Wall clock time and date at job start Tue Mar 31 2020 20:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34181 * 127.02059 * 2 1 4 4 O 1.34214 * 109.12131 * 180.02562 * 3 2 1 5 5 C 1.33649 * 110.91059 * 359.97438 * 4 3 2 6 6 C 1.50708 * 125.80370 * 180.02562 * 5 4 3 7 7 C 1.36421 * 108.39581 * 359.71469 * 5 4 3 8 8 C 1.47381 * 127.18938 * 180.30663 * 7 5 4 9 9 O 1.21616 * 119.99873 * 270.14460 * 8 7 5 10 10 N 1.34771 * 120.00204 * 90.15313 * 8 7 5 11 11 C 1.46500 * 120.00275 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47277 * 179.97438 * 11 10 8 13 13 N 1.46898 * 109.47179 * 179.97438 * 12 11 10 14 14 C 1.46843 * 110.99957 * 45.79034 * 13 12 11 15 15 C 1.53040 * 109.52656 * 185.83863 * 14 13 12 16 16 C 1.53119 * 109.27697 * 300.82527 * 15 14 13 17 17 N 1.46507 * 109.57484 * 177.58873 * 16 15 14 18 18 C 1.36934 * 120.00066 * 85.28055 * 17 16 15 19 19 H 1.08001 * 120.00185 * 359.97438 * 18 17 16 20 20 C 1.38807 * 120.00231 * 179.97438 * 18 17 16 21 21 N 1.31621 * 120.00496 * 179.97438 * 20 18 17 22 22 Si 1.86806 * 119.99787 * 0.02562 * 20 18 17 23 23 H 1.48494 * 109.47117 * 89.99851 * 22 20 18 24 24 H 1.48495 * 109.46921 * 209.99810 * 22 20 18 25 25 H 1.48504 * 109.46829 * 329.99799 * 22 20 18 26 26 C 1.53119 * 109.16306 * 57.65341 * 16 15 14 27 27 C 1.46847 * 111.00288 * 170.00156 * 13 12 11 28 28 H 1.09002 * 109.47152 * 90.02784 * 1 2 3 29 29 H 1.09001 * 109.46980 * 330.02885 * 1 2 3 30 30 H 1.09004 * 109.47113 * 210.02866 * 1 2 3 31 31 H 1.07997 * 125.43877 * 359.97438 * 3 2 1 32 32 H 1.08994 * 109.46602 * 359.96874 * 6 5 4 33 33 H 1.08995 * 109.46976 * 119.97260 * 6 5 4 34 34 H 1.09000 * 109.46962 * 239.97224 * 6 5 4 35 35 H 0.97007 * 120.00107 * 359.97438 * 10 8 7 36 36 H 1.09004 * 109.47047 * 299.99917 * 11 10 8 37 37 H 1.08996 * 109.47299 * 59.99426 * 11 10 8 38 38 H 1.08991 * 109.47354 * 299.99916 * 12 11 10 39 39 H 1.09007 * 109.46682 * 60.00259 * 12 11 10 40 40 H 1.09000 * 109.46431 * 305.85684 * 14 13 12 41 41 H 1.08997 * 109.46340 * 65.82494 * 14 13 12 42 42 H 1.08995 * 109.50564 * 180.87624 * 15 14 13 43 43 H 1.09001 * 109.50033 * 60.76403 * 15 14 13 44 44 H 1.09000 * 109.51916 * 297.74622 * 16 15 14 45 45 H 0.96995 * 119.99662 * 265.28663 * 17 16 15 46 46 H 0.97000 * 120.00143 * 180.02562 * 21 20 18 47 47 H 1.09001 * 109.50295 * 182.40649 * 26 16 15 48 48 H 1.08994 * 109.50572 * 62.28253 * 26 16 15 49 49 H 1.09001 * 109.46042 * 294.18126 * 27 13 12 50 50 H 1.09004 * 109.45758 * 54.15403 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0713 0.0000 4 8 3.5921 0.6588 -0.0006 5 6 3.6623 -0.6758 -0.0004 6 6 4.9292 -1.4920 -0.0003 7 6 2.3922 -1.1737 0.0068 8 6 1.9914 -2.5920 0.0158 9 8 1.8249 -3.1835 -1.0336 10 7 1.8093 -3.2333 1.1871 11 6 1.4103 -4.6429 1.1961 12 6 1.2737 -5.1251 2.6417 13 7 0.8730 -6.5383 2.6508 14 6 1.6733 -7.3182 1.6980 15 6 1.1341 -8.7488 1.6278 16 6 1.2017 -9.3834 3.0196 17 7 0.6339 -10.7331 2.9718 18 6 1.4178 -11.7930 2.6016 19 1 2.4547 -11.6340 2.3445 20 6 0.8800 -13.0719 2.5568 21 7 1.6334 -14.0907 2.2005 22 14 -0.9136 -13.3469 3.0009 23 1 -1.7505 -13.2207 1.7808 24 1 -1.0783 -14.7061 3.5758 25 1 -1.3375 -12.3324 3.9991 26 6 0.4002 -8.5256 4.0027 27 6 0.9608 -7.1016 4.0040 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3633 0.8903 0.5134 30 1 -0.3633 -0.8898 0.5143 31 1 1.9895 2.1011 -0.0004 32 1 5.7911 -0.8249 -0.0010 33 1 4.9566 -2.1203 0.8899 34 1 4.9561 -2.1212 -0.8900 35 1 1.9423 -2.7616 2.0242 36 1 0.4544 -4.7532 0.6840 37 1 2.1670 -5.2380 0.6849 38 1 2.2297 -5.0148 3.1534 39 1 0.5170 -4.5300 3.1532 40 1 1.6132 -6.8586 0.7115 41 1 2.7123 -7.3376 2.0268 42 1 1.7379 -9.3316 0.9323 43 1 0.0993 -8.7312 1.2858 44 1 2.2405 -9.4366 3.3455 45 1 -0.2974 -10.8758 3.2023 46 1 1.2574 -14.9843 2.1689 47 1 0.4799 -8.9490 5.0039 48 1 -0.6460 -8.5045 3.6980 49 1 2.0032 -7.1219 4.3221 50 1 0.3831 -6.4847 4.6923 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699992590.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:28 Heat of formation + Delta-G solvation = -34.780883 kcal Electronic energy + Delta-G solvation = -28479.283153 eV Core-core repulsion = 24507.154302 eV Total energy + Delta-G solvation = -3972.128852 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.55602 -40.77113 -40.03720 -37.24945 -35.79664 -34.94590 -34.07225 -33.48404 -32.09634 -31.75764 -29.67053 -28.73250 -27.38465 -26.08208 -24.66611 -24.23513 -23.12473 -22.20543 -21.21408 -20.92038 -20.66784 -19.51885 -18.78445 -17.75963 -17.24258 -16.84698 -16.78112 -16.64425 -16.35563 -15.74215 -15.65213 -15.59287 -15.09339 -14.89381 -14.74885 -14.54129 -14.39440 -14.22009 -14.18067 -14.04553 -13.84072 -13.58624 -13.41982 -13.28286 -13.07719 -12.94739 -12.74204 -12.54683 -12.31601 -12.27404 -12.07607 -11.86654 -11.81211 -11.65742 -11.35239 -11.20047 -10.89054 -10.47634 -10.23509 -9.46106 -9.32247 -9.25281 -8.02119 -5.35094 0.59358 1.21393 1.36674 1.37784 1.41572 1.48708 1.83430 2.14029 2.48881 3.02145 3.28976 3.51749 3.55540 3.68129 3.77216 3.95022 3.98431 4.05040 4.16085 4.19483 4.28244 4.34682 4.36164 4.46550 4.52785 4.53572 4.61162 4.67445 4.73055 4.73853 4.74172 4.83630 4.90385 4.91828 4.96384 4.97362 5.01276 5.09609 5.15953 5.18511 5.29995 5.39810 5.45555 5.54254 5.76650 6.05987 6.07843 6.13627 6.22510 6.39625 7.08064 7.08533 7.85503 8.05010 9.19508 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.025643 B = 0.001854 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.655854 B =15095.061760 C =15373.315538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.170 4.170 3 C -0.029 4.029 4 O -0.178 6.178 5 C 0.044 3.956 6 C -0.084 4.084 7 C -0.260 4.260 8 C 0.596 3.404 9 O -0.579 6.579 10 N -0.702 5.702 11 C 0.118 3.882 12 C 0.055 3.945 13 N -0.541 5.541 14 C 0.060 3.940 15 C -0.125 4.125 16 C 0.174 3.826 17 N -0.752 5.752 18 C -0.227 4.227 19 H 0.053 0.947 20 C -0.068 4.068 21 N -0.986 5.986 22 Si 0.957 3.043 23 H -0.282 1.282 24 H -0.296 1.296 25 H -0.249 1.249 26 C -0.116 4.116 27 C 0.070 3.930 28 H 0.066 0.934 29 H 0.097 0.903 30 H 0.056 0.944 31 H 0.246 0.754 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.084 0.916 35 H 0.416 0.584 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.056 0.944 39 H 0.102 0.898 40 H 0.081 0.919 41 H 0.034 0.966 42 H 0.040 0.960 43 H 0.057 0.943 44 H 0.035 0.965 45 H 0.365 0.635 46 H 0.257 0.743 47 H 0.071 0.929 48 H 0.068 0.932 49 H 0.039 0.961 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.669 37.579 2.372 37.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.171 4.171 3 C -0.094 4.094 4 O -0.074 6.074 5 C -0.008 4.008 6 C -0.140 4.140 7 C -0.264 4.264 8 C 0.382 3.618 9 O -0.459 6.459 10 N -0.354 5.354 11 C -0.005 4.005 12 C -0.073 4.073 13 N -0.266 5.266 14 C -0.068 4.068 15 C -0.166 4.166 16 C 0.066 3.934 17 N -0.395 5.395 18 C -0.358 4.358 19 H 0.071 0.929 20 C -0.259 4.259 21 N -0.636 5.636 22 Si 0.785 3.215 23 H -0.208 1.208 24 H -0.223 1.223 25 H -0.174 1.174 26 C -0.155 4.155 27 C -0.058 4.058 28 H 0.085 0.915 29 H 0.116 0.884 30 H 0.076 0.924 31 H 0.262 0.738 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.102 0.898 35 H 0.253 0.747 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.120 0.880 40 H 0.099 0.901 41 H 0.052 0.948 42 H 0.059 0.941 43 H 0.076 0.924 44 H 0.053 0.947 45 H 0.198 0.802 46 H 0.066 0.934 47 H 0.090 0.910 48 H 0.086 0.914 49 H 0.057 0.943 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.491 37.182 1.463 37.214 hybrid contribution -0.126 -1.059 0.255 1.097 sum 0.365 36.122 1.717 36.165 Atomic orbital electron populations 1.20224 0.87647 1.03651 1.02572 1.21636 0.97718 0.90344 1.07430 1.24372 0.78597 1.00818 1.05636 1.83760 1.30526 1.21589 1.71519 1.22918 0.96374 0.81157 1.00372 1.20581 0.90833 0.98022 1.04575 1.21041 0.94543 0.93370 1.17454 1.17523 0.75655 0.85235 0.83352 1.90813 1.52631 1.68880 1.33558 1.45765 1.68956 1.12106 1.08592 1.21450 1.00501 0.80614 0.97974 1.22210 1.01351 0.89009 0.94706 1.61942 1.55277 1.01718 1.07702 1.22106 0.94548 0.93195 0.96949 1.22090 1.00847 0.94655 0.98967 1.20478 0.95897 0.83093 0.93952 1.42810 1.10356 1.03621 1.82675 1.19015 0.93972 0.86874 1.35978 0.92869 1.25529 1.02557 0.95246 1.02585 1.69891 1.37544 0.99487 1.56705 0.85371 0.80431 0.77159 0.78588 1.20792 1.22275 1.17375 1.21802 1.00114 0.94547 0.99027 1.22023 0.99920 0.94578 0.89282 0.91534 0.88395 0.92449 0.73817 0.87909 0.87989 0.89752 0.74654 0.91900 0.92021 0.92621 0.87991 0.90113 0.94764 0.94134 0.92447 0.94685 0.80177 0.93433 0.90996 0.91372 0.94264 0.88004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.99 10.38 71.24 0.74 -0.25 16 2 C -0.17 -2.56 6.38 -18.49 -0.12 -2.68 16 3 C -0.03 -0.32 11.96 66.89 0.80 0.48 16 4 O -0.18 -2.59 10.52 4.51 0.05 -2.54 16 5 C 0.04 0.70 7.37 25.26 0.19 0.89 16 6 C -0.08 -0.91 10.18 71.24 0.72 -0.18 16 7 C -0.26 -4.95 6.07 -18.99 -0.12 -5.07 16 8 C 0.60 13.65 7.41 86.65 0.64 14.29 16 9 O -0.58 -18.90 17.11 -4.08 -0.07 -18.97 16 10 N -0.70 -11.56 5.55 -466.41 -2.59 -14.15 16 11 C 0.12 2.25 4.92 86.38 0.43 2.67 16 12 C 0.05 0.85 5.39 86.30 0.46 1.31 16 13 N -0.54 -11.94 4.81 -896.37 -4.31 -16.25 16 14 C 0.06 1.62 4.85 86.33 0.42 2.04 16 15 C -0.13 -4.43 5.68 30.65 0.17 -4.25 16 16 C 0.17 6.57 2.84 45.07 0.13 6.70 16 17 N -0.75 -35.59 4.93 -322.55 -1.59 -37.18 16 18 C -0.23 -13.19 10.42 84.03 0.88 -12.31 16 19 H 0.05 3.40 8.06 -2.91 -0.02 3.37 16 20 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 21 N -0.99 -64.31 13.97 21.65 0.30 -64.01 16 22 Si 0.96 46.37 27.74 68.60 1.90 48.28 16 23 H -0.28 -13.44 7.11 99.48 0.71 -12.74 16 24 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 25 H -0.25 -10.81 6.52 99.48 0.65 -10.16 16 26 C -0.12 -3.32 5.57 30.65 0.17 -3.15 16 27 C 0.07 1.49 5.42 86.33 0.47 1.96 16 28 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.25 0.44 8.06 -2.91 -0.02 0.42 16 32 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.08 1.07 8.14 -2.39 -0.02 1.06 16 35 H 0.42 4.28 8.46 -92.70 -0.78 3.50 16 36 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 37 H 0.06 1.37 6.21 -2.39 -0.01 1.36 16 38 H 0.06 0.72 8.08 -2.39 -0.02 0.70 16 39 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 40 H 0.08 2.10 5.81 -2.39 -0.01 2.09 16 41 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 44 H 0.04 1.42 8.08 -2.39 -0.02 1.41 16 45 H 0.37 16.58 5.66 -92.71 -0.52 16.06 16 46 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 47 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 48 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 49 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 50 H 0.10 1.63 8.12 -2.38 -0.02 1.61 16 Total: -1.00 -80.06 404.53 -0.28 -80.33 By element: Atomic # 1 Polarization: 26.10 SS G_CDS: -0.42 Total: 25.68 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: 6.45 Total: -1.18 kcal Atomic # 7 Polarization: -123.40 SS G_CDS: -8.19 Total: -131.59 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -0.02 Total: -21.51 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 1.90 Total: 48.28 kcal Total: -80.06 -0.28 -80.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699992590.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.552 kcal (2) G-P(sol) polarization free energy of solvation -80.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds