Wall clock time and date at job start Tue Mar 31 2020 19:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29941 * 125.37420 * 2 1 4 4 C 1.36072 * 108.47364 * 180.16522 * 3 2 1 5 5 C 1.47420 * 126.44789 * 179.82035 * 4 3 2 6 6 O 1.21605 * 119.99906 * 173.93906 * 5 4 3 7 7 N 1.34775 * 119.99858 * 354.21860 * 5 4 3 8 8 C 1.46928 * 120.63277 * 6.15356 * 7 5 4 9 9 C 1.53191 * 108.77363 * 233.58873 * 8 7 5 10 10 C 1.53042 * 109.31122 * 305.36115 * 9 8 7 11 11 C 1.53039 * 109.53652 * 61.36668 * 10 9 8 12 12 H 1.09005 * 109.49709 * 58.58929 * 11 10 9 13 13 C 1.53002 * 109.49666 * 178.68251 * 11 10 9 14 14 C 1.46928 * 120.62733 * 185.87153 * 7 5 4 15 15 H 1.08993 * 109.58541 * 246.19785 * 14 7 5 16 16 C 1.52995 * 109.58721 * 6.62951 * 14 7 5 17 17 C 1.53002 * 109.47425 * 66.19820 * 16 14 7 18 18 N 1.46494 * 109.47160 * 175.86267 * 17 16 14 19 19 C 1.36934 * 119.99916 * 180.02562 * 18 17 16 20 20 H 1.08004 * 120.00257 * 359.97438 * 19 18 17 21 21 C 1.38816 * 120.00315 * 180.02562 * 19 18 17 22 22 N 1.31624 * 119.99523 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00395 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47180 * 89.99646 * 23 21 19 25 25 H 1.48500 * 109.47128 * 210.00097 * 23 21 19 26 26 H 1.48494 * 109.46801 * 329.99461 * 23 21 19 27 27 C 1.36092 * 107.10207 * 359.56391 * 4 3 2 28 28 C 1.50692 * 126.52446 * 180.24035 * 27 4 3 29 29 O 1.34041 * 125.38165 * 179.67651 * 2 1 3 30 30 H 1.09002 * 109.47272 * 180.29832 * 1 2 3 31 31 H 1.09000 * 109.47176 * 300.30042 * 1 2 3 32 32 H 1.09001 * 109.47200 * 60.29908 * 1 2 3 33 33 H 1.09003 * 109.58513 * 353.37071 * 8 7 5 34 34 H 1.08996 * 109.58903 * 113.65520 * 8 7 5 35 35 H 1.08994 * 109.50201 * 65.31695 * 9 8 7 36 36 H 1.09006 * 109.49676 * 185.41341 * 9 8 7 37 37 H 1.08997 * 109.45965 * 181.39021 * 10 9 8 38 38 H 1.08997 * 109.46154 * 301.34900 * 10 9 8 39 39 H 1.08993 * 109.47290 * 59.99955 * 13 11 10 40 40 H 1.08999 * 109.46998 * 180.02562 * 13 11 10 41 41 H 1.09001 * 109.47171 * 299.99716 * 13 11 10 42 42 H 1.09001 * 109.47315 * 186.19746 * 16 14 7 43 43 H 1.09002 * 109.46967 * 306.19650 * 16 14 7 44 44 H 1.08999 * 109.46640 * 295.86474 * 17 16 14 45 45 H 1.08998 * 109.46892 * 55.85966 * 17 16 14 46 46 H 0.97003 * 120.00374 * 359.97438 * 18 17 16 47 47 H 0.97000 * 119.99819 * 180.02562 * 22 21 19 48 48 H 1.08999 * 109.47180 * 89.99981 * 28 27 4 49 49 H 1.09005 * 109.47101 * 209.99700 * 28 27 4 50 50 H 1.08995 * 109.47627 * 329.99794 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2592 1.0595 0.0000 4 6 3.5612 0.6639 -0.0037 5 6 4.7439 1.5440 -0.0088 6 8 5.8572 1.0669 0.0994 7 7 4.5909 2.8777 -0.1276 8 6 3.2514 3.4815 -0.1178 9 6 3.0951 4.3546 -1.3668 10 6 4.2407 5.3678 -1.4226 11 6 5.5760 4.6258 -1.5161 12 1 5.5797 3.9940 -2.4043 13 6 6.7184 5.6397 -1.6049 14 6 5.7608 3.7562 -0.2632 15 1 5.8438 4.3927 0.6177 16 6 7.0255 2.9075 -0.4076 17 6 6.9757 2.1385 -1.7294 18 7 8.2291 1.4032 -1.9141 19 6 8.4154 0.6382 -3.0345 20 1 7.6381 0.5767 -3.7818 21 6 9.6030 -0.0591 -3.2094 22 7 10.5501 0.0156 -2.2984 23 14 9.8574 -1.1020 -4.7381 24 1 10.4755 -0.2743 -5.8048 25 1 10.7518 -2.2428 -4.4158 26 1 8.5470 -1.6181 -5.2088 27 6 3.5660 -0.6969 0.0039 28 6 4.7801 -1.5895 0.0084 29 8 2.2831 -1.0928 0.0062 30 1 -0.3634 -1.0277 0.0054 31 1 -0.3633 0.5185 0.8873 32 1 -0.3634 0.5092 -0.8927 33 1 2.4963 2.6954 -0.1247 34 1 3.1332 4.0939 0.7760 35 1 3.1221 3.7254 -2.2563 36 1 2.1431 4.8839 -1.3238 37 1 4.1182 6.0066 -2.2973 38 1 4.2281 5.9804 -0.5212 39 1 6.7148 6.2701 -0.7158 40 1 7.6691 5.1108 -1.6719 41 1 6.5852 6.2604 -2.4910 42 1 7.9015 3.5561 -0.3975 43 1 7.0862 2.2020 0.4211 44 1 6.1420 1.4366 -1.7101 45 1 6.8411 2.8399 -2.5528 46 1 8.9275 1.4587 -1.2432 47 1 11.3801 -0.4714 -2.4208 48 1 5.0733 -1.7990 1.0372 49 1 4.5455 -2.5247 -0.5000 50 1 5.5998 -1.0907 -0.5085 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692009342.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:59 Heat of formation + Delta-G solvation = 8.923949 kcal Electronic energy + Delta-G solvation = -31287.274667 eV Core-core repulsion = 27317.040999 eV Total energy + Delta-G solvation = -3970.233668 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -44.53752 -41.80455 -38.71084 -37.00986 -36.09695 -34.75737 -34.24124 -33.83088 -32.57937 -30.98000 -30.07670 -27.78140 -27.29078 -26.27711 -25.08287 -23.96448 -23.65486 -22.83520 -22.13176 -20.89194 -20.07616 -19.12735 -18.15494 -18.12995 -17.17033 -16.95750 -16.70224 -16.45421 -15.82173 -15.70524 -15.43905 -15.24782 -15.09066 -14.66003 -14.52399 -14.41297 -14.31079 -14.17200 -13.80816 -13.60981 -13.55416 -13.39742 -13.28520 -13.12930 -12.94807 -12.88545 -12.67692 -12.54355 -12.39166 -12.22250 -12.12292 -12.05488 -11.92146 -11.65476 -11.42810 -11.24194 -10.83934 -10.65749 -10.00279 -9.83527 -9.41605 -8.85574 -7.91873 -5.18640 0.04236 0.95036 1.42637 1.43847 1.45911 1.54226 1.96363 2.27755 2.56282 2.84824 3.39972 3.51370 3.60962 3.78645 3.82146 3.92858 4.11435 4.12620 4.16335 4.27455 4.32473 4.39945 4.51349 4.56534 4.57964 4.61961 4.67128 4.70531 4.73903 4.76877 4.81804 4.86659 4.88616 4.94002 5.01603 5.06300 5.11560 5.14854 5.21859 5.27730 5.34120 5.43316 5.44025 5.49981 5.55307 5.64806 5.93911 6.30107 6.35848 6.55783 7.23252 7.35192 8.15551 8.40737 9.32440 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009391 B = 0.004678 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2980.834629 B = 5983.958770 C = 8119.032661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.200 3.800 3 N -0.470 5.470 4 C -0.090 4.090 5 C 0.578 3.422 6 O -0.527 6.527 7 N -0.590 5.590 8 C 0.058 3.942 9 C -0.124 4.124 10 C -0.108 4.108 11 C -0.104 4.104 12 H 0.052 0.948 13 C -0.140 4.140 14 C 0.163 3.837 15 H 0.088 0.912 16 C -0.127 4.127 17 C 0.175 3.825 18 N -0.737 5.737 19 C -0.237 4.237 20 H 0.063 0.937 21 C -0.076 4.076 22 N -0.970 5.970 23 Si 0.972 3.028 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.273 1.273 27 C 0.034 3.966 28 C -0.072 4.072 29 O -0.198 6.198 30 H 0.108 0.892 31 H 0.119 0.881 32 H 0.115 0.885 33 H 0.153 0.847 34 H 0.072 0.928 35 H 0.042 0.958 36 H 0.099 0.901 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.037 0.963 41 H 0.066 0.934 42 H 0.051 0.949 43 H 0.091 0.909 44 H 0.016 0.984 45 H -0.001 1.001 46 H 0.369 0.631 47 H 0.251 0.749 48 H 0.102 0.898 49 H 0.098 0.902 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.882 6.915 7.321 27.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.008 4.008 3 N -0.201 5.201 4 C -0.208 4.208 5 C 0.366 3.634 6 O -0.405 6.405 7 N -0.322 5.322 8 C -0.064 4.064 9 C -0.162 4.162 10 C -0.146 4.146 11 C -0.124 4.124 12 H 0.071 0.929 13 C -0.198 4.198 14 C 0.060 3.940 15 H 0.106 0.894 16 C -0.164 4.164 17 C 0.049 3.951 18 N -0.378 5.378 19 C -0.369 4.369 20 H 0.081 0.919 21 C -0.268 4.268 22 N -0.621 5.621 23 Si 0.801 3.199 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.198 1.198 27 C -0.023 4.023 28 C -0.129 4.129 29 O -0.086 6.086 30 H 0.127 0.873 31 H 0.137 0.863 32 H 0.134 0.866 33 H 0.169 0.831 34 H 0.090 0.910 35 H 0.061 0.939 36 H 0.117 0.883 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.057 0.943 41 H 0.085 0.915 42 H 0.070 0.930 43 H 0.109 0.891 44 H 0.033 0.967 45 H 0.016 0.984 46 H 0.201 0.799 47 H 0.059 0.941 48 H 0.120 0.880 49 H 0.116 0.884 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -25.607 7.202 7.224 27.564 hybrid contribution 1.396 -1.276 -0.690 2.013 sum -24.212 5.926 6.534 25.768 Atomic orbital electron populations 1.20676 0.76928 1.06809 1.06862 1.27600 0.98197 0.77712 0.97299 1.70135 1.00141 1.29019 1.20776 1.21594 0.92444 0.92684 1.14114 1.17171 0.86213 0.82435 0.77592 1.90916 1.24037 1.75721 1.49816 1.47901 1.08834 1.04542 1.70950 1.23142 0.84276 1.00822 0.98127 1.21836 0.99745 0.97430 0.97239 1.21592 0.92381 0.97433 1.03151 1.21661 0.97071 0.96715 0.96923 0.92939 1.21751 0.96951 0.98267 1.02805 1.21384 0.83760 0.90472 0.98346 0.89426 1.22238 0.96122 0.98200 0.99856 1.20930 0.88062 0.92113 0.93960 1.42466 1.16133 1.55988 1.23214 1.19523 0.99402 1.19996 0.98016 0.91910 1.25519 0.96597 1.02964 1.01683 1.69842 1.07264 1.48172 1.36864 0.85159 0.77514 0.78118 0.79127 1.21236 1.21719 1.19789 1.23811 0.84395 0.94496 0.99566 1.20512 0.89232 0.98057 1.05068 1.84346 1.15893 1.38336 1.70006 0.87339 0.86290 0.86630 0.83120 0.91022 0.93918 0.88274 0.90747 0.90306 0.90835 0.94337 0.91526 0.93049 0.89112 0.96659 0.98373 0.79945 0.94069 0.87997 0.88371 0.89905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.39 10.51 71.24 0.75 0.35 16 2 C 0.20 3.95 8.30 88.39 0.73 4.69 16 3 N -0.47 -11.80 7.68 -293.04 -2.25 -14.05 16 4 C -0.09 -2.86 6.75 40.41 0.27 -2.59 16 5 C 0.58 20.94 6.30 86.66 0.55 21.49 16 6 O -0.53 -22.69 8.74 -4.05 -0.04 -22.73 16 7 N -0.59 -18.13 2.93 -798.09 -2.34 -20.47 16 8 C 0.06 1.34 6.34 86.36 0.55 1.89 16 9 C -0.12 -2.50 6.08 30.67 0.19 -2.31 16 10 C -0.11 -2.16 5.16 30.62 0.16 -2.00 16 11 C -0.10 -2.86 1.98 -10.57 -0.02 -2.88 16 12 H 0.05 1.79 5.96 -2.38 -0.01 1.77 16 13 C -0.14 -3.54 8.96 71.98 0.65 -2.90 16 14 C 0.16 5.02 2.68 45.12 0.12 5.14 16 15 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 16 C -0.13 -5.08 4.19 30.59 0.13 -4.95 16 17 C 0.18 8.44 4.93 86.38 0.43 8.86 16 18 N -0.74 -42.80 5.60 -343.46 -1.92 -44.73 16 19 C -0.24 -14.65 9.99 84.03 0.84 -13.81 16 20 H 0.06 3.80 7.83 -2.91 -0.02 3.78 16 21 C -0.08 -4.68 5.50 84.86 0.47 -4.21 16 22 N -0.97 -63.29 13.06 21.65 0.28 -63.00 16 23 Si 0.97 49.07 29.55 68.60 2.03 51.10 16 24 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 25 H -0.29 -14.52 7.11 99.48 0.71 -13.81 16 26 H -0.27 -13.12 7.11 99.48 0.71 -12.41 16 27 C 0.03 1.00 7.44 25.18 0.19 1.19 16 28 C -0.07 -2.12 9.82 71.23 0.70 -1.42 16 29 O -0.20 -4.81 10.73 0.45 0.00 -4.80 16 30 H 0.11 0.39 8.14 -2.39 -0.02 0.38 16 31 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.15 3.60 3.60 -59.19 -0.21 3.39 16 34 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16 37 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.04 1.18 6.79 -2.39 -0.02 1.17 16 41 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.05 2.05 6.98 -2.39 -0.02 2.03 16 43 H 0.09 4.05 5.55 -33.76 -0.19 3.87 16 44 H 0.02 0.80 5.08 -2.39 -0.01 0.79 16 45 H 0.00 -0.06 5.97 -2.39 -0.01 -0.08 16 46 H 0.37 22.83 7.67 -92.71 -0.71 22.12 16 47 H 0.25 15.69 8.31 -92.71 -0.77 14.92 16 48 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 49 H 0.10 2.37 8.14 -2.38 -0.02 2.35 16 50 H 0.08 3.15 6.62 -2.39 -0.02 3.14 16 Total: -1.00 -79.08 380.74 2.33 -76.75 By element: Atomic # 1 Polarization: 35.52 SS G_CDS: -0.13 Total: 35.40 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: 6.69 Total: 6.54 kcal Atomic # 7 Polarization: -136.02 SS G_CDS: -6.23 Total: -142.25 kcal Atomic # 8 Polarization: -27.50 SS G_CDS: -0.03 Total: -27.53 kcal Atomic # 14 Polarization: 49.07 SS G_CDS: 2.03 Total: 51.10 kcal Total: -79.08 2.33 -76.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692009342.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.673 kcal (2) G-P(sol) polarization free energy of solvation -79.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds