Wall clock time and date at job start Tue Mar 31 2020 19:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 O 1.34255 * 126.52594 * 2 1 4 4 C 1.34051 * 108.23022 * 179.97438 * 3 2 1 5 5 C 1.50696 * 125.38295 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.47143 * 299.98247 * 5 4 3 7 7 C 1.53002 * 109.46919 * 59.97665 * 5 4 3 8 8 N 1.29940 * 109.23759 * 359.72585 * 4 3 2 9 9 C 1.36061 * 108.48065 * 0.44089 * 8 4 3 10 10 C 1.47415 * 126.45333 * 179.82366 * 9 8 4 11 11 O 1.21616 * 120.00751 * 179.68645 * 10 9 8 12 12 N 1.34787 * 119.99706 * 359.69138 * 10 9 8 13 13 C 1.47418 * 125.64749 * 4.57531 * 12 10 9 14 14 C 1.54909 * 104.83149 * 204.16544 * 13 12 10 15 15 C 1.55152 * 101.58289 * 322.98960 * 14 13 12 16 16 C 1.47022 * 125.64723 * 184.62286 * 12 10 9 17 17 H 1.08999 * 109.88519 * 59.32509 * 16 12 10 18 18 C 1.53009 * 109.87808 * 298.31732 * 16 12 10 19 19 N 1.46496 * 109.46767 * 173.35023 * 18 16 12 20 20 C 1.46504 * 120.00250 * 267.03363 * 19 18 16 21 21 C 1.36937 * 119.99970 * 87.03541 * 19 18 16 22 22 H 1.07997 * 120.00646 * 3.46009 * 21 19 18 23 23 C 1.38817 * 120.00290 * 183.45917 * 21 19 18 24 24 N 1.31627 * 119.99268 * 352.46165 * 23 21 19 25 25 Si 1.86796 * 120.00325 * 172.73356 * 23 21 19 26 26 H 1.48497 * 109.47120 * 60.00524 * 25 23 21 27 27 H 1.48500 * 109.47093 * 180.02562 * 25 23 21 28 28 H 1.48496 * 109.46988 * 300.00104 * 25 23 21 29 29 H 1.08996 * 109.47586 * 270.02131 * 1 2 3 30 30 H 1.09006 * 109.47469 * 30.02744 * 1 2 3 31 31 H 1.09008 * 109.47313 * 150.02185 * 1 2 3 32 32 H 1.09000 * 109.47369 * 179.97438 * 5 4 3 33 33 H 1.08990 * 109.47199 * 59.99673 * 6 5 4 34 34 H 1.09001 * 109.46854 * 179.97438 * 6 5 4 35 35 H 1.09005 * 109.46745 * 299.99467 * 6 5 4 36 36 H 1.09000 * 109.46927 * 60.00218 * 7 5 4 37 37 H 1.09001 * 109.47068 * 179.97438 * 7 5 4 38 38 H 1.09000 * 109.47521 * 300.00422 * 7 5 4 39 39 H 1.09003 * 110.37147 * 323.00320 * 13 12 10 40 40 H 1.08997 * 110.36961 * 85.21763 * 13 12 10 41 41 H 1.08999 * 111.00442 * 81.06701 * 14 13 12 42 42 H 1.08997 * 111.00334 * 204.91485 * 14 13 12 43 43 H 1.08999 * 110.72357 * 277.13781 * 15 14 13 44 44 H 1.09001 * 110.72153 * 153.86226 * 15 14 13 45 45 H 1.08998 * 109.47067 * 53.35162 * 18 16 12 46 46 H 1.09002 * 109.47113 * 293.35049 * 18 16 12 47 47 H 1.08991 * 109.47014 * 242.06010 * 20 19 18 48 48 H 1.09005 * 109.46887 * 2.05961 * 20 19 18 49 49 H 1.09000 * 109.47168 * 122.05515 * 20 19 18 50 50 H 0.97003 * 119.99037 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.3060 1.0789 0.0000 4 6 3.5787 0.6580 0.0006 5 6 4.7929 1.5506 0.0013 6 6 4.7775 2.4337 -1.2480 7 6 4.7756 2.4340 1.2504 8 7 3.6001 -0.6412 0.0068 9 6 2.3169 -1.0937 0.0005 10 6 1.8852 -2.5032 0.0006 11 8 0.7001 -2.7763 0.0003 12 7 2.8040 -3.4894 0.0012 13 6 4.2633 -3.3040 0.0972 14 6 4.8680 -4.5743 -0.5512 15 6 3.8714 -5.6674 -0.0831 16 6 2.5168 -4.9280 -0.0949 17 1 1.9848 -5.1387 -1.0226 18 6 1.6718 -5.3709 1.1013 19 7 1.2578 -6.7641 0.9176 20 6 -0.0291 -7.0689 0.2872 21 6 2.0737 -7.7816 1.3351 22 1 2.9962 -7.5575 1.8499 23 6 1.7150 -9.1013 1.0966 24 7 0.5268 -9.3815 0.6046 25 14 2.9157 -10.4796 1.4811 26 1 3.2510 -10.4549 2.9275 27 1 2.2967 -11.7852 1.1383 28 1 4.1539 -10.2945 0.6826 29 1 -0.3634 0.0004 1.0276 30 1 -0.3634 0.8898 -0.5143 31 1 -0.3634 -0.8902 -0.5135 32 1 5.6944 0.9379 0.0021 33 1 3.8761 3.0464 -1.2488 34 1 5.6555 3.0797 -1.2472 35 1 4.7898 1.8044 -2.1380 36 1 4.7866 1.8049 2.1405 37 1 5.6541 3.0794 1.2512 38 1 3.8742 3.0468 1.2498 39 1 4.5699 -2.4145 -0.4532 40 1 4.5681 -3.2270 1.1409 41 1 4.8758 -4.4922 -1.6380 42 1 5.8698 -4.7692 -0.1684 43 1 4.1164 -6.0075 0.9231 44 1 3.8602 -6.5038 -0.7820 45 1 0.7888 -4.7365 1.1772 46 1 2.2610 -5.2843 2.0143 47 1 -0.6627 -7.6034 0.9948 48 1 -0.5176 -6.1404 -0.0087 49 1 0.1357 -7.6894 -0.5937 50 1 0.2763 -10.3037 0.4377 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674450208.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:31 Heat of formation + Delta-G solvation = -4.133767 kcal Electronic energy + Delta-G solvation = -30177.158714 eV Core-core repulsion = 26206.358821 eV Total energy + Delta-G solvation = -3970.799893 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.56359 -41.14488 -38.75242 -37.20306 -36.71812 -35.86694 -33.46958 -32.98972 -32.55255 -30.63400 -28.36451 -28.08739 -27.97176 -26.77129 -25.47809 -23.91880 -23.35806 -22.86145 -22.25662 -21.11506 -19.95431 -18.87748 -18.41876 -18.06830 -17.50867 -17.10278 -16.68138 -16.20916 -16.14270 -15.56002 -15.44518 -15.22872 -15.03329 -14.59443 -14.56997 -14.34121 -14.19189 -14.02967 -13.79800 -13.64511 -13.46272 -13.42165 -13.03672 -12.86527 -12.82169 -12.60655 -12.59439 -12.47137 -12.32336 -12.30109 -12.12497 -12.08991 -11.96739 -11.89030 -11.63263 -11.51497 -11.36506 -11.02967 -10.62157 -10.00545 -9.66137 -8.90148 -7.71692 -5.16356 -0.01757 0.92588 1.38311 1.48421 1.51470 1.57725 1.87197 2.16389 2.54054 2.72350 3.35361 3.42843 3.55158 3.64785 3.83136 3.90517 3.92521 4.06576 4.07458 4.15172 4.24804 4.30862 4.40088 4.46862 4.48573 4.53099 4.72858 4.77678 4.78562 4.80641 4.85656 4.88923 4.92070 4.95039 5.03249 5.07070 5.08570 5.10465 5.14820 5.21482 5.32222 5.33558 5.38534 5.47450 5.52462 5.62670 5.80420 6.29053 6.36713 6.53471 7.02008 7.17604 7.87858 8.31171 9.27836 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020759 B = 0.002839 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.493143 B = 9860.785286 C =10812.066302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.043 3.957 3 O -0.191 6.191 4 C 0.204 3.796 5 C 0.004 3.996 6 C -0.146 4.146 7 C -0.147 4.147 8 N -0.472 5.472 9 C -0.095 4.095 10 C 0.602 3.398 11 O -0.565 6.565 12 N -0.597 5.597 13 C 0.103 3.897 14 C -0.123 4.123 15 C -0.104 4.104 16 C 0.126 3.874 17 H 0.043 0.957 18 C 0.156 3.844 19 N -0.620 5.620 20 C 0.191 3.809 21 C -0.242 4.242 22 H 0.085 0.915 23 C -0.066 4.066 24 N -0.951 5.951 25 Si 0.973 3.027 26 H -0.278 1.278 27 H -0.299 1.299 28 H -0.272 1.272 29 H 0.101 0.899 30 H 0.108 0.892 31 H 0.094 0.906 32 H 0.126 0.874 33 H 0.060 0.940 34 H 0.099 0.901 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.099 0.901 38 H 0.060 0.940 39 H 0.107 0.893 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.109 0.891 43 H 0.071 0.929 44 H 0.067 0.933 45 H 0.040 0.960 46 H 0.040 0.960 47 H 0.013 0.987 48 H 0.006 0.994 49 H 0.022 0.978 50 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.913 27.653 -2.727 30.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.014 4.014 3 O -0.079 6.079 4 C -0.006 4.006 5 C -0.016 4.016 6 C -0.204 4.204 7 C -0.204 4.204 8 N -0.200 5.200 9 C -0.213 4.213 10 C 0.391 3.609 11 O -0.445 6.445 12 N -0.329 5.329 13 C -0.018 4.018 14 C -0.161 4.161 15 C -0.142 4.142 16 C 0.021 3.979 17 H 0.061 0.939 18 C 0.028 3.972 19 N -0.344 5.344 20 C 0.046 3.954 21 C -0.371 4.371 22 H 0.103 0.897 23 C -0.258 4.258 24 N -0.601 5.601 25 Si 0.801 3.199 26 H -0.204 1.204 27 H -0.226 1.226 28 H -0.198 1.198 29 H 0.120 0.880 30 H 0.127 0.873 31 H 0.112 0.888 32 H 0.143 0.857 33 H 0.079 0.921 34 H 0.118 0.882 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.118 0.882 38 H 0.079 0.921 39 H 0.125 0.875 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.127 0.873 43 H 0.090 0.910 44 H 0.085 0.915 45 H 0.058 0.942 46 H 0.059 0.941 47 H 0.031 0.969 48 H 0.024 0.976 49 H 0.040 0.960 50 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 11.708 27.023 -2.736 29.577 hybrid contribution -0.721 -1.074 0.148 1.302 sum 10.988 25.949 -2.588 28.298 Atomic orbital electron populations 1.20647 0.81097 1.05786 1.05448 1.24063 0.95979 0.82980 0.98414 1.84313 1.18190 1.35591 1.69758 1.27192 0.84729 0.90197 0.98447 1.20089 0.88215 0.94243 0.99020 1.21898 1.04261 0.99330 0.94918 1.21900 1.04256 0.99340 0.94951 1.70764 1.20832 1.09688 1.18751 1.21247 0.90074 0.94557 1.15456 1.16731 0.84500 0.82983 0.76677 1.90764 1.17104 1.83554 1.53074 1.48487 1.08471 1.05685 1.70256 1.22660 0.77545 1.00095 1.01534 1.22859 0.99457 0.92786 1.01018 1.22439 0.92129 0.97301 1.02338 1.22294 0.98134 0.78509 0.98980 0.93920 1.21026 0.96586 0.84542 0.95034 1.44184 1.19007 1.00948 1.70290 1.20677 0.85498 0.93179 0.96039 1.19607 1.01475 0.85975 1.30081 0.89739 1.25696 0.98582 0.99751 1.01780 1.70454 1.20110 1.17350 1.52159 0.85234 0.78465 0.78145 0.78015 1.20409 1.22556 1.19768 0.88047 0.87339 0.88775 0.85661 0.92106 0.88242 0.92724 0.92821 0.88227 0.92102 0.87500 0.91438 0.90534 0.87297 0.91048 0.91457 0.94173 0.94124 0.96873 0.97595 0.95953 0.94702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.51 9.88 71.23 0.70 -0.81 16 2 C 0.04 1.09 7.44 25.18 0.19 1.27 16 3 O -0.19 -4.18 10.73 0.39 0.00 -4.18 16 4 C 0.20 4.16 6.81 88.39 0.60 4.76 16 5 C 0.00 0.04 3.39 -11.54 -0.04 0.00 16 6 C -0.15 -1.19 9.18 71.98 0.66 -0.53 16 7 C -0.15 -1.24 9.18 71.98 0.66 -0.58 16 8 N -0.47 -12.28 8.36 -293.04 -2.45 -14.73 16 9 C -0.09 -2.88 6.82 40.41 0.28 -2.61 16 10 C 0.60 22.20 7.66 86.66 0.66 22.86 16 11 O -0.56 -23.75 13.59 -4.08 -0.06 -23.81 16 12 N -0.60 -21.20 3.06 -791.87 -2.43 -23.62 16 13 C 0.10 2.86 6.30 86.86 0.55 3.41 16 14 C -0.12 -3.15 7.08 31.98 0.23 -2.93 16 15 C -0.10 -3.65 5.49 31.78 0.17 -3.48 16 16 C 0.13 5.12 3.13 45.34 0.14 5.26 16 17 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 18 C 0.16 7.26 5.19 86.38 0.45 7.71 16 19 N -0.62 -33.56 2.91 -726.92 -2.12 -35.68 16 20 C 0.19 10.71 8.99 127.77 1.15 11.86 16 21 C -0.24 -13.45 8.73 84.03 0.73 -12.71 16 22 H 0.08 4.42 6.95 -2.91 -0.02 4.40 16 23 C -0.07 -3.76 5.44 84.86 0.46 -3.30 16 24 N -0.95 -58.15 9.46 21.65 0.20 -57.94 16 25 Si 0.97 45.71 29.56 68.60 2.03 47.74 16 26 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 27 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 28 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 29 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.11 1.52 8.14 -2.38 -0.02 1.50 16 31 H 0.09 2.39 6.48 -2.38 -0.02 2.37 16 32 H 0.13 1.17 8.14 -2.39 -0.02 1.16 16 33 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 35 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 36 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 38 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.11 2.78 5.88 -2.39 -0.01 2.76 16 40 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.08 1.86 8.14 -2.39 -0.02 1.85 16 42 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 43 H 0.07 2.61 6.69 -2.39 -0.02 2.59 16 44 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 45 H 0.04 1.98 6.26 -2.39 -0.01 1.96 16 46 H 0.04 1.86 7.90 -2.39 -0.02 1.84 16 47 H 0.01 0.78 7.17 -2.39 -0.02 0.76 16 48 H 0.01 0.29 7.77 -2.38 -0.02 0.27 16 49 H 0.02 1.32 6.91 -2.39 -0.02 1.31 16 50 H 0.24 14.52 8.31 -92.71 -0.77 13.75 16 Total: -1.00 -73.05 394.01 3.71 -69.34 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: 0.93 Total: 12.68 kcal Atomic # 6 Polarization: 22.60 SS G_CDS: 7.60 Total: 30.19 kcal Atomic # 7 Polarization: -125.19 SS G_CDS: -6.79 Total: -131.98 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -0.05 Total: -27.99 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -73.05 3.71 -69.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674450208.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.209 kcal (2) G-P(sol) polarization free energy of solvation -73.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds