.333 13 C -0.003 4.003 14 C -0.122 4.122 15 H 0.103 0.897 16 C -0.195 4.195 17 C -0.120 4.120 18 H 0.104 0.896 19 C 0.038 3.962 20 N -0.377 5.377 21 C -0.371 4.371 22 H 0.088 0.912 23 C -0.210 4.210 24 N -0.581 5.581 25 Si 0.738 3.262 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 C -0.005 4.005 30 H 0.096 0.904 31 H 0.119 0.881 32 H 0.118 0.882 33 H 0.133 0.867 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.073 0.927 43 H 0.082 0.918 44 H 0.075 0.925 45 H 0.042 0.958 46 H 0.039 0.961 47 H 0.218 0.782 48 H 0.065 0.935 49 H 0.091 0.909 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.840 27.496 4.593 29.245 hybrid contribution -0.801 -0.550 -0.028 0.972 sum 8.039 26.946 4.565 28.487 Atomic orbital electron populations 1.20454 0.82450 1.03659 1.05742 1.23718 0.95095 0.83275 0.99884 1.84284 1.17956 1.36162 1.69769 1.26202 0.84034 0.90252 1.01088 1.19760 0.89864 0.94260 0.97618 1.21901 1.03152 0.99533 0.96246 1.21900 1.03154 0.99526 0.96224 1.70880 1.21599 1.08554 1.16945 1.21467 0.88787 0.95454 1.13091 1.16298 0.84695 0.81941 0.77296 1.90826 1.15748 1.83013 1.51645 1.48267 1.07065 1.06763 1.71212 1.22120 0.78929 0.96802 1.02400 1.22283 0.95403 0.93947 1.00520 0.89705 1.21715 0.96523 1.02210 0.99042 1.22705 0.92782 0.95751 1.00719 0.89582 1.20580 0.93292 0.86933 0.95384 1.42367 1.37726 1.05556 1.52048 1.19165 1.12988 0.84448 1.20538 0.91240 1.24749 0.98493 0.98108 0.99627 1.69654 1.21650 1.34898 1.31894 0.86267 0.77016 0.85376 0.77506 1.21283 1.21723 1.21311 1.22444 0.99251 0.77111 1.01699 0.90435 0.88142 0.88209 0.86716 0.91823 0.91847 0.90760 0.91867 0.90762 0.91851 0.90884 0.91316 0.92710 0.91778 0.92549 0.95755 0.96105 0.78225 0.93457 0.90926 0.89709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.65 9.13 36.01 0.33 -0.32 16 2 C 0.04 0.45 7.44 -35.08 -0.26 0.19 16 3 O -0.19 -2.16 10.73 6.51 0.07 -2.09 16 4 C 0.19 2.03 6.81 -13.08 -0.09 1.94 16 5 C 0.00 0.03 3.39 -91.77 -0.31 -0.28 16 6 C -0.15 -0.79 9.17 37.16 0.34 -0.45 16 7 C -0.15 -0.77 9.18 37.16 0.34 -0.43 16 8 N -0.45 -5.83 8.84 -7.65 -0.07 -5.89 16 9 C -0.07 -0.99 6.83 -83.02 -0.57 -1.55 16 10 C 0.61 10.35 7.85 -12.52 -0.10 10.25 16 11 O -0.53 -10.24 15.86 5.27 0.08 -10.16 16 12 N -0.60 -9.76 3.32 -171.64 -0.57 -10.33 16 13 C 0.12 1.62 5.12 -3.07 -0.02 1.61 16 14 C -0.10 -1.34 3.01 -88.79 -0.27 -1.61 16 15 H 0.08 1.07 8.04 -51.93 -0.42 0.65 16 16 C -0.14 -1.56 9.13 37.16 0.34 -1.22 16 17 C -0.10 -1.67 2.51 -88.35 -0.22 -1.89 16 18 H 0.09 1.51 8.04 -51.93 -0.42 1.10 16 19 C 0.17 3.32 5.72 -4.04 -0.02 3.30 16 20 N -0.73 -18.76 5.55 -59.91 -0.33 -19.10 16 21 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 22 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 23 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 24 N -0.93 -28.79 13.06 55.49 0.72 -28.06 16 25 Si 0.91 22.77 29.55 -169.99 -5.02 17.75 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 29 C 0.12 2.05 6.33 -2.41 -0.02 2.04 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.10 1.02 8.08 -51.93 -0.42 0.60 16 32 H 0.10 0.99 8.07 -51.93 -0.42 0.57 16 33 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.07 0.98 7.31 -51.93 -0.38 0.60 16 41 H 0.07 0.89 7.75 -51.93 -0.40 0.49 16 42 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 45 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.02 0.42 7.96 -51.93 -0.41 0.01 16 47 H 0.38 10.43 7.67 -40.82 -0.31 10.12 16 48 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 49 H 0.07 1.31 7.91 -51.93 -0.41 0.90 16 50 H 0.08 1.70 8.03 -51.93 -0.42 1.28 16 LS Contribution 408.03 15.07 6.15 6.15 Total: -1.00 -33.92 408.03 -8.36 -42.28 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -8.63 Total: 5.33 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: -0.77 Total: 4.12 kcal Atomic # 7 Polarization: -63.13 SS G_CDS: -0.25 Total: -63.38 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: 0.15 Total: -12.25 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.92 -8.36 -42.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569838000.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.600 kcal (2) G-P(sol) polarization free energy of solvation -33.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds