Wall clock time and date at job start Tue Mar 31 2020 20:10:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50696 * 1
3 3 N 1.33691 * 126.27385 * 2 1
4 4 C 1.30622 * 108.99492 * 180.25742 * 3 2 1
5 5 C 1.50696 * 125.41955 * 179.79212 * 4 3 2
6 6 C 1.53002 * 109.47250 * 299.97511 * 5 4 3
7 7 C 1.52996 * 109.47455 * 59.98000 * 5 4 3
8 8 O 1.33657 * 109.15331 * 359.77222 * 4 3 2
9 9 C 1.35351 * 107.68707 * 359.97438 * 8 4 3
10 10 C 1.46719 * 126.64511 * 179.97438 * 9 8 4
11 11 O 1.21687 * 119.99971 * 180.02562 * 10 9 8
12 12 N 1.34775 * 120.00059 * 0.02925 * 10 9 8
13 13 C 1.46497 * 120.00083 * 179.97438 * 12 10 9
14 14 C 1.53005 * 109.47062 * 180.02562 * 13 12 10
15 15 C 1.53000 * 109.46967 * 180.02562 * 14 13 12
16 16 H 1.08999 * 110.78170 * 308.24051 * 15 14 13
17 17 C 1.55158 * 110.72145 * 184.99928 * 15 14 13
18 18 C 1.54909 * 101.61642 * 206.15534 * 17 15 14
19 19 N 1.47423 * 104.83351 * 36.99324 * 18 17 15
20 20 C 1.36936 * 125.64594 * 155.90840 * 19 18 17
21 21 H 1.08007 * 120.00033 * 179.97438 * 20 19 18
22 22 C 1.38813 * 120.00281 * 359.97114 * 20 19 18
23 23 N 1.31616 * 120.00050 * 0.02562 * 22 20 19
24 24 Si 1.86798 * 119.99983 * 180.02562 * 22 20 19
25 25 H 1.48510 * 109.47129 * 359.97438 * 24 22 20
26 26 H 1.48497 * 109.47513 * 119.99988 * 24 22 20
27 27 H 1.48502 * 109.47290 * 240.00176 * 24 22 20
28 28 C 1.47016 * 108.70440 * 335.86643 * 19 18 17
29 29 H 1.08999 * 109.47195 * 270.13548 * 1 2 3
30 30 H 1.09003 * 109.47147 * 30.13524 * 1 2 3
31 31 H 1.08999 * 109.47366 * 150.12846 * 1 2 3
32 32 H 1.09005 * 109.46780 * 179.97438 * 5 4 3
33 33 H 1.08997 * 109.46832 * 180.02562 * 6 5 4
34 34 H 1.09003 * 109.46885 * 300.00514 * 6 5 4
35 35 H 1.08998 * 109.47078 * 59.99973 * 6 5 4
36 36 H 1.08995 * 109.47464 * 59.99392 * 7 5 4
37 37 H 1.09000 * 109.47225 * 180.02562 * 7 5 4
38 38 H 1.09005 * 109.46822 * 299.99601 * 7 5 4
39 39 H 0.97002 * 120.00212 * 359.97438 * 12 10 9
40 40 H 1.09007 * 109.46821 * 60.00505 * 13 12 10
41 41 H 1.08996 * 109.47722 * 300.00172 * 13 12 10
42 42 H 1.08996 * 109.47404 * 60.00468 * 14 13 12
43 43 H 1.09005 * 109.47092 * 300.00001 * 14 13 12
44 44 H 1.09002 * 111.00366 * 88.06052 * 17 15 14
45 45 H 1.09002 * 111.00429 * 324.25114 * 17 15 14
46 46 H 1.09000 * 110.36449 * 155.82966 * 18 17 15
47 47 H 1.09002 * 110.36579 * 278.03887 * 18 17 15
48 48 H 0.96996 * 120.00056 * 180.02562 * 23 22 20
49 49 H 1.09000 * 109.88531 * 120.47268 * 28 19 18
50 50 H 1.08996 * 109.88671 * 241.49081 * 28 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2979 1.0778 0.0000
4 6 3.5452 0.6898 -0.0055
5 6 4.7439 1.6031 -0.0119
6 6 4.7070 2.4845 -1.2620
7 6 4.7182 2.4872 1.2364
8 8 3.5889 -0.6460 -0.0042
9 6 2.3136 -1.0992 0.0030
10 6 1.8826 -2.5017 0.0063
11 8 0.6965 -2.7737 0.0125
12 7 2.8003 -3.4887 0.0027
13 6 2.3699 -4.8890 0.0066
14 6 3.5990 -5.8003 0.0019
15 6 3.1496 -7.2628 0.0053
16 1 2.4367 -7.4464 0.8092
17 6 4.3707 -8.2121 0.1272
18 6 3.8356 -9.4974 -0.5521
19 7 3.0017 -9.0153 -1.6681
20 6 2.7020 -9.7206 -2.8030
21 1 2.0792 -9.2770 -3.5658
22 6 3.1987 -11.0056 -2.9731
23 7 3.9572 -11.5464 -2.0434
24 14 2.7904 -11.9674 -4.5215
25 1 1.9265 -11.1420 -5.4036
26 1 4.0457 -12.3097 -5.2372
27 1 2.0736 -13.2152 -4.1547
28 6 2.5444 -7.6524 -1.3604
29 1 -0.3633 0.0024 1.0276
30 1 -0.3633 0.8888 -0.5159
31 1 -0.3634 -0.8911 -0.5118
32 1 5.6557 1.0057 -0.0153
33 1 5.5742 3.1446 -1.2668
34 1 4.7253 1.8545 -2.1514
35 1 3.7952 3.0817 -1.2587
36 1 4.7444 1.8594 2.1270
37 1 5.5850 3.1481 1.2316
38 1 3.8064 3.0846 1.2398
39 1 3.7457 -3.2719 -0.0025
40 1 1.7674 -5.0864 -0.8801
41 1 1.7767 -5.0844 0.8999
42 1 4.2012 -5.6028 0.8887
43 1 4.1926 -5.6051 -0.8913
44 1 4.6192 -8.3969 1.1723
45 1 5.2304 -7.8141 -0.4121
46 1 4.6623 -10.0996 -0.9289
47 1 3.2352 -10.0757 0.1502
48 1 4.3046 -12.4442 -2.1624
49 1 2.8918 -6.9623 -2.1294
50 1 1.4560 -7.6298 -1.3066
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001691912461.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:10:58
Heat of formation + Delta-G solvation = -11.048648 kcal
Electronic energy + Delta-G solvation = -28346.886284 eV
Core-core repulsion = 24375.786539 eV
Total energy + Delta-G solvation = -3971.099745 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.200 amu
Computer time = 1.05 seconds
Orbital eigenvalues (eV)
-43.79746 -39.75668 -37.83865 -36.37066 -35.79245 -35.09353 -33.08298 -31.46437
-30.81318 -29.11264 -28.16183 -27.74941 -26.52856 -24.99573 -24.33644 -22.65877
-21.85605 -21.06680 -20.74994 -20.10254 -19.45221 -18.27431 -17.29853 -16.90953
-16.63535 -16.09689 -15.73150 -15.04235 -14.94349 -14.83719 -14.59360 -14.23118
-13.84302 -13.65069 -13.54823 -13.50597 -13.33683 -12.73405 -12.63034 -12.54557
-12.30589 -12.25291 -11.96841 -11.87146 -11.73102 -11.65073 -11.58696 -11.26723
-11.11653 -11.09580 -10.90571 -10.77653 -10.43117 -10.14150 -9.99906 -9.92095
-9.75338 -9.46943 -9.40624 -9.01613 -8.63473 -6.80364 -5.63606 -3.04856
0.50095 2.00433 2.06264 2.84728 2.90667 3.40545 3.45861 3.46178
3.48675 4.21921 4.33147 4.43508 4.49268 4.50721 4.65376 4.88023
5.05385 5.06695 5.09741 5.12416 5.25981 5.26586 5.28091 5.37585
5.40717 5.48698 5.56374 5.56752 5.60269 5.60598 5.66531 5.73414
5.75603 5.84897 5.99209 6.02251 6.11088 6.19433 6.28361 6.38947
6.61168 6.63730 6.77269 6.98026 7.08779 7.32800 7.54452 7.65760
7.82264 7.87753 8.38679 9.24588 9.85657 10.50925 11.40433
Molecular weight = 335.20amu
Principal moments of inertia in cm(-1)
A = 0.019284 B = 0.001871 C = 0.001841
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1451.629428 B =14960.854143 C =15203.585322
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.081 4.081
2 C 0.082 3.918
3 N -0.483 5.483
4 C 0.225 3.775
5 C 0.000 4.000
6 C -0.145 4.145
7 C -0.144 4.144
8 O -0.189 6.189
9 C -0.120 4.120
10 C 0.607 3.393
11 O -0.513 6.513
12 N -0.715 5.715
13 C 0.117 3.883
14 C -0.117 4.117
15 C -0.097 4.097
16 H 0.073 0.927
17 C -0.139 4.139
18 C 0.151 3.849
19 N -0.605 5.605
20 C -0.220 4.220
21 H 0.077 0.923
22 C -0.014 4.014
23 N -0.923 5.923
24 Si 0.914 3.086
25 H -0.280 1.280
26 H -0.291 1.291
27 H -0.291 1.291
28 C 0.139 3.861
29 H 0.082 0.918
30 H 0.077 0.923
31 H 0.096 0.904
32 H 0.101 0.899
33 H 0.074 0.926
34 H 0.060 0.940
35 H 0.071 0.929
36 H 0.060 0.940
37 H 0.074 0.926
38 H 0.071 0.929
39 H 0.404 0.596
40 H 0.077 0.923
41 H 0.072 0.928
42 H 0.066 0.934
43 H 0.071 0.929
44 H 0.057 0.943
45 H 0.059 0.941
46 H 0.105 0.895
47 H 0.011 0.989
48 H 0.251 0.749
49 H 0.022 0.978
50 H 0.020 0.980
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.972 28.507 7.651 29.666
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.042 4.042
3 N -0.212 5.212
4 C 0.019 3.981
5 C -0.020 4.020
6 C -0.202 4.202
7 C -0.202 4.202
8 O -0.075 6.075
9 C -0.175 4.175
10 C 0.392 3.608
11 O -0.390 6.390
12 N -0.366 5.366
13 C -0.006 4.006
14 C -0.155 4.155
15 C -0.117 4.117
16 H 0.092 0.908
17 C -0.177 4.177
18 C 0.026 3.974
19 N -0.331 5.331
20 C -0.348 4.348
21 H 0.095 0.905
22 C -0.209 4.209
23 N -0.572 5.572
24 Si 0.745 3.255
25 H -0.205 1.205
26 H -0.218 1.218
27 H -0.218 1.218
28 C 0.013 3.987
29 H 0.100 0.900
30 H 0.095 0.905
31 H 0.115 0.885
32 H 0.119 0.881
33 H 0.093 0.907
34 H 0.079 0.921
35 H 0.090 0.910
36 H 0.079 0.921
37 H 0.093 0.907
38 H 0.090 0.910
39 H 0.239 0.761
40 H 0.096 0.904
41 H 0.091 0.909
42 H 0.085 0.915
43 H 0.090 0.910
44 H 0.075 0.925
45 H 0.078 0.922
46 H 0.123 0.877
47 H 0.029 0.971
48 H 0.062 0.938
49 H 0.040 0.960
50 H 0.038 0.962
Dipole moment (debyes) X Y Z Total
from point charges 2.011 28.651 7.546 29.697
hybrid contribution 0.485 -1.189 -0.731 1.478
sum 2.496 27.463 6.815 28.405
Atomic orbital electron populations
1.20402 0.85195 1.04469 1.03759 1.22092 0.98383 0.86357 0.97376
1.70285 1.00261 1.30970 1.19727 1.26590 0.95714 0.79122 0.96669
1.19793 0.90384 0.93158 0.98651 1.21858 1.03618 0.99430 0.95332
1.21854 1.03630 0.99387 0.95325 1.84443 1.29811 1.23772 1.69509
1.22948 0.81283 0.96349 1.16916 1.16299 0.85870 0.81268 0.77382
1.90878 1.15665 1.81816 1.50656 1.45990 1.09753 1.06806 1.74022
1.21633 0.98003 0.77754 1.03186 1.21805 0.96422 0.94757 1.02515
1.22100 0.98590 0.92219 0.98771 0.90845 1.23043 0.96422 0.98559
0.99701 1.21919 0.96102 0.91490 0.87894 1.44524 1.57884 1.11570
1.19155 1.19143 1.25375 0.95762 0.94559 0.90481 1.24793 1.00391
0.97193 0.98526 1.69813 1.38692 1.15404 1.33293 0.86000 0.77456
0.79860 0.82219 1.20531 1.21774 1.21774 1.21382 0.96091 0.88292
0.92908 0.89961 0.90451 0.88526 0.88052 0.90660 0.92063 0.91026
0.92120 0.90665 0.91033 0.76147 0.90442 0.90938 0.91505 0.91049
0.92473 0.92206 0.87697 0.97115 0.93841 0.96016 0.96213
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.81 9.87 36.00 0.36 -0.46 16
2 C 0.08 0.98 7.16 -82.47 -0.59 0.39 16
3 N -0.48 -5.41 11.26 -7.07 -0.08 -5.49 16
4 C 0.22 2.16 6.82 -12.79 -0.09 2.08 16
5 C 0.00 0.00 3.39 -91.77 -0.31 -0.31 16
6 C -0.14 -0.72 9.18 37.16 0.34 -0.38 16
7 C -0.14 -0.69 9.18 37.16 0.34 -0.35 16
8 O -0.19 -2.03 10.57 4.42 0.05 -1.99 16
9 C -0.12 -1.46 7.18 -36.84 -0.26 -1.73 16
10 C 0.61 7.98 7.79 -12.84 -0.10 7.88 16
11 O -0.51 -7.96 14.80 5.20 0.08 -7.88 16
12 N -0.72 -8.19 5.55 -61.60 -0.34 -8.54 16
13 C 0.12 1.46 5.56 -4.04 -0.02 1.44 16
14 C -0.12 -1.48 4.73 -26.73 -0.13 -1.60 16
15 C -0.10 -1.61 2.93 -88.75 -0.26 -1.87 16
16 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16
17 C -0.14 -2.55 6.53 -24.58 -0.16 -2.71 16
18 C 0.15 3.68 5.89 -2.53 -0.01 3.66 16
19 N -0.61 -15.72 3.39 -170.04 -0.58 -16.30 16
20 C -0.22 -6.24 10.27 -15.06 -0.15 -6.39 16
21 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16
22 C -0.01 -0.40 5.49 -17.43 -0.10 -0.49 16
23 N -0.92 -27.18 10.09 55.49 0.56 -26.62 16
24 Si 0.91 22.35 29.55 -169.99 -5.02 17.32 16
25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16
26 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16
27 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16
28 C 0.14 2.90 6.24 -3.04 -0.02 2.88 16
29 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16
30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16
31 H 0.10 1.07 6.47 -51.93 -0.34 0.73 16
32 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16
33 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16
34 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16
35 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16
36 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16
37 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16
38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16
39 H 0.40 3.80 8.27 -40.82 -0.34 3.46 16
40 H 0.08 1.09 7.69 -51.93 -0.40 0.69 16
41 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16
42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16
43 H 0.07 0.92 7.93 -51.93 -0.41 0.51 16
44 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16
45 H 0.06 1.08 8.05 -51.93 -0.42 0.66 16
46 H 0.11 2.88 5.88 -51.93 -0.31 2.57 16
47 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16
48 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16
49 H 0.02 0.45 7.68 -51.93 -0.40 0.05 16
50 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16
LS Contribution 404.97 15.07 6.10 6.10
Total: -1.00 -33.12 404.97 -8.90 -42.02
By element:
Atomic # 1 Polarization: 7.83 SS G_CDS: -8.49 Total: -0.66 kcal
Atomic # 6 Polarization: 3.20 SS G_CDS: -1.17 Total: 2.03 kcal
Atomic # 7 Polarization: -56.51 SS G_CDS: -0.44 Total: -56.95 kcal
Atomic # 8 Polarization: -9.99 SS G_CDS: 0.12 Total: -9.87 kcal
Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal
Total LS contribution 6.10 Total: 6.10 kcal
Total: -33.12 -8.90 -42.02 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001691912461.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 30.973 kcal
(2) G-P(sol) polarization free energy of solvation -33.122 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.149 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.900 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.021 kcal
(6) G-S(sol) free energy of system = (1) + (5) -11.049 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.05 seconds