Wall clock time and date at job start Tue Mar 31 2020 19:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29941 * 125.37420 * 2 1 4 4 C 1.36072 * 108.47364 * 180.16522 * 3 2 1 5 5 C 1.47420 * 126.44789 * 179.82035 * 4 3 2 6 6 O 1.21605 * 119.99906 * 173.93906 * 5 4 3 7 7 N 1.34775 * 119.99858 * 354.21860 * 5 4 3 8 8 C 1.46928 * 120.63277 * 6.15356 * 7 5 4 9 9 C 1.53191 * 108.77363 * 233.58873 * 8 7 5 10 10 C 1.53042 * 109.31122 * 305.36115 * 9 8 7 11 11 C 1.53039 * 109.53652 * 61.36668 * 10 9 8 12 12 H 1.09005 * 109.49709 * 58.58929 * 11 10 9 13 13 C 1.53002 * 109.49666 * 178.68251 * 11 10 9 14 14 C 1.46928 * 120.62733 * 185.87153 * 7 5 4 15 15 H 1.08993 * 109.58541 * 246.19785 * 14 7 5 16 16 C 1.52995 * 109.58721 * 6.62951 * 14 7 5 17 17 C 1.53002 * 109.47425 * 66.19820 * 16 14 7 18 18 N 1.46494 * 109.47160 * 175.86267 * 17 16 14 19 19 C 1.36934 * 119.99916 * 180.02562 * 18 17 16 20 20 H 1.08004 * 120.00257 * 359.97438 * 19 18 17 21 21 C 1.38816 * 120.00315 * 180.02562 * 19 18 17 22 22 N 1.31624 * 119.99523 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00395 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47180 * 89.99646 * 23 21 19 25 25 H 1.48500 * 109.47128 * 210.00097 * 23 21 19 26 26 H 1.48494 * 109.46801 * 329.99461 * 23 21 19 27 27 C 1.36092 * 107.10207 * 359.56391 * 4 3 2 28 28 C 1.50692 * 126.52446 * 180.24035 * 27 4 3 29 29 O 1.34041 * 125.38165 * 179.67651 * 2 1 3 30 30 H 1.09002 * 109.47272 * 180.29832 * 1 2 3 31 31 H 1.09000 * 109.47176 * 300.30042 * 1 2 3 32 32 H 1.09001 * 109.47200 * 60.29908 * 1 2 3 33 33 H 1.09003 * 109.58513 * 353.37071 * 8 7 5 34 34 H 1.08996 * 109.58903 * 113.65520 * 8 7 5 35 35 H 1.08994 * 109.50201 * 65.31695 * 9 8 7 36 36 H 1.09006 * 109.49676 * 185.41341 * 9 8 7 37 37 H 1.08997 * 109.45965 * 181.39021 * 10 9 8 38 38 H 1.08997 * 109.46154 * 301.34900 * 10 9 8 39 39 H 1.08993 * 109.47290 * 59.99955 * 13 11 10 40 40 H 1.08999 * 109.46998 * 180.02562 * 13 11 10 41 41 H 1.09001 * 109.47171 * 299.99716 * 13 11 10 42 42 H 1.09001 * 109.47315 * 186.19746 * 16 14 7 43 43 H 1.09002 * 109.46967 * 306.19650 * 16 14 7 44 44 H 1.08999 * 109.46640 * 295.86474 * 17 16 14 45 45 H 1.08998 * 109.46892 * 55.85966 * 17 16 14 46 46 H 0.97003 * 120.00374 * 359.97438 * 18 17 16 47 47 H 0.97000 * 119.99819 * 180.02562 * 22 21 19 48 48 H 1.08999 * 109.47180 * 89.99981 * 28 27 4 49 49 H 1.09005 * 109.47101 * 209.99700 * 28 27 4 50 50 H 1.08995 * 109.47627 * 329.99794 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2592 1.0595 0.0000 4 6 3.5612 0.6639 -0.0037 5 6 4.7439 1.5440 -0.0088 6 8 5.8572 1.0669 0.0994 7 7 4.5909 2.8777 -0.1276 8 6 3.2514 3.4815 -0.1178 9 6 3.0951 4.3546 -1.3668 10 6 4.2407 5.3678 -1.4226 11 6 5.5760 4.6258 -1.5161 12 1 5.5797 3.9940 -2.4043 13 6 6.7184 5.6397 -1.6049 14 6 5.7608 3.7562 -0.2632 15 1 5.8438 4.3927 0.6177 16 6 7.0255 2.9075 -0.4076 17 6 6.9757 2.1385 -1.7294 18 7 8.2291 1.4032 -1.9141 19 6 8.4154 0.6382 -3.0345 20 1 7.6381 0.5767 -3.7818 21 6 9.6030 -0.0591 -3.2094 22 7 10.5501 0.0156 -2.2984 23 14 9.8574 -1.1020 -4.7381 24 1 10.4755 -0.2743 -5.8048 25 1 10.7518 -2.2428 -4.4158 26 1 8.5470 -1.6181 -5.2088 27 6 3.5660 -0.6969 0.0039 28 6 4.7801 -1.5895 0.0084 29 8 2.2831 -1.0928 0.0062 30 1 -0.3634 -1.0277 0.0054 31 1 -0.3633 0.5185 0.8873 32 1 -0.3634 0.5092 -0.8927 33 1 2.4963 2.6954 -0.1247 34 1 3.1332 4.0939 0.7760 35 1 3.1221 3.7254 -2.2563 36 1 2.1431 4.8839 -1.3238 37 1 4.1182 6.0066 -2.2973 38 1 4.2281 5.9804 -0.5212 39 1 6.7148 6.2701 -0.7158 40 1 7.6691 5.1108 -1.6719 41 1 6.5852 6.2604 -2.4910 42 1 7.9015 3.5561 -0.3975 43 1 7.0862 2.2020 0.4211 44 1 6.1420 1.4366 -1.7101 45 1 6.8411 2.8399 -2.5528 46 1 8.9275 1.4587 -1.2432 47 1 11.3801 -0.4714 -2.4208 48 1 5.0733 -1.7990 1.0372 49 1 4.5455 -2.5247 -0.5000 50 1 5.5998 -1.0907 -0.5085 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692009342.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:00 Heat of formation + Delta-G solvation = 32.820966 kcal Electronic energy + Delta-G solvation = -31286.238415 eV Core-core repulsion = 27317.040999 eV Total energy + Delta-G solvation = -3969.197416 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.53200 -40.52638 -37.49684 -35.56206 -34.59621 -33.41211 -33.15347 -32.49900 -30.72629 -30.18992 -28.56344 -26.39229 -26.24554 -24.87128 -23.43537 -22.81946 -22.12713 -21.62638 -21.00686 -19.73364 -18.83721 -17.17888 -17.12498 -16.71919 -15.99089 -15.64222 -15.28929 -14.77694 -14.56275 -14.38145 -14.30515 -14.10321 -13.65514 -13.43662 -13.34721 -13.23554 -12.94693 -12.83419 -12.80206 -12.71650 -12.46023 -12.31357 -12.20782 -11.83887 -11.64834 -11.38923 -11.21392 -11.05961 -10.92552 -10.86285 -10.60403 -10.53676 -10.15273 -10.09462 -9.76436 -9.64780 -9.48041 -8.82960 -8.64055 -8.57533 -8.15939 -6.61583 -5.58136 -2.82675 1.14165 1.93904 2.40408 3.12530 3.51342 3.52193 3.56838 3.58734 3.74351 4.59321 4.62000 4.74536 4.86823 4.92869 4.95624 5.04117 5.05038 5.15211 5.20673 5.31804 5.43046 5.44592 5.54459 5.59200 5.61616 5.72064 5.73640 5.75480 5.82930 5.84047 5.89353 5.90642 6.02734 6.10029 6.22923 6.26371 6.28965 6.43501 6.46839 6.53388 6.61870 6.65232 6.79216 6.95565 7.23837 7.36864 7.44279 7.72698 7.84877 8.52271 8.62132 9.72147 10.37981 10.72723 11.65499 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009391 B = 0.004678 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2980.834629 B = 5983.958770 C = 8119.032661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.184 3.816 3 N -0.457 5.457 4 C -0.070 4.070 5 C 0.588 3.412 6 O -0.485 6.485 7 N -0.592 5.592 8 C 0.062 3.938 9 C -0.130 4.130 10 C -0.115 4.115 11 C -0.108 4.108 12 H 0.085 0.915 13 C -0.144 4.144 14 C 0.161 3.839 15 H 0.066 0.934 16 C -0.141 4.141 17 C 0.164 3.836 18 N -0.726 5.726 19 C -0.224 4.224 20 H 0.064 0.936 21 C -0.019 4.019 22 N -0.935 5.935 23 Si 0.901 3.099 24 H -0.292 1.292 25 H -0.293 1.293 26 H -0.284 1.284 27 C 0.046 3.954 28 C -0.079 4.079 29 O -0.198 6.198 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.152 0.848 34 H 0.054 0.946 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.050 0.950 40 H 0.067 0.933 41 H 0.053 0.947 42 H 0.055 0.945 43 H 0.110 0.890 44 H 0.027 0.973 45 H 0.003 0.997 46 H 0.382 0.618 47 H 0.252 0.748 48 H 0.091 0.909 49 H 0.078 0.922 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.643 5.898 7.522 24.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.024 4.024 3 N -0.188 5.188 4 C -0.189 4.189 5 C 0.375 3.625 6 O -0.360 6.360 7 N -0.324 5.324 8 C -0.060 4.060 9 C -0.168 4.168 10 C -0.153 4.153 11 C -0.127 4.127 12 H 0.103 0.897 13 C -0.202 4.202 14 C 0.058 3.942 15 H 0.084 0.916 16 C -0.178 4.178 17 C 0.037 3.963 18 N -0.369 5.369 19 C -0.355 4.355 20 H 0.082 0.918 21 C -0.214 4.214 22 N -0.585 5.585 23 Si 0.733 3.267 24 H -0.220 1.220 25 H -0.219 1.219 26 H -0.210 1.210 27 C -0.009 4.009 28 C -0.135 4.135 29 O -0.085 6.085 30 H 0.106 0.894 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.168 0.832 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.086 0.914 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.128 0.872 44 H 0.045 0.955 45 H 0.020 0.980 46 H 0.215 0.785 47 H 0.062 0.938 48 H 0.110 0.890 49 H 0.097 0.903 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -22.309 6.131 7.435 24.302 hybrid contribution 0.525 -0.971 -0.785 1.354 sum -21.785 5.161 6.650 23.354 Atomic orbital electron populations 1.20277 0.81159 1.04834 1.05080 1.26321 0.96440 0.78809 1.00788 1.70153 1.01283 1.28269 1.19137 1.21735 0.91831 0.92514 1.12861 1.16789 0.86017 0.81594 0.78058 1.90935 1.22436 1.74931 1.47740 1.47745 1.07679 1.05069 1.71954 1.22921 0.86003 1.00425 0.96686 1.21856 0.98205 0.97800 0.98947 1.21623 0.94560 0.97547 1.01534 1.21729 0.94664 0.96949 0.99384 0.89666 1.21785 0.98884 0.98436 1.01070 1.21404 0.85357 0.90853 0.96630 0.91560 1.22471 0.93879 0.98662 1.02783 1.20924 0.90497 0.92765 0.92118 1.42271 1.14955 1.55615 1.24015 1.19206 0.99245 1.19647 0.97443 0.91808 1.24662 0.96938 1.01483 0.98312 1.69670 1.06894 1.47159 1.34820 0.86266 0.77308 0.80072 0.83089 1.22002 1.21912 1.21043 1.23840 0.83504 0.94645 0.98950 1.20685 0.90302 0.97840 1.04712 1.84324 1.16679 1.37701 1.69834 0.89361 0.88450 0.88410 0.83158 0.92781 0.91870 0.91412 0.92144 0.92279 0.93081 0.91441 0.92805 0.92662 0.87201 0.95526 0.97967 0.78535 0.93834 0.89021 0.90326 0.85873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.30 10.51 36.01 0.38 0.08 16 2 C 0.18 2.00 8.30 -13.08 -0.11 1.90 16 3 N -0.46 -5.99 7.68 -7.65 -0.06 -6.05 16 4 C -0.07 -1.09 6.75 -83.02 -0.56 -1.65 16 5 C 0.59 10.20 6.30 -12.52 -0.08 10.13 16 6 O -0.49 -9.72 8.74 5.27 0.05 -9.68 16 7 N -0.59 -9.06 2.93 -166.23 -0.49 -9.54 16 8 C 0.06 0.78 6.34 -3.71 -0.02 0.76 16 9 C -0.13 -1.46 6.08 -26.61 -0.16 -1.63 16 10 C -0.12 -1.31 5.16 -26.69 -0.14 -1.45 16 11 C -0.11 -1.52 1.98 -90.27 -0.18 -1.69 16 12 H 0.09 1.41 5.96 -51.93 -0.31 1.10 16 13 C -0.14 -1.89 8.96 37.16 0.33 -1.56 16 14 C 0.16 2.47 2.68 -67.38 -0.18 2.29 16 15 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 16 C -0.14 -2.67 4.19 -26.73 -0.11 -2.78 16 17 C 0.16 3.72 4.93 -4.04 -0.02 3.70 16 18 N -0.73 -19.98 5.60 -59.91 -0.34 -20.31 16 19 C -0.22 -6.66 9.99 -15.06 -0.15 -6.81 16 20 H 0.06 1.87 7.83 -52.48 -0.41 1.46 16 21 C -0.02 -0.57 5.50 -17.43 -0.10 -0.66 16 22 N -0.94 -29.63 13.06 55.49 0.72 -28.91 16 23 Si 0.90 23.43 29.55 -169.99 -5.02 18.41 16 24 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 25 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 26 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 27 C 0.05 0.67 7.44 -35.08 -0.26 0.41 16 28 C -0.08 -1.09 9.82 36.00 0.35 -0.74 16 29 O -0.20 -2.51 10.73 6.53 0.07 -2.44 16 30 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.15 1.92 3.60 -80.70 -0.29 1.63 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.07 1.02 6.79 -51.93 -0.35 0.67 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.05 1.04 6.98 -51.93 -0.36 0.68 16 43 H 0.11 2.29 5.55 -53.91 -0.30 1.99 16 44 H 0.03 0.65 5.08 -51.93 -0.26 0.38 16 45 H 0.00 0.07 5.97 -51.93 -0.31 -0.25 16 46 H 0.38 11.12 7.67 -40.82 -0.31 10.80 16 47 H 0.25 7.70 8.31 -40.82 -0.34 7.36 16 48 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 49 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 50 H 0.12 2.13 6.62 -51.93 -0.34 1.79 16 LS Contribution 380.74 15.07 5.74 5.74 Total: -1.00 -34.66 380.74 -8.22 -42.88 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -7.89 Total: 9.63 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -1.00 Total: 0.28 kcal Atomic # 7 Polarization: -64.66 SS G_CDS: -0.16 Total: -64.81 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.12 Total: -12.12 kcal Atomic # 14 Polarization: 23.43 SS G_CDS: -5.02 Total: 18.41 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.66 -8.22 -42.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692009342.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.702 kcal (2) G-P(sol) polarization free energy of solvation -34.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds