Wall clock time and date at job start Tue Mar 31 2020 19:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.34254 * 126.52486 * 2 1 4 4 C 1.34053 * 108.22807 * 180.02562 * 3 2 1 5 5 C 1.50701 * 125.37833 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.46913 * 300.02085 * 5 4 3 7 7 C 1.52999 * 109.47398 * 60.02066 * 5 4 3 8 8 N 1.29934 * 109.24077 * 359.97438 * 4 3 2 9 9 C 1.36066 * 108.47955 * 0.02562 * 8 4 3 10 10 C 1.47419 * 126.45075 * 179.97438 * 9 8 4 11 11 O 1.21607 * 119.99853 * 180.02562 * 10 9 8 12 12 N 1.34781 * 119.99507 * 0.03984 * 10 9 8 13 13 C 1.47018 * 125.65323 * 0.02562 * 12 10 9 14 14 C 1.54320 * 107.27182 * 181.02415 * 13 12 10 15 15 H 1.09003 * 110.71807 * 263.65148 * 14 13 12 16 16 C 1.52997 * 110.71939 * 140.56027 * 14 13 12 17 17 C 1.55148 * 102.94388 * 22.19586 * 14 13 12 18 18 H 1.09004 * 111.00753 * 82.60526 * 17 14 13 19 19 C 1.53004 * 111.00632 * 206.42499 * 17 14 13 20 20 N 1.46500 * 109.47040 * 185.00293 * 19 17 14 21 21 C 1.36939 * 119.99799 * 179.97438 * 20 19 17 22 22 H 1.08006 * 120.00117 * 0.02562 * 21 20 19 23 23 C 1.38808 * 120.00002 * 179.97438 * 21 20 19 24 24 N 1.31622 * 120.00110 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00148 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47217 * 59.99712 * 25 23 21 27 27 H 1.48498 * 109.47273 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.46810 * 299.99799 * 25 23 21 29 29 C 1.47426 * 125.64300 * 179.72193 * 12 10 9 30 30 H 1.09003 * 109.47358 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.47073 * 119.97719 * 1 2 3 32 32 H 1.08998 * 109.47415 * 239.97686 * 1 2 3 33 33 H 1.08994 * 109.46824 * 180.02562 * 5 4 3 34 34 H 1.08998 * 109.47260 * 299.99901 * 6 5 4 35 35 H 1.09004 * 109.47350 * 60.00388 * 6 5 4 36 36 H 1.08999 * 109.46987 * 179.97438 * 6 5 4 37 37 H 1.09004 * 109.47216 * 60.00002 * 7 5 4 38 38 H 1.08999 * 109.47587 * 180.02562 * 7 5 4 39 39 H 1.09005 * 109.46942 * 300.00302 * 7 5 4 40 40 H 1.09002 * 109.88622 * 300.44593 * 13 12 10 41 41 H 1.09006 * 109.88080 * 61.60704 * 13 12 10 42 42 H 1.09006 * 109.47390 * 61.45407 * 16 14 13 43 43 H 1.09000 * 109.47741 * 181.45350 * 16 14 13 44 44 H 1.09006 * 109.47070 * 301.45265 * 16 14 13 45 45 H 1.09000 * 109.46748 * 304.99875 * 19 17 14 46 46 H 1.08991 * 109.47218 * 64.99773 * 19 17 14 47 47 H 0.96999 * 120.00262 * 359.97438 * 20 19 17 48 48 H 0.96997 * 119.99947 * 179.97438 * 24 23 21 49 49 H 1.09001 * 110.36120 * 274.74205 * 29 12 10 50 50 H 1.09002 * 110.36973 * 37.06608 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3060 1.0789 0.0000 4 6 3.5788 0.6580 -0.0006 5 6 4.7930 1.5507 -0.0013 6 6 4.7757 2.4341 -1.2504 7 6 4.7776 2.4338 1.2480 8 7 3.6002 -0.6411 -0.0004 9 6 2.3170 -1.0936 -0.0002 10 6 1.8853 -2.5032 -0.0005 11 8 0.7003 -2.7762 -0.0008 12 7 2.8041 -3.4893 -0.0002 13 6 4.2623 -3.3018 0.0010 14 6 4.9046 -4.7048 -0.0253 15 1 5.1691 -5.0268 0.9819 16 6 6.1334 -4.7205 -0.9366 17 6 3.7754 -5.5930 -0.6110 18 1 3.7584 -5.5362 -1.6994 19 6 3.9190 -7.0425 -0.1425 20 7 2.9113 -7.8726 -0.8071 21 6 2.8471 -9.2147 -0.5427 22 1 3.5392 -9.6611 0.1560 23 6 1.8920 -10.0011 -1.1720 24 7 1.0476 -9.4568 -2.0224 25 14 1.8040 -11.8318 -0.8109 26 1 1.5425 -12.0389 0.6362 27 1 0.7067 -12.4408 -1.6048 28 1 3.0932 -12.4711 -1.1774 29 6 2.5133 -4.9346 0.0054 30 1 -0.3634 1.0277 0.0005 31 1 -0.3633 -0.5135 -0.8902 32 1 -0.3634 -0.5142 0.8897 33 1 5.6943 0.9380 -0.0021 34 1 4.7867 1.8050 -2.1405 35 1 3.8742 3.0469 -1.2497 36 1 5.6536 3.0800 -1.2508 37 1 4.7899 1.8045 2.1380 38 1 5.6555 3.0798 1.2473 39 1 3.8760 3.0465 1.2488 40 1 4.5645 -2.7391 -0.8822 41 1 4.5671 -2.7715 0.9033 42 1 6.8785 -4.0227 -0.5542 43 1 6.5553 -5.7252 -0.9607 44 1 5.8421 -4.4246 -1.9445 45 1 4.9145 -7.4086 -0.3938 46 1 3.7757 -7.0913 0.9368 47 1 2.2895 -7.4716 -1.4344 48 1 0.3804 -10.0064 -2.4624 49 1 2.3587 -5.2864 1.0254 50 1 1.6371 -5.1476 -0.6071 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569838000.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:12 Heat of formation + Delta-G solvation = -38.295831 kcal Electronic energy + Delta-G solvation = -29414.373325 eV Core-core repulsion = 25442.092054 eV Total energy + Delta-G solvation = -3972.281271 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -44.58890 -41.19389 -39.16370 -36.76535 -36.48209 -35.86976 -34.21321 -33.10219 -32.97762 -30.84942 -28.66780 -28.09433 -27.28883 -27.08778 -25.31846 -24.40944 -23.46860 -22.49343 -21.87711 -21.22455 -20.19161 -19.17192 -18.48687 -18.10216 -17.45123 -17.15280 -16.60938 -16.42277 -16.15427 -15.71381 -15.41690 -15.20583 -15.15135 -14.92389 -14.59165 -14.41034 -14.27144 -14.07586 -13.80809 -13.59135 -13.51936 -13.38168 -13.30779 -13.04339 -12.94424 -12.72936 -12.59781 -12.50963 -12.47148 -12.20279 -12.13963 -11.97468 -11.96491 -11.90761 -11.78411 -11.61940 -11.34635 -11.25824 -10.92432 -10.05003 -9.65214 -9.00172 -7.94109 -5.23719 -0.06472 0.89530 1.35421 1.46912 1.50716 1.56706 1.79323 2.09012 2.56262 2.68812 3.28697 3.39542 3.48953 3.53311 3.64722 3.77379 3.90938 4.06399 4.11676 4.15215 4.21508 4.23799 4.38027 4.39170 4.50029 4.50218 4.52521 4.69448 4.76474 4.76922 4.79528 4.81522 4.86281 4.87506 4.91493 4.95743 5.01908 5.04388 5.08994 5.16530 5.18064 5.23500 5.31514 5.32553 5.34402 5.48134 5.51376 6.27075 6.28882 6.43598 6.90372 7.33187 8.08688 8.31317 9.29436 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019513 B = 0.002445 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.610801 B =11448.255779 C =12506.591698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.044 3.956 3 O -0.190 6.190 4 C 0.204 3.796 5 C 0.004 3.996 6 C -0.147 4.147 7 C -0.146 4.146 8 N -0.470 5.470 9 C -0.099 4.099 10 C 0.603 3.397 11 O -0.569 6.569 12 N -0.604 5.604 13 C 0.127 3.873 14 C -0.089 4.089 15 H 0.097 0.903 16 C -0.133 4.133 17 C -0.090 4.090 18 H 0.075 0.925 19 C 0.168 3.832 20 N -0.747 5.747 21 C -0.244 4.244 22 H 0.079 0.921 23 C -0.079 4.079 24 N -0.972 5.972 25 Si 0.976 3.024 26 H -0.278 1.278 27 H -0.297 1.297 28 H -0.275 1.275 29 C 0.121 3.879 30 H 0.109 0.891 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.125 0.875 34 H 0.052 0.948 35 H 0.060 0.940 36 H 0.099 0.901 37 H 0.054 0.946 38 H 0.099 0.901 39 H 0.060 0.940 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.062 0.938 44 H 0.052 0.948 45 H 0.036 0.964 46 H 0.025 0.975 47 H 0.372 0.628 48 H 0.250 0.750 49 H 0.066 0.934 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.444 29.926 5.434 32.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.013 4.013 3 O -0.078 6.078 4 C -0.006 4.006 5 C -0.016 4.016 6 C -0.205 4.205 7 C -0.204 4.204 8 N -0.198 5.198 9 C -0.217 4.217 10 C 0.392 3.608 11 O -0.449 6.449 12 N -0.335 5.335 13 C 0.006 3.994 14 C -0.109 4.109 15 H 0.116 0.884 16 C -0.190 4.190 17 C -0.109 4.109 18 H 0.093 0.907 19 C 0.041 3.959 20 N -0.390 5.390 21 C -0.376 4.376 22 H 0.097 0.903 23 C -0.271 4.271 24 N -0.623 5.623 25 Si 0.805 3.195 26 H -0.204 1.204 27 H -0.224 1.224 28 H -0.201 1.201 29 C -0.001 4.001 30 H 0.127 0.873 31 H 0.112 0.888 32 H 0.114 0.886 33 H 0.143 0.857 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.118 0.882 37 H 0.073 0.927 38 H 0.117 0.883 39 H 0.079 0.921 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.100 0.900 43 H 0.081 0.919 44 H 0.071 0.929 45 H 0.054 0.946 46 H 0.043 0.957 47 H 0.203 0.797 48 H 0.059 0.941 49 H 0.084 0.916 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 11.389 29.312 5.528 31.929 hybrid contribution -1.521 -0.987 -0.277 1.834 sum 9.869 28.325 5.251 30.451 Atomic orbital electron populations 1.20533 0.80994 1.05551 1.05127 1.24076 0.96019 0.83013 0.98189 1.84325 1.18230 1.35548 1.69678 1.27163 0.84695 0.90142 0.98558 1.20086 0.88216 0.94238 0.99016 1.21902 1.04279 0.99343 0.94953 1.21899 1.04268 0.99329 0.94910 1.70824 1.20785 1.09761 1.18444 1.21207 0.90230 0.94450 1.15834 1.16723 0.84379 0.83112 0.76576 1.90789 1.17116 1.83803 1.53234 1.48349 1.08346 1.05870 1.70971 1.22199 0.77089 0.97060 1.03081 1.22285 0.94785 0.92427 1.01370 0.88438 1.21700 0.95982 1.02917 0.98449 1.22519 0.94004 0.94401 0.99999 0.90695 1.20716 0.92159 0.88013 0.95011 1.42611 1.38669 1.05482 1.52202 1.19623 1.12480 0.85725 1.19754 0.90277 1.25626 0.98659 1.02734 1.00092 1.69833 1.22622 1.36332 1.33496 0.85176 0.77028 0.79936 0.77405 1.20382 1.22371 1.20065 1.22220 0.98617 0.78667 1.00608 0.87253 0.88836 0.88626 0.85667 0.92834 0.92096 0.88228 0.92696 0.88250 0.92103 0.90485 0.90229 0.89991 0.91928 0.92924 0.94606 0.95712 0.79692 0.94085 0.91582 0.93104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.26 9.13 71.24 0.65 -0.61 16 2 C 0.04 1.07 7.44 25.19 0.19 1.26 16 3 O -0.19 -3.97 10.73 0.38 0.00 -3.97 16 4 C 0.20 3.97 6.81 88.39 0.60 4.58 16 5 C 0.00 0.04 3.39 -11.54 -0.04 0.00 16 6 C -0.15 -1.15 9.17 71.98 0.66 -0.49 16 7 C -0.15 -1.09 9.18 71.98 0.66 -0.43 16 8 N -0.47 -11.71 8.84 -293.03 -2.59 -14.30 16 9 C -0.10 -2.87 6.83 40.41 0.28 -2.60 16 10 C 0.60 21.24 7.85 86.66 0.68 21.92 16 11 O -0.57 -23.07 15.86 -4.05 -0.06 -23.13 16 12 N -0.60 -20.10 3.32 -815.21 -2.71 -22.81 16 13 C 0.13 3.31 5.12 86.73 0.44 3.75 16 14 C -0.09 -2.21 3.01 -9.61 -0.03 -2.24 16 15 H 0.10 2.22 8.04 -2.39 -0.02 2.20 16 16 C -0.13 -2.69 9.13 71.98 0.66 -2.04 16 17 C -0.09 -3.01 2.51 -9.32 -0.02 -3.03 16 18 H 0.07 2.70 8.04 -2.38 -0.02 2.68 16 19 C 0.17 6.68 5.72 86.38 0.49 7.17 16 20 N -0.75 -39.03 5.55 -343.45 -1.91 -40.94 16 21 C -0.24 -13.91 9.99 84.03 0.84 -13.07 16 22 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 23 C -0.08 -4.67 5.50 84.86 0.47 -4.21 16 24 N -0.97 -61.66 13.06 21.65 0.28 -61.38 16 25 Si 0.98 47.19 29.55 68.60 2.03 49.22 16 26 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 27 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 28 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 29 C 0.12 4.48 6.33 86.93 0.55 5.03 16 30 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.09 1.95 8.08 -2.39 -0.02 1.93 16 32 H 0.10 1.93 8.07 -2.39 -0.02 1.91 16 33 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 36 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 37 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 38 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 39 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 40 H 0.08 1.97 7.31 -2.39 -0.02 1.95 16 41 H 0.08 1.93 7.75 -2.38 -0.02 1.92 16 42 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 43 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.05 1.12 8.13 -2.38 -0.02 1.10 16 45 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.02 0.99 7.96 -2.39 -0.02 0.97 16 47 H 0.37 21.03 7.67 -92.71 -0.71 20.32 16 48 H 0.25 15.44 8.31 -92.71 -0.77 14.66 16 49 H 0.07 2.49 7.91 -2.39 -0.02 2.47 16 50 H 0.05 2.20 8.03 -2.39 -0.02 2.18 16 Total: -1.00 -75.28 408.03 2.33 -72.95 By element: Atomic # 1 Polarization: 29.15 SS G_CDS: 0.21 Total: 29.36 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: 7.08 Total: 15.00 kcal Atomic # 7 Polarization: -132.51 SS G_CDS: -6.92 Total: -139.43 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -0.06 Total: -27.10 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.22 kcal Total: -75.28 2.33 -72.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569838000.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.652 kcal (2) G-P(sol) polarization free energy of solvation -75.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds