Wall clock time and date at job start Tue Mar 31 2020 19:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 O 1.34255 * 126.52594 * 2 1 4 4 C 1.34051 * 108.23022 * 179.97438 * 3 2 1 5 5 C 1.50696 * 125.38295 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.47143 * 299.98247 * 5 4 3 7 7 C 1.53002 * 109.46919 * 59.97665 * 5 4 3 8 8 N 1.29940 * 109.23759 * 359.72585 * 4 3 2 9 9 C 1.36061 * 108.48065 * 0.44089 * 8 4 3 10 10 C 1.47415 * 126.45333 * 179.82366 * 9 8 4 11 11 O 1.21616 * 120.00751 * 179.68645 * 10 9 8 12 12 N 1.34787 * 119.99706 * 359.69138 * 10 9 8 13 13 C 1.47418 * 125.64749 * 4.57531 * 12 10 9 14 14 C 1.54909 * 104.83149 * 204.16544 * 13 12 10 15 15 C 1.55152 * 101.58289 * 322.98960 * 14 13 12 16 16 C 1.47022 * 125.64723 * 184.62286 * 12 10 9 17 17 H 1.08999 * 109.88519 * 59.32509 * 16 12 10 18 18 C 1.53009 * 109.87808 * 298.31732 * 16 12 10 19 19 N 1.46496 * 109.46767 * 173.35023 * 18 16 12 20 20 C 1.46504 * 120.00250 * 267.03363 * 19 18 16 21 21 C 1.36937 * 119.99970 * 87.03541 * 19 18 16 22 22 H 1.07997 * 120.00646 * 3.46009 * 21 19 18 23 23 C 1.38817 * 120.00290 * 183.45917 * 21 19 18 24 24 N 1.31627 * 119.99268 * 352.46165 * 23 21 19 25 25 Si 1.86796 * 120.00325 * 172.73356 * 23 21 19 26 26 H 1.48497 * 109.47120 * 60.00524 * 25 23 21 27 27 H 1.48500 * 109.47093 * 180.02562 * 25 23 21 28 28 H 1.48496 * 109.46988 * 300.00104 * 25 23 21 29 29 H 1.08996 * 109.47586 * 270.02131 * 1 2 3 30 30 H 1.09006 * 109.47469 * 30.02744 * 1 2 3 31 31 H 1.09008 * 109.47313 * 150.02185 * 1 2 3 32 32 H 1.09000 * 109.47369 * 179.97438 * 5 4 3 33 33 H 1.08990 * 109.47199 * 59.99673 * 6 5 4 34 34 H 1.09001 * 109.46854 * 179.97438 * 6 5 4 35 35 H 1.09005 * 109.46745 * 299.99467 * 6 5 4 36 36 H 1.09000 * 109.46927 * 60.00218 * 7 5 4 37 37 H 1.09001 * 109.47068 * 179.97438 * 7 5 4 38 38 H 1.09000 * 109.47521 * 300.00422 * 7 5 4 39 39 H 1.09003 * 110.37147 * 323.00320 * 13 12 10 40 40 H 1.08997 * 110.36961 * 85.21763 * 13 12 10 41 41 H 1.08999 * 111.00442 * 81.06701 * 14 13 12 42 42 H 1.08997 * 111.00334 * 204.91485 * 14 13 12 43 43 H 1.08999 * 110.72357 * 277.13781 * 15 14 13 44 44 H 1.09001 * 110.72153 * 153.86226 * 15 14 13 45 45 H 1.08998 * 109.47067 * 53.35162 * 18 16 12 46 46 H 1.09002 * 109.47113 * 293.35049 * 18 16 12 47 47 H 1.08991 * 109.47014 * 242.06010 * 20 19 18 48 48 H 1.09005 * 109.46887 * 2.05961 * 20 19 18 49 49 H 1.09000 * 109.47168 * 122.05515 * 20 19 18 50 50 H 0.97003 * 119.99037 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.3060 1.0789 0.0000 4 6 3.5787 0.6580 0.0006 5 6 4.7929 1.5506 0.0013 6 6 4.7775 2.4337 -1.2480 7 6 4.7756 2.4340 1.2504 8 7 3.6001 -0.6412 0.0068 9 6 2.3169 -1.0937 0.0005 10 6 1.8852 -2.5032 0.0006 11 8 0.7001 -2.7763 0.0003 12 7 2.8040 -3.4894 0.0012 13 6 4.2633 -3.3040 0.0972 14 6 4.8680 -4.5743 -0.5512 15 6 3.8714 -5.6674 -0.0831 16 6 2.5168 -4.9280 -0.0949 17 1 1.9848 -5.1387 -1.0226 18 6 1.6718 -5.3709 1.1013 19 7 1.2578 -6.7641 0.9176 20 6 -0.0291 -7.0689 0.2872 21 6 2.0737 -7.7816 1.3351 22 1 2.9962 -7.5575 1.8499 23 6 1.7150 -9.1013 1.0966 24 7 0.5268 -9.3815 0.6046 25 14 2.9157 -10.4796 1.4811 26 1 3.2510 -10.4549 2.9275 27 1 2.2967 -11.7852 1.1383 28 1 4.1539 -10.2945 0.6826 29 1 -0.3634 0.0004 1.0276 30 1 -0.3634 0.8898 -0.5143 31 1 -0.3634 -0.8902 -0.5135 32 1 5.6944 0.9379 0.0021 33 1 3.8761 3.0464 -1.2488 34 1 5.6555 3.0797 -1.2472 35 1 4.7898 1.8044 -2.1380 36 1 4.7866 1.8049 2.1405 37 1 5.6541 3.0794 1.2512 38 1 3.8742 3.0468 1.2498 39 1 4.5699 -2.4145 -0.4532 40 1 4.5681 -3.2270 1.1409 41 1 4.8758 -4.4922 -1.6380 42 1 5.8698 -4.7692 -0.1684 43 1 4.1164 -6.0075 0.9231 44 1 3.8602 -6.5038 -0.7820 45 1 0.7888 -4.7365 1.1772 46 1 2.2610 -5.2843 2.0143 47 1 -0.6627 -7.6034 0.9948 48 1 -0.5176 -6.1404 -0.0087 49 1 0.1357 -7.6894 -0.5937 50 1 0.2763 -10.3037 0.4377 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674450208.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:32 Heat of formation + Delta-G solvation = 16.035965 kcal Electronic energy + Delta-G solvation = -30176.284089 eV Core-core repulsion = 26206.358821 eV Total energy + Delta-G solvation = -3969.925268 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.58462 -39.71118 -37.26068 -36.11212 -35.28924 -34.79592 -32.08792 -31.49148 -31.15651 -28.91238 -27.67218 -27.34004 -25.81647 -25.11335 -24.23868 -22.93382 -22.19909 -21.26774 -20.97365 -19.75138 -18.73411 -17.16422 -17.08647 -16.80700 -16.33428 -15.84645 -15.31676 -15.02255 -14.63873 -14.52803 -14.13592 -13.74681 -13.68856 -13.49759 -13.20967 -13.08125 -12.93765 -12.66060 -12.64545 -12.63825 -12.46131 -12.05305 -11.94270 -11.77096 -11.70018 -11.49836 -11.33173 -11.13718 -11.06584 -10.85738 -10.67032 -10.38886 -10.36042 -10.17699 -10.07450 -9.83476 -9.62756 -9.47156 -8.90910 -8.48979 -8.20753 -6.78662 -5.54804 -2.96242 1.03828 1.95405 2.30928 3.18129 3.43247 3.46588 3.48395 3.49533 3.62869 4.34285 4.51862 4.55701 4.57761 4.63446 4.82180 4.99570 5.07079 5.13972 5.18774 5.27577 5.31946 5.34859 5.36396 5.41637 5.47389 5.51567 5.70374 5.73229 5.74463 5.76113 5.78545 5.85165 5.95244 5.96926 6.09921 6.21475 6.24214 6.45495 6.51926 6.68775 6.73787 6.91555 6.99013 7.08666 7.39365 7.77172 7.81215 7.87865 8.05401 8.40987 8.48379 9.36694 10.00585 10.45367 11.44539 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020759 B = 0.002839 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.493143 B = 9860.785286 C =10812.066302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.034 3.966 3 O -0.196 6.196 4 C 0.192 3.808 5 C 0.004 3.996 6 C -0.150 4.150 7 C -0.150 4.150 8 N -0.452 5.452 9 C -0.064 4.064 10 C 0.608 3.392 11 O -0.532 6.532 12 N -0.593 5.593 13 C 0.100 3.900 14 C -0.140 4.140 15 C -0.107 4.107 16 C 0.116 3.884 17 H 0.070 0.930 18 C 0.149 3.851 19 N -0.606 5.606 20 C 0.170 3.830 21 C -0.239 4.239 22 H 0.073 0.927 23 C -0.007 4.007 24 N -0.917 5.917 25 Si 0.904 3.096 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.285 1.285 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.096 0.904 40 H 0.062 0.938 41 H 0.067 0.933 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.056 0.944 46 H 0.039 0.961 47 H 0.038 0.962 48 H -0.006 1.006 49 H 0.043 0.957 50 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.941 25.257 -2.902 26.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.022 4.022 3 O -0.083 6.083 4 C -0.017 4.017 5 C -0.015 4.015 6 C -0.208 4.208 7 C -0.208 4.208 8 N -0.182 5.182 9 C -0.184 4.184 10 C 0.395 3.605 11 O -0.410 6.410 12 N -0.325 5.325 13 C -0.023 4.023 14 C -0.178 4.178 15 C -0.145 4.145 16 C 0.011 3.989 17 H 0.088 0.912 18 C 0.020 3.980 19 N -0.330 5.330 20 C 0.026 3.974 21 C -0.369 4.369 22 H 0.091 0.909 23 C -0.203 4.203 24 N -0.566 5.566 25 Si 0.735 3.265 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.212 1.212 29 H 0.109 0.891 30 H 0.096 0.904 31 H 0.133 0.867 32 H 0.132 0.868 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.114 0.886 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.095 0.905 43 H 0.097 0.903 44 H 0.100 0.900 45 H 0.074 0.926 46 H 0.057 0.943 47 H 0.056 0.944 48 H 0.013 0.987 49 H 0.062 0.938 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 8.686 24.586 -2.917 26.238 hybrid contribution 0.226 -0.494 0.177 0.571 sum 8.912 24.092 -2.740 25.833 Atomic orbital electron populations 1.20592 0.82506 1.05321 1.04699 1.23724 0.95073 0.83215 1.00179 1.84269 1.17910 1.36279 1.69839 1.26214 0.84067 0.90332 1.01097 1.19752 0.89908 0.94258 0.97579 1.21898 1.03115 0.99526 0.96258 1.21899 1.03100 0.99533 0.96279 1.70840 1.21702 1.08433 1.17205 1.21572 0.88591 0.95686 1.12532 1.16289 0.84845 0.81763 0.77554 1.90792 1.15768 1.82731 1.51741 1.48452 1.06976 1.06874 1.70223 1.22515 0.79613 0.99255 1.00874 1.22875 0.99170 0.95333 1.00460 1.22565 0.92186 0.96786 1.02992 1.22764 0.97597 0.76453 1.02075 0.91191 1.21056 0.96761 0.86492 0.93729 1.44003 1.19173 0.99600 1.70187 1.21043 0.85210 0.93499 0.97647 1.19259 1.01334 0.85632 1.30639 0.90882 1.24855 0.96928 0.97296 1.01208 1.70248 1.18304 1.17411 1.50588 0.86322 0.80468 0.81855 0.77877 1.21274 1.21741 1.21199 0.89052 0.90409 0.86736 0.86765 0.91849 0.90815 0.91871 0.91831 0.90816 0.91844 0.88644 0.92004 0.91378 0.90455 0.90321 0.89987 0.92598 0.94277 0.94359 0.98744 0.93800 0.94030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.79 9.88 36.00 0.36 -0.44 16 2 C 0.03 0.45 7.44 -35.08 -0.26 0.19 16 3 O -0.20 -2.31 10.73 6.51 0.07 -2.24 16 4 C 0.19 2.14 6.81 -13.08 -0.09 2.05 16 5 C 0.00 0.03 3.39 -91.77 -0.31 -0.28 16 6 C -0.15 -0.84 9.18 37.16 0.34 -0.50 16 7 C -0.15 -0.86 9.18 37.16 0.34 -0.52 16 8 N -0.45 -6.19 8.36 -7.66 -0.06 -6.26 16 9 C -0.06 -0.98 6.82 -83.03 -0.57 -1.55 16 10 C 0.61 10.99 7.66 -12.52 -0.10 10.89 16 11 O -0.53 -10.74 13.59 5.26 0.07 -10.66 16 12 N -0.59 -10.48 3.06 -164.27 -0.50 -10.98 16 13 C 0.10 1.47 6.30 -2.53 -0.02 1.46 16 14 C -0.14 -1.96 7.08 -24.59 -0.17 -2.13 16 15 C -0.11 -1.92 5.49 -24.90 -0.14 -2.05 16 16 C 0.12 2.30 3.13 -66.95 -0.21 2.09 16 17 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 18 C 0.15 3.37 5.19 -4.04 -0.02 3.35 16 19 N -0.61 -15.94 2.91 -181.11 -0.53 -16.47 16 20 C 0.17 4.56 8.99 59.85 0.54 5.10 16 21 C -0.24 -6.58 8.73 -15.06 -0.13 -6.72 16 22 H 0.07 1.93 6.95 -52.49 -0.36 1.56 16 23 C -0.01 -0.20 5.44 -17.43 -0.09 -0.29 16 24 N -0.92 -27.25 9.46 55.49 0.53 -26.73 16 25 Si 0.90 22.13 29.56 -169.99 -5.02 17.10 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 28 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 29 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.11 1.41 6.48 -51.92 -0.34 1.08 16 32 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 38 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.10 1.33 5.88 -51.93 -0.31 1.03 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.08 1.48 6.69 -51.93 -0.35 1.13 16 44 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 45 H 0.06 1.32 6.26 -51.93 -0.33 1.00 16 46 H 0.04 0.88 7.90 -51.93 -0.41 0.47 16 47 H 0.04 1.10 7.17 -51.93 -0.37 0.73 16 48 H -0.01 -0.15 7.77 -51.93 -0.40 -0.56 16 49 H 0.04 1.25 6.91 -51.93 -0.36 0.89 16 50 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 394.01 15.07 5.94 5.94 Total: -1.00 -32.67 394.01 -8.32 -40.99 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -8.28 Total: -1.34 kcal Atomic # 6 Polarization: 11.18 SS G_CDS: -0.53 Total: 10.65 kcal Atomic # 7 Polarization: -59.86 SS G_CDS: -0.57 Total: -60.43 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.14 Total: -12.91 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.67 -8.32 -40.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674450208.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.029 kcal (2) G-P(sol) polarization free energy of solvation -32.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds