Wall clock time and date at job start Tue Mar 31 2020 20:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34181 * 127.02059 * 2 1 4 4 O 1.34214 * 109.12131 * 180.02562 * 3 2 1 5 5 C 1.33649 * 110.91059 * 359.97438 * 4 3 2 6 6 C 1.50708 * 125.80370 * 180.02562 * 5 4 3 7 7 C 1.36421 * 108.39581 * 359.71469 * 5 4 3 8 8 C 1.47381 * 127.18938 * 180.30663 * 7 5 4 9 9 O 1.21616 * 119.99873 * 270.14460 * 8 7 5 10 10 N 1.34771 * 120.00204 * 90.15313 * 8 7 5 11 11 C 1.46500 * 120.00275 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47277 * 179.97438 * 11 10 8 13 13 N 1.46898 * 109.47179 * 179.97438 * 12 11 10 14 14 C 1.46843 * 110.99957 * 45.79034 * 13 12 11 15 15 C 1.53040 * 109.52656 * 185.83863 * 14 13 12 16 16 C 1.53119 * 109.27697 * 300.82527 * 15 14 13 17 17 N 1.46507 * 109.57484 * 177.58873 * 16 15 14 18 18 C 1.36934 * 120.00066 * 85.28055 * 17 16 15 19 19 H 1.08001 * 120.00185 * 359.97438 * 18 17 16 20 20 C 1.38807 * 120.00231 * 179.97438 * 18 17 16 21 21 N 1.31621 * 120.00496 * 179.97438 * 20 18 17 22 22 Si 1.86806 * 119.99787 * 0.02562 * 20 18 17 23 23 H 1.48494 * 109.47117 * 89.99851 * 22 20 18 24 24 H 1.48495 * 109.46921 * 209.99810 * 22 20 18 25 25 H 1.48504 * 109.46829 * 329.99799 * 22 20 18 26 26 C 1.53119 * 109.16306 * 57.65341 * 16 15 14 27 27 C 1.46847 * 111.00288 * 170.00156 * 13 12 11 28 28 H 1.09002 * 109.47152 * 90.02784 * 1 2 3 29 29 H 1.09001 * 109.46980 * 330.02885 * 1 2 3 30 30 H 1.09004 * 109.47113 * 210.02866 * 1 2 3 31 31 H 1.07997 * 125.43877 * 359.97438 * 3 2 1 32 32 H 1.08994 * 109.46602 * 359.96874 * 6 5 4 33 33 H 1.08995 * 109.46976 * 119.97260 * 6 5 4 34 34 H 1.09000 * 109.46962 * 239.97224 * 6 5 4 35 35 H 0.97007 * 120.00107 * 359.97438 * 10 8 7 36 36 H 1.09004 * 109.47047 * 299.99917 * 11 10 8 37 37 H 1.08996 * 109.47299 * 59.99426 * 11 10 8 38 38 H 1.08991 * 109.47354 * 299.99916 * 12 11 10 39 39 H 1.09007 * 109.46682 * 60.00259 * 12 11 10 40 40 H 1.09000 * 109.46431 * 305.85684 * 14 13 12 41 41 H 1.08997 * 109.46340 * 65.82494 * 14 13 12 42 42 H 1.08995 * 109.50564 * 180.87624 * 15 14 13 43 43 H 1.09001 * 109.50033 * 60.76403 * 15 14 13 44 44 H 1.09000 * 109.51916 * 297.74622 * 16 15 14 45 45 H 0.96995 * 119.99662 * 265.28663 * 17 16 15 46 46 H 0.97000 * 120.00143 * 180.02562 * 21 20 18 47 47 H 1.09001 * 109.50295 * 182.40649 * 26 16 15 48 48 H 1.08994 * 109.50572 * 62.28253 * 26 16 15 49 49 H 1.09001 * 109.46042 * 294.18126 * 27 13 12 50 50 H 1.09004 * 109.45758 * 54.15403 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0713 0.0000 4 8 3.5921 0.6588 -0.0006 5 6 3.6623 -0.6758 -0.0004 6 6 4.9292 -1.4920 -0.0003 7 6 2.3922 -1.1737 0.0068 8 6 1.9914 -2.5920 0.0158 9 8 1.8249 -3.1835 -1.0336 10 7 1.8093 -3.2333 1.1871 11 6 1.4103 -4.6429 1.1961 12 6 1.2737 -5.1251 2.6417 13 7 0.8730 -6.5383 2.6508 14 6 1.6733 -7.3182 1.6980 15 6 1.1341 -8.7488 1.6278 16 6 1.2017 -9.3834 3.0196 17 7 0.6339 -10.7331 2.9718 18 6 1.4178 -11.7930 2.6016 19 1 2.4547 -11.6340 2.3445 20 6 0.8800 -13.0719 2.5568 21 7 1.6334 -14.0907 2.2005 22 14 -0.9136 -13.3469 3.0009 23 1 -1.7505 -13.2207 1.7808 24 1 -1.0783 -14.7061 3.5758 25 1 -1.3375 -12.3324 3.9991 26 6 0.4002 -8.5256 4.0027 27 6 0.9608 -7.1016 4.0040 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3633 0.8903 0.5134 30 1 -0.3633 -0.8898 0.5143 31 1 1.9895 2.1011 -0.0004 32 1 5.7911 -0.8249 -0.0010 33 1 4.9566 -2.1203 0.8899 34 1 4.9561 -2.1212 -0.8900 35 1 1.9423 -2.7616 2.0242 36 1 0.4544 -4.7532 0.6840 37 1 2.1670 -5.2380 0.6849 38 1 2.2297 -5.0148 3.1534 39 1 0.5170 -4.5300 3.1532 40 1 1.6132 -6.8586 0.7115 41 1 2.7123 -7.3376 2.0268 42 1 1.7379 -9.3316 0.9323 43 1 0.0993 -8.7312 1.2858 44 1 2.2405 -9.4366 3.3455 45 1 -0.2974 -10.8758 3.2023 46 1 1.2574 -14.9843 2.1689 47 1 0.4799 -8.9490 5.0039 48 1 -0.6460 -8.5045 3.6980 49 1 2.0032 -7.1219 4.3221 50 1 0.3831 -6.4847 4.6923 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699992590.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:29 Heat of formation + Delta-G solvation = -8.720724 kcal Electronic energy + Delta-G solvation = -28478.153100 eV Core-core repulsion = 24507.154302 eV Total energy + Delta-G solvation = -3970.998798 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.96585 -39.83635 -38.89877 -35.90926 -34.53545 -34.30148 -32.97484 -32.24584 -30.71399 -30.27593 -28.82848 -27.87560 -26.81426 -24.67112 -23.31803 -23.23745 -21.83453 -21.02761 -20.46511 -20.06855 -19.50187 -18.11546 -17.52054 -16.92494 -16.43783 -16.12688 -15.82225 -15.41378 -14.85464 -14.78936 -14.61861 -14.24468 -14.08610 -13.82376 -13.69692 -13.65245 -13.36152 -13.29535 -13.14455 -13.09834 -13.04241 -12.77569 -12.48751 -12.01501 -11.81090 -11.76540 -11.56239 -11.49554 -10.94524 -10.86046 -10.62014 -10.43266 -10.27534 -10.13977 -9.82207 -9.77034 -9.55665 -9.36418 -8.90206 -8.86876 -8.30555 -7.23542 -5.74705 -3.09848 1.19606 1.79779 2.23558 2.41332 2.88639 3.39976 3.43427 3.47629 3.96531 4.04261 4.36177 4.50341 4.58364 4.61627 4.69783 4.82429 4.84552 4.97451 5.07006 5.13068 5.17333 5.22083 5.22627 5.23663 5.35289 5.43287 5.47567 5.49069 5.57925 5.58292 5.68691 5.70656 5.74140 5.79636 5.95620 5.97117 6.05759 6.06456 6.18555 6.24027 6.40166 6.57678 6.63799 6.78714 6.99891 7.11457 7.15507 7.20134 7.89595 8.01830 8.44652 9.23553 9.96354 10.16777 11.43688 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.025643 B = 0.001854 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.655854 B =15095.061760 C =15373.315538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.147 4.147 3 C -0.041 4.041 4 O -0.173 6.173 5 C 0.046 3.954 6 C -0.083 4.083 7 C -0.232 4.232 8 C 0.593 3.407 9 O -0.527 6.527 10 N -0.721 5.721 11 C 0.113 3.887 12 C 0.046 3.954 13 N -0.532 5.532 14 C 0.049 3.951 15 C -0.132 4.132 16 C 0.182 3.818 17 N -0.748 5.748 18 C -0.242 4.242 19 H 0.089 0.911 20 C 0.003 3.997 21 N -0.935 5.935 22 Si 0.885 3.115 23 H -0.284 1.284 24 H -0.292 1.292 25 H -0.277 1.277 26 C -0.125 4.125 27 C 0.065 3.935 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.207 0.793 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.401 0.599 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.038 0.962 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.031 0.969 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.050 0.950 45 H 0.361 0.639 46 H 0.259 0.741 47 H 0.068 0.932 48 H 0.067 0.933 49 H 0.034 0.966 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.895 34.069 0.408 34.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.149 4.149 3 C -0.107 4.107 4 O -0.069 6.069 5 C -0.006 4.006 6 C -0.139 4.139 7 C -0.237 4.237 8 C 0.378 3.622 9 O -0.402 6.402 10 N -0.373 5.373 11 C -0.010 4.010 12 C -0.082 4.082 13 N -0.258 5.258 14 C -0.079 4.079 15 C -0.173 4.173 16 C 0.072 3.928 17 N -0.390 5.390 18 C -0.371 4.371 19 H 0.107 0.893 20 C -0.193 4.193 21 N -0.583 5.583 22 Si 0.716 3.284 23 H -0.211 1.211 24 H -0.218 1.218 25 H -0.203 1.203 26 C -0.163 4.163 27 C -0.064 4.064 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.224 0.776 32 H 0.103 0.897 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.235 0.765 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.056 0.944 39 H 0.097 0.903 40 H 0.093 0.907 41 H 0.050 0.950 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.068 0.932 45 H 0.194 0.806 46 H 0.069 0.931 47 H 0.086 0.914 48 H 0.086 0.914 49 H 0.052 0.948 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.717 33.586 -0.560 33.634 hybrid contribution -0.604 -0.062 0.895 1.082 sum 1.112 33.524 0.335 33.544 Atomic orbital electron populations 1.20207 0.88506 1.02872 1.02754 1.21358 0.96870 0.90473 1.06195 1.23638 0.79562 0.99573 1.07899 1.83736 1.29639 1.21856 1.71648 1.22558 0.96035 0.80827 1.01152 1.20479 0.91073 0.97870 1.04489 1.20987 0.93261 0.93901 1.15506 1.17248 0.76637 0.84638 0.83656 1.90844 1.50073 1.67616 1.31699 1.45944 1.70277 1.12613 1.08437 1.21607 1.01848 0.80185 0.97400 1.22210 0.99682 0.90973 0.95358 1.61996 1.55388 1.00410 1.07983 1.22319 0.94486 0.95352 0.95758 1.22276 1.01680 0.92502 1.00815 1.20214 0.96102 0.84436 0.92009 1.42778 1.10548 1.02862 1.82849 1.19072 0.94991 0.85418 1.37660 0.89314 1.24677 0.97470 0.95533 1.01611 1.69704 1.35169 0.99022 1.54404 0.86532 0.86571 0.77006 0.78329 1.21095 1.21847 1.20322 1.21898 1.00791 0.93288 1.00348 1.22036 0.99230 0.96240 0.88859 0.90872 0.91047 0.91369 0.77597 0.89739 0.89127 0.88880 0.76517 0.90198 0.90581 0.94399 0.90282 0.90663 0.95026 0.91177 0.91745 0.93210 0.80633 0.93117 0.91385 0.91403 0.94815 0.91147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.57 10.38 36.01 0.37 -0.20 16 2 C -0.15 -1.22 6.38 -102.49 -0.65 -1.88 16 3 C -0.04 -0.27 11.96 29.30 0.35 0.08 16 4 O -0.17 -1.43 10.52 7.66 0.08 -1.35 16 5 C 0.05 0.40 7.37 -34.96 -0.26 0.14 16 6 C -0.08 -0.49 10.18 36.01 0.37 -0.13 16 7 C -0.23 -2.29 6.07 -103.28 -0.63 -2.92 16 8 C 0.59 6.83 7.41 -12.54 -0.09 6.73 16 9 O -0.53 -8.31 17.11 5.26 0.09 -8.22 16 10 N -0.72 -6.41 5.55 -61.40 -0.34 -6.75 16 11 C 0.11 1.14 4.92 -4.04 -0.02 1.12 16 12 C 0.05 0.43 5.39 -3.82 -0.02 0.41 16 13 N -0.53 -6.59 4.81 -234.67 -1.13 -7.71 16 14 C 0.05 0.68 4.85 -3.83 -0.02 0.66 16 15 C -0.13 -2.31 5.68 -26.65 -0.15 -2.46 16 16 C 0.18 3.46 2.84 -67.80 -0.19 3.27 16 17 N -0.75 -17.72 4.93 -53.30 -0.26 -17.98 16 18 C -0.24 -6.81 10.42 -15.06 -0.16 -6.97 16 19 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 20 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 21 N -0.94 -29.53 13.97 55.49 0.78 -28.76 16 22 Si 0.89 22.32 27.74 -169.99 -4.71 17.60 16 23 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 25 H -0.28 -6.56 6.52 56.52 0.37 -6.20 16 26 C -0.12 -1.92 5.57 -26.65 -0.15 -2.07 16 27 C 0.06 0.80 5.42 -3.83 -0.02 0.78 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.21 0.58 8.06 -52.49 -0.42 0.16 16 32 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.40 2.53 8.46 -40.82 -0.35 2.19 16 36 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.08 0.87 6.21 -51.93 -0.32 0.54 16 38 H 0.04 0.33 8.08 -51.93 -0.42 -0.09 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.08 0.99 5.81 -51.93 -0.30 0.69 16 41 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 43 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 45 H 0.36 8.45 5.66 -40.82 -0.23 8.22 16 46 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 47 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 48 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 49 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 50 H 0.07 0.75 8.12 -51.93 -0.42 0.32 16 LS Contribution 404.53 15.07 6.10 6.10 Total: -1.00 -35.19 404.53 -9.16 -44.36 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -8.39 Total: 6.15 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: -1.37 Total: -3.45 kcal Atomic # 7 Polarization: -60.24 SS G_CDS: -0.96 Total: -61.20 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.17 Total: -9.57 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.71 Total: 17.60 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.19 -9.16 -44.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699992590.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.638 kcal (2) G-P(sol) polarization free energy of solvation -35.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds