Wall clock time and date at job start Tue Mar 31 2020 19:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.34256 * 126.52419 * 2 1 4 4 C 1.34049 * 108.23060 * 180.02562 * 3 2 1 5 5 C 1.50698 * 125.37774 * 180.02562 * 4 3 2 6 6 C 1.52989 * 109.47349 * 299.97484 * 5 4 3 7 7 C 1.52994 * 109.47211 * 59.97982 * 5 4 3 8 8 N 1.29936 * 109.24112 * 359.74454 * 4 3 2 9 9 C 1.36073 * 108.47690 * 0.41094 * 8 4 3 10 10 C 1.47418 * 126.44989 * 179.86166 * 9 8 4 11 11 O 1.21606 * 119.99971 * 179.68735 * 10 9 8 12 12 N 1.34784 * 119.99873 * 359.68082 * 10 9 8 13 13 C 1.47425 * 125.64653 * 0.04485 * 12 10 9 14 14 C 1.54907 * 104.83095 * 204.09108 * 13 12 10 15 15 H 1.09002 * 111.00536 * 204.92020 * 14 13 12 16 16 C 1.52997 * 111.00532 * 81.06543 * 14 13 12 17 17 C 1.55161 * 101.57934 * 322.99197 * 14 13 12 18 18 H 1.08998 * 110.87473 * 277.06526 * 17 14 13 19 19 C 1.53004 * 110.72010 * 153.86469 * 17 14 13 20 20 N 1.46499 * 109.47198 * 180.02562 * 19 17 14 21 21 C 1.36939 * 119.99933 * 180.27608 * 20 19 17 22 22 H 1.08001 * 119.99700 * 359.72658 * 21 20 19 23 23 C 1.38810 * 120.00095 * 179.71972 * 21 20 19 24 24 N 1.31624 * 119.99740 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00044 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47173 * 60.00435 * 25 23 21 27 27 H 1.48497 * 109.47172 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.47132 * 300.00314 * 25 23 21 29 29 C 1.47013 * 125.64771 * 180.02562 * 12 10 9 30 30 H 1.09000 * 109.47097 * 269.95399 * 1 2 3 31 31 H 1.08996 * 109.47118 * 29.95681 * 1 2 3 32 32 H 1.09008 * 109.46766 * 149.95610 * 1 2 3 33 33 H 1.09008 * 109.46646 * 179.97438 * 5 4 3 34 34 H 1.09001 * 109.47810 * 180.02562 * 6 5 4 35 35 H 1.09005 * 109.47246 * 300.00381 * 6 5 4 36 36 H 1.09004 * 109.47705 * 60.00159 * 6 5 4 37 37 H 1.09005 * 109.47762 * 59.99555 * 7 5 4 38 38 H 1.09003 * 109.47401 * 179.97438 * 7 5 4 39 39 H 1.09000 * 109.47125 * 299.99415 * 7 5 4 40 40 H 1.08998 * 110.37003 * 322.93108 * 13 12 10 41 41 H 1.09005 * 110.36704 * 85.14486 * 13 12 10 42 42 H 1.09004 * 109.47045 * 307.80694 * 16 14 13 43 43 H 1.08997 * 109.47327 * 67.80513 * 16 14 13 44 44 H 1.08998 * 109.47181 * 187.81040 * 16 14 13 45 45 H 1.09009 * 109.46730 * 60.02126 * 19 17 14 46 46 H 1.08998 * 109.46846 * 300.02670 * 19 17 14 47 47 H 0.97001 * 119.99790 * 359.97438 * 20 19 17 48 48 H 0.96998 * 119.99409 * 179.97438 * 24 23 21 49 49 H 1.09002 * 109.88176 * 59.55950 * 29 12 10 50 50 H 1.09006 * 109.88369 * 298.39641 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3060 1.0789 0.0000 4 6 3.5788 0.6581 -0.0006 5 6 4.7928 1.5509 -0.0002 6 6 4.7765 2.4345 -1.2491 7 6 4.7765 2.4335 1.2493 8 7 3.6003 -0.6410 0.0045 9 6 2.3170 -1.0936 -0.0007 10 6 1.8854 -2.5032 -0.0004 11 8 0.7004 -2.7762 0.0003 12 7 2.8042 -3.4893 -0.0011 13 6 4.2664 -3.3012 -0.0012 14 6 4.8340 -4.6061 -0.6134 15 1 5.8569 -4.7814 -0.2799 16 6 4.7552 -4.5749 -2.1410 17 6 3.8683 -5.6703 -0.0283 18 1 4.1710 -5.9578 0.9786 19 6 3.7970 -6.8965 -0.9408 20 7 2.8790 -7.8817 -0.3639 21 6 2.6584 -9.0706 -1.0067 22 1 3.1578 -9.2800 -1.9411 23 6 1.7930 -10.0066 -0.4572 24 7 1.1842 -9.7511 0.6814 25 14 1.4916 -11.6280 -1.3344 26 1 2.7748 -12.3628 -1.4713 27 1 0.5339 -12.4459 -0.5476 28 1 0.9261 -11.3641 -2.6820 29 6 2.5143 -4.9306 -0.0016 30 1 -0.3633 -0.0008 1.0277 31 1 -0.3633 0.8903 -0.5131 32 1 -0.3633 -0.8897 -0.5146 33 1 5.6944 0.9381 -0.0004 34 1 5.6549 3.0799 -1.2491 35 1 4.7882 1.8056 -2.1393 36 1 3.8750 3.0472 -1.2490 37 1 4.7881 1.8041 2.1392 38 1 5.6548 3.0790 1.2498 39 1 3.8750 3.0463 1.2495 40 1 4.5386 -2.4438 -0.6167 41 1 4.6318 -3.1676 1.0170 42 1 3.7382 -4.3299 -2.4474 43 1 5.4420 -3.8205 -2.5249 44 1 5.0292 -5.5519 -2.5390 45 1 4.7896 -7.3367 -1.0360 46 1 3.4366 -6.5965 -1.9248 47 1 2.4308 -7.6937 0.4756 48 1 0.5792 -10.4051 1.0652 49 1 1.9317 -5.1912 -0.8852 50 1 1.9636 -5.1982 0.9003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569838001.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:15 Heat of formation + Delta-G solvation = -33.579576 kcal Electronic energy + Delta-G solvation = -29614.621005 eV Core-core repulsion = 25642.544245 eV Total energy + Delta-G solvation = -3972.076759 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -44.59034 -41.28869 -39.26549 -36.76596 -36.47563 -35.86989 -34.18720 -33.01941 -32.80197 -30.68310 -28.70230 -28.08912 -27.64264 -27.05307 -25.38977 -24.43666 -23.49495 -22.88790 -21.95183 -20.52129 -20.14192 -19.16073 -18.45508 -18.11054 -17.34807 -17.25990 -16.71034 -16.57035 -16.16672 -15.79976 -15.35453 -15.31521 -15.20329 -14.71642 -14.58413 -14.34183 -14.29954 -13.99604 -13.81377 -13.75053 -13.62290 -13.30996 -13.09887 -13.03932 -12.98487 -12.79724 -12.65812 -12.57674 -12.48641 -12.23185 -12.13402 -11.99385 -11.96833 -11.88501 -11.66807 -11.52737 -11.35016 -11.18459 -10.91453 -10.04069 -9.63994 -8.99577 -7.94490 -5.23673 -0.05883 0.89258 1.35513 1.46278 1.50086 1.56024 1.80793 2.09666 2.55958 2.68953 3.30331 3.39338 3.48459 3.52488 3.67485 3.79800 3.91450 4.06932 4.12791 4.15234 4.22357 4.22885 4.32998 4.37955 4.49618 4.50655 4.59677 4.68453 4.76417 4.77505 4.77670 4.83603 4.86369 4.91974 4.93746 4.95207 5.01380 5.04941 5.08867 5.16204 5.19972 5.27130 5.29221 5.32172 5.33751 5.47829 5.49551 6.27202 6.29127 6.44942 6.91678 7.33220 8.09136 8.31671 9.29058 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020901 B = 0.002458 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.350127 B =11387.183261 C =12219.659480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.044 3.956 3 O -0.191 6.191 4 C 0.205 3.795 5 C 0.004 3.996 6 C -0.147 4.147 7 C -0.147 4.147 8 N -0.469 5.469 9 C -0.096 4.096 10 C 0.602 3.398 11 O -0.571 6.571 12 N -0.599 5.599 13 C 0.113 3.887 14 C -0.087 4.087 15 H 0.122 0.878 16 C -0.138 4.138 17 C -0.092 4.092 18 H 0.086 0.914 19 C 0.166 3.834 20 N -0.747 5.747 21 C -0.244 4.244 22 H 0.078 0.922 23 C -0.079 4.079 24 N -0.971 5.971 25 Si 0.975 3.025 26 H -0.274 1.274 27 H -0.296 1.296 28 H -0.279 1.279 29 C 0.127 3.873 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.093 0.907 33 H 0.126 0.874 34 H 0.099 0.901 35 H 0.054 0.946 36 H 0.060 0.940 37 H 0.053 0.947 38 H 0.099 0.901 39 H 0.060 0.940 40 H 0.106 0.894 41 H 0.075 0.925 42 H 0.031 0.969 43 H 0.078 0.922 44 H 0.064 0.936 45 H 0.035 0.965 46 H 0.024 0.976 47 H 0.372 0.628 48 H 0.251 0.749 49 H 0.047 0.953 50 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.157 30.827 -1.877 32.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.013 4.013 3 O -0.078 6.078 4 C -0.004 4.004 5 C -0.016 4.016 6 C -0.205 4.205 7 C -0.205 4.205 8 N -0.198 5.198 9 C -0.215 4.215 10 C 0.391 3.609 11 O -0.452 6.452 12 N -0.330 5.330 13 C -0.009 4.009 14 C -0.107 4.107 15 H 0.140 0.860 16 C -0.195 4.195 17 C -0.111 4.111 18 H 0.105 0.895 19 C 0.040 3.960 20 N -0.390 5.390 21 C -0.376 4.376 22 H 0.096 0.904 23 C -0.271 4.271 24 N -0.622 5.622 25 Si 0.804 3.196 26 H -0.200 1.200 27 H -0.223 1.223 28 H -0.206 1.206 29 C 0.004 3.996 30 H 0.121 0.879 31 H 0.127 0.873 32 H 0.111 0.889 33 H 0.144 0.856 34 H 0.117 0.883 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.118 0.882 39 H 0.079 0.921 40 H 0.124 0.876 41 H 0.093 0.907 42 H 0.050 0.950 43 H 0.097 0.903 44 H 0.083 0.917 45 H 0.053 0.947 46 H 0.042 0.958 47 H 0.204 0.796 48 H 0.059 0.941 49 H 0.066 0.934 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 11.062 30.239 -2.017 32.262 hybrid contribution -1.585 -1.066 0.174 1.918 sum 9.477 29.173 -1.843 30.729 Atomic orbital electron populations 1.20658 0.81120 1.05795 1.05503 1.24064 0.95987 0.83004 0.98231 1.84321 1.18222 1.35557 1.69708 1.27187 0.84690 0.90176 0.98370 1.20092 0.88235 0.94249 0.98993 1.21900 1.04248 0.99352 0.94956 1.21901 1.04253 0.99357 0.94958 1.70791 1.20657 1.09685 1.18676 1.21169 0.90215 0.94352 1.15759 1.16743 0.84354 0.83139 0.76614 1.90769 1.17264 1.83754 1.53423 1.48332 1.08499 1.05531 1.70641 1.22708 0.77078 0.99083 1.02000 1.22426 0.99862 0.92027 0.96349 0.86042 1.21737 1.01054 1.02738 0.93987 1.22360 0.93562 0.94609 1.00611 0.89531 1.20839 0.92945 0.87609 0.94637 1.42617 1.52857 1.16829 1.26684 1.19609 1.20508 0.93831 1.03665 0.90445 1.25611 1.00434 1.02540 0.98473 1.69828 1.34285 1.36874 1.21206 0.85188 0.77522 0.79460 0.77454 1.20003 1.22279 1.20553 1.21785 0.98265 0.79025 1.00486 0.87935 0.87268 0.88863 0.85570 0.88258 0.92681 0.92133 0.92780 0.88245 0.92128 0.87624 0.90719 0.95011 0.90306 0.91750 0.94739 0.95792 0.79636 0.94069 0.93411 0.93515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.44 9.88 71.24 0.70 -0.73 16 2 C 0.04 1.07 7.44 25.19 0.19 1.26 16 3 O -0.19 -3.94 10.73 0.40 0.00 -3.93 16 4 C 0.21 3.92 6.81 88.39 0.60 4.52 16 5 C 0.00 0.04 3.39 -11.55 -0.04 0.00 16 6 C -0.15 -1.07 9.17 71.98 0.66 -0.41 16 7 C -0.15 -1.09 9.17 71.98 0.66 -0.43 16 8 N -0.47 -11.48 8.44 -293.04 -2.47 -13.95 16 9 C -0.10 -2.79 6.81 40.41 0.28 -2.52 16 10 C 0.60 21.27 7.85 86.66 0.68 21.95 16 11 O -0.57 -23.39 15.13 -4.05 -0.06 -23.45 16 12 N -0.60 -19.94 3.31 -815.68 -2.70 -22.64 16 13 C 0.11 2.88 5.60 86.85 0.49 3.36 16 14 C -0.09 -2.13 3.54 -9.40 -0.03 -2.16 16 15 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 16 C -0.14 -3.33 8.13 71.98 0.59 -2.74 16 17 C -0.09 -3.04 2.88 -9.60 -0.03 -3.07 16 18 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 19 C 0.17 6.66 4.52 86.38 0.39 7.05 16 20 N -0.75 -39.11 5.45 -343.44 -1.87 -40.98 16 21 C -0.24 -14.00 9.99 84.03 0.84 -13.16 16 22 H 0.08 4.22 7.83 -2.91 -0.02 4.19 16 23 C -0.08 -4.65 5.50 84.86 0.47 -4.19 16 24 N -0.97 -61.55 13.06 21.65 0.28 -61.27 16 25 Si 0.98 47.39 29.55 68.60 2.03 49.42 16 26 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 27 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 28 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 29 C 0.13 4.80 5.83 86.73 0.51 5.31 16 30 H 0.10 1.75 8.14 -2.39 -0.02 1.74 16 31 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.09 2.25 6.48 -2.38 -0.02 2.24 16 33 H 0.13 1.04 8.14 -2.38 -0.02 1.02 16 34 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 35 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 36 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 38 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 39 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.11 2.55 6.07 -2.39 -0.01 2.54 16 41 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 42 H 0.03 0.91 7.91 -2.39 -0.02 0.89 16 43 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.06 1.59 6.76 -2.39 -0.02 1.58 16 45 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 46 H 0.02 0.99 6.67 -2.39 -0.02 0.97 16 47 H 0.37 20.93 7.52 -92.71 -0.70 20.24 16 48 H 0.25 15.42 8.31 -92.71 -0.77 14.65 16 49 H 0.05 2.06 7.76 -2.39 -0.02 2.04 16 50 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 Total: -1.00 -75.87 400.95 2.39 -73.48 By element: Atomic # 1 Polarization: 29.06 SS G_CDS: 0.24 Total: 29.30 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: 6.94 Total: 14.02 kcal Atomic # 7 Polarization: -132.08 SS G_CDS: -6.76 Total: -138.85 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -0.06 Total: -27.38 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.42 kcal Total: -75.87 2.39 -73.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569838001.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.904 kcal (2) G-P(sol) polarization free energy of solvation -75.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds