Wall clock time and date at job start Tue Mar 31 2020 19:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.34256 * 126.52419 * 2 1 4 4 C 1.34049 * 108.23060 * 180.02562 * 3 2 1 5 5 C 1.50698 * 125.37774 * 180.02562 * 4 3 2 6 6 C 1.52989 * 109.47349 * 299.97484 * 5 4 3 7 7 C 1.52994 * 109.47211 * 59.97982 * 5 4 3 8 8 N 1.29936 * 109.24112 * 359.74454 * 4 3 2 9 9 C 1.36073 * 108.47690 * 0.41094 * 8 4 3 10 10 C 1.47418 * 126.44989 * 179.86166 * 9 8 4 11 11 O 1.21606 * 119.99971 * 179.68735 * 10 9 8 12 12 N 1.34784 * 119.99873 * 359.68082 * 10 9 8 13 13 C 1.47425 * 125.64653 * 0.04485 * 12 10 9 14 14 C 1.54907 * 104.83095 * 204.09108 * 13 12 10 15 15 H 1.09002 * 111.00536 * 204.92020 * 14 13 12 16 16 C 1.52997 * 111.00532 * 81.06543 * 14 13 12 17 17 C 1.55161 * 101.57934 * 322.99197 * 14 13 12 18 18 H 1.08998 * 110.87473 * 277.06526 * 17 14 13 19 19 C 1.53004 * 110.72010 * 153.86469 * 17 14 13 20 20 N 1.46499 * 109.47198 * 180.02562 * 19 17 14 21 21 C 1.36939 * 119.99933 * 180.27608 * 20 19 17 22 22 H 1.08001 * 119.99700 * 359.72658 * 21 20 19 23 23 C 1.38810 * 120.00095 * 179.71972 * 21 20 19 24 24 N 1.31624 * 119.99740 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00044 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47173 * 60.00435 * 25 23 21 27 27 H 1.48497 * 109.47172 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.47132 * 300.00314 * 25 23 21 29 29 C 1.47013 * 125.64771 * 180.02562 * 12 10 9 30 30 H 1.09000 * 109.47097 * 269.95399 * 1 2 3 31 31 H 1.08996 * 109.47118 * 29.95681 * 1 2 3 32 32 H 1.09008 * 109.46766 * 149.95610 * 1 2 3 33 33 H 1.09008 * 109.46646 * 179.97438 * 5 4 3 34 34 H 1.09001 * 109.47810 * 180.02562 * 6 5 4 35 35 H 1.09005 * 109.47246 * 300.00381 * 6 5 4 36 36 H 1.09004 * 109.47705 * 60.00159 * 6 5 4 37 37 H 1.09005 * 109.47762 * 59.99555 * 7 5 4 38 38 H 1.09003 * 109.47401 * 179.97438 * 7 5 4 39 39 H 1.09000 * 109.47125 * 299.99415 * 7 5 4 40 40 H 1.08998 * 110.37003 * 322.93108 * 13 12 10 41 41 H 1.09005 * 110.36704 * 85.14486 * 13 12 10 42 42 H 1.09004 * 109.47045 * 307.80694 * 16 14 13 43 43 H 1.08997 * 109.47327 * 67.80513 * 16 14 13 44 44 H 1.08998 * 109.47181 * 187.81040 * 16 14 13 45 45 H 1.09009 * 109.46730 * 60.02126 * 19 17 14 46 46 H 1.08998 * 109.46846 * 300.02670 * 19 17 14 47 47 H 0.97001 * 119.99790 * 359.97438 * 20 19 17 48 48 H 0.96998 * 119.99409 * 179.97438 * 24 23 21 49 49 H 1.09002 * 109.88176 * 59.55950 * 29 12 10 50 50 H 1.09006 * 109.88369 * 298.39641 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3060 1.0789 0.0000 4 6 3.5788 0.6581 -0.0006 5 6 4.7928 1.5509 -0.0002 6 6 4.7765 2.4345 -1.2491 7 6 4.7765 2.4335 1.2493 8 7 3.6003 -0.6410 0.0045 9 6 2.3170 -1.0936 -0.0007 10 6 1.8854 -2.5032 -0.0004 11 8 0.7004 -2.7762 0.0003 12 7 2.8042 -3.4893 -0.0011 13 6 4.2664 -3.3012 -0.0012 14 6 4.8340 -4.6061 -0.6134 15 1 5.8569 -4.7814 -0.2799 16 6 4.7552 -4.5749 -2.1410 17 6 3.8683 -5.6703 -0.0283 18 1 4.1710 -5.9578 0.9786 19 6 3.7970 -6.8965 -0.9408 20 7 2.8790 -7.8817 -0.3639 21 6 2.6584 -9.0706 -1.0067 22 1 3.1578 -9.2800 -1.9411 23 6 1.7930 -10.0066 -0.4572 24 7 1.1842 -9.7511 0.6814 25 14 1.4916 -11.6280 -1.3344 26 1 2.7748 -12.3628 -1.4713 27 1 0.5339 -12.4459 -0.5476 28 1 0.9261 -11.3641 -2.6820 29 6 2.5143 -4.9306 -0.0016 30 1 -0.3633 -0.0008 1.0277 31 1 -0.3633 0.8903 -0.5131 32 1 -0.3633 -0.8897 -0.5146 33 1 5.6944 0.9381 -0.0004 34 1 5.6549 3.0799 -1.2491 35 1 4.7882 1.8056 -2.1393 36 1 3.8750 3.0472 -1.2490 37 1 4.7881 1.8041 2.1392 38 1 5.6548 3.0790 1.2498 39 1 3.8750 3.0463 1.2495 40 1 4.5386 -2.4438 -0.6167 41 1 4.6318 -3.1676 1.0170 42 1 3.7382 -4.3299 -2.4474 43 1 5.4420 -3.8205 -2.5249 44 1 5.0292 -5.5519 -2.5390 45 1 4.7896 -7.3367 -1.0360 46 1 3.4366 -6.5965 -1.9248 47 1 2.4308 -7.6937 0.4756 48 1 0.5792 -10.4051 1.0652 49 1 1.9317 -5.1912 -0.8852 50 1 1.9636 -5.1982 0.9003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569838001.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:17 Heat of formation + Delta-G solvation = -10.837725 kcal Electronic energy + Delta-G solvation = -29613.634844 eV Core-core repulsion = 25642.544245 eV Total energy + Delta-G solvation = -3971.090599 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.67671 -39.98302 -37.91753 -36.18250 -35.03293 -34.52364 -32.66141 -32.14335 -31.07592 -29.11768 -27.71724 -27.59141 -26.54514 -25.49908 -24.01721 -23.06079 -22.53409 -21.53012 -21.03812 -19.14823 -19.03772 -17.58397 -17.18876 -16.82004 -16.41251 -16.02842 -15.45273 -15.33316 -14.82128 -14.67179 -14.36246 -13.86685 -13.77059 -13.67257 -13.48083 -13.16808 -13.10263 -12.96191 -12.76174 -12.70450 -12.55061 -12.22104 -12.19159 -11.98466 -11.81745 -11.72526 -11.54760 -11.48383 -11.38714 -11.03838 -10.87657 -10.77313 -10.38586 -10.33305 -10.23376 -9.94416 -9.91413 -9.61870 -9.01457 -8.82341 -8.37809 -6.87506 -5.71402 -3.00308 0.93595 1.85181 2.22279 3.02011 3.31048 3.47700 3.51729 3.53028 3.53243 4.27900 4.38576 4.50743 4.53676 4.61606 4.71151 4.74457 4.93352 5.00017 5.09731 5.10079 5.12520 5.26387 5.27643 5.32525 5.40733 5.43781 5.58033 5.61819 5.65857 5.67234 5.68649 5.68785 5.74706 5.83930 5.87881 6.01867 6.04800 6.09630 6.14757 6.26698 6.35545 6.43826 6.53081 6.54068 6.74985 6.90711 7.29208 7.64766 7.73657 8.21696 8.47192 9.58141 10.15810 10.50254 11.51374 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020901 B = 0.002458 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.350127 B =11387.183261 C =12219.659480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.037 3.963 3 O -0.195 6.195 4 C 0.194 3.806 5 C 0.004 3.996 6 C -0.150 4.150 7 C -0.150 4.150 8 N -0.452 5.452 9 C -0.066 4.066 10 C 0.610 3.390 11 O -0.536 6.536 12 N -0.597 5.597 13 C 0.108 3.892 14 C -0.101 4.101 15 H 0.089 0.911 16 C -0.141 4.141 17 C -0.101 4.101 18 H 0.085 0.915 19 C 0.164 3.836 20 N -0.733 5.733 21 C -0.240 4.240 22 H 0.069 0.931 23 C -0.014 4.014 24 N -0.933 5.933 25 Si 0.907 3.093 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 C 0.119 3.881 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.096 0.904 41 H 0.065 0.935 42 H 0.054 0.946 43 H 0.050 0.950 44 H 0.066 0.934 45 H 0.023 0.977 46 H 0.026 0.974 47 H 0.384 0.616 48 H 0.255 0.745 49 H 0.077 0.923 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.683 28.711 -1.097 30.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.019 4.019 3 O -0.082 6.082 4 C -0.015 4.015 5 C -0.015 4.015 6 C -0.208 4.208 7 C -0.208 4.208 8 N -0.181 5.181 9 C -0.186 4.186 10 C 0.397 3.603 11 O -0.414 6.414 12 N -0.329 5.329 13 C -0.015 4.015 14 C -0.120 4.120 15 H 0.107 0.893 16 C -0.198 4.198 17 C -0.121 4.121 18 H 0.103 0.897 19 C 0.036 3.964 20 N -0.378 5.378 21 C -0.371 4.371 22 H 0.087 0.913 23 C -0.210 4.210 24 N -0.581 5.581 25 Si 0.738 3.262 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 C -0.003 4.003 30 H 0.110 0.890 31 H 0.097 0.903 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.114 0.886 41 H 0.083 0.917 42 H 0.073 0.927 43 H 0.069 0.931 44 H 0.085 0.915 45 H 0.041 0.959 46 H 0.044 0.956 47 H 0.217 0.783 48 H 0.065 0.935 49 H 0.096 0.904 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 8.526 28.103 -1.205 29.393 hybrid contribution -0.856 -0.546 -0.042 1.017 sum 7.670 27.557 -1.247 28.632 Atomic orbital electron populations 1.20601 0.82503 1.05392 1.04711 1.23722 0.95081 0.83228 0.99906 1.84279 1.17934 1.36219 1.69770 1.26226 0.84053 0.90288 1.00907 1.19764 0.89865 0.94272 0.97630 1.21900 1.03156 0.99540 0.96232 1.21900 1.03153 0.99542 0.96228 1.70861 1.21551 1.08500 1.17202 1.21458 0.88748 0.95443 1.12968 1.16296 0.84683 0.81919 0.77381 1.90803 1.15817 1.82918 1.51821 1.48257 1.07128 1.06579 1.70920 1.22580 0.79052 0.98696 1.01163 1.22378 0.99319 0.94019 0.96293 0.89254 1.21758 1.01768 1.02015 0.94265 1.22493 0.93370 0.95244 1.00953 0.89708 1.20716 0.93890 0.87448 0.94349 1.42380 1.51971 1.16360 1.27048 1.19163 1.21281 0.93045 1.03589 0.91266 1.24744 0.99983 0.98799 0.97460 1.69654 1.33202 1.35829 1.19441 0.86268 0.77505 0.83744 0.78659 1.21315 1.21722 1.21295 1.22069 0.97834 0.77243 1.03130 0.89026 0.90261 0.86793 0.86702 0.90757 0.91836 0.91842 0.91848 0.90756 0.91844 0.88609 0.91715 0.92658 0.93064 0.91471 0.95927 0.95621 0.78279 0.93473 0.90449 0.91082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 9.88 36.00 0.36 -0.39 16 2 C 0.04 0.45 7.44 -35.08 -0.26 0.19 16 3 O -0.19 -2.16 10.73 6.52 0.07 -2.09 16 4 C 0.19 2.02 6.81 -13.08 -0.09 1.93 16 5 C 0.00 0.03 3.39 -91.78 -0.31 -0.29 16 6 C -0.15 -0.77 9.17 37.15 0.34 -0.43 16 7 C -0.15 -0.77 9.17 37.15 0.34 -0.43 16 8 N -0.45 -5.77 8.44 -7.65 -0.06 -5.83 16 9 C -0.07 -0.96 6.81 -83.02 -0.57 -1.52 16 10 C 0.61 10.33 7.85 -12.52 -0.10 10.23 16 11 O -0.54 -10.29 15.13 5.27 0.08 -10.21 16 12 N -0.60 -9.66 3.31 -171.79 -0.57 -10.23 16 13 C 0.11 1.44 5.60 -2.53 -0.01 1.43 16 14 C -0.10 -1.32 3.54 -88.47 -0.31 -1.63 16 15 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 16 C -0.14 -1.82 8.13 37.16 0.30 -1.52 16 17 C -0.10 -1.67 2.88 -88.78 -0.26 -1.93 16 18 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 19 C 0.16 3.28 4.52 -4.04 -0.02 3.26 16 20 N -0.73 -18.77 5.45 -59.90 -0.33 -19.10 16 21 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 22 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 23 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 24 N -0.93 -28.78 13.06 55.49 0.72 -28.06 16 25 Si 0.91 22.83 29.55 -169.99 -5.02 17.80 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 28 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 29 C 0.12 2.13 5.83 -3.07 -0.02 2.11 16 30 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.11 1.31 6.48 -51.92 -0.34 0.98 16 33 H 0.11 0.65 8.14 -51.92 -0.42 0.23 16 34 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.10 1.24 6.07 -51.93 -0.32 0.93 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.05 0.80 7.91 -51.93 -0.41 0.39 16 43 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.07 0.89 6.76 -51.93 -0.35 0.54 16 45 H 0.02 0.46 8.14 -51.92 -0.42 0.03 16 46 H 0.03 0.53 6.67 -51.93 -0.35 0.18 16 47 H 0.38 10.37 7.52 -40.82 -0.31 10.07 16 48 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 49 H 0.08 1.55 7.76 -51.93 -0.40 1.15 16 50 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 400.95 15.07 6.04 6.04 Total: -1.00 -33.89 400.95 -8.28 -42.17 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -8.36 Total: 5.94 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -0.85 Total: 3.56 kcal Atomic # 7 Polarization: -62.99 SS G_CDS: -0.24 Total: -63.22 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: 0.15 Total: -12.30 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.89 -8.28 -42.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569838001.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.331 kcal (2) G-P(sol) polarization free energy of solvation -33.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds